genome.fa.s14.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  157  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47067402--47067430	15	1.9	15	100	0	58	27	34	3	34	1.74
47073796--47073845	25	2.0	25	92	0	82	26	26	22	26	2.00
47078058--47078109	24	2.2	24	89	0	77	53	7	3	34	1.48
47078779--47078816	20	1.9	20	88	0	58	42	5	5	47	1.48
47082795--47082848	3	18.0	3	100	0	108	66	0	0	33	0.92
47088993--47089026	6	5.7	6	100	0	68	70	14	0	14	1.17
47088985--47089033	12	4.0	12	86	2	53	73	12	2	12	1.18
47088985--47089033	18	2.7	18	83	3	71	73	12	2	12	1.18
47089025--47089061	20	2.0	20	89	10	60	75	8	16	0	1.02
47089464--47089502	21	1.9	21	89	5	62	69	0	15	15	1.20
47090698--47090965	87	3.1	87	87	1	378	27	22	25	24	2.00
47091325--47091730	141	2.9	140	90	1	616	32	17	21	27	1.96
47091586--47091679	44	2.1	44	88	0	134	28	22	24	24	1.99
47094731--47094901	85	2.0	85	100	0	342	57	9	11	21	1.63
47098987--47099058	27	2.6	27	86	2	99	13	38	12	34	1.83
47099247--47099541	44	6.6	44	71	10	132	30	21	17	29	1.96
47099191--47099546	182	2.0	182	90	0	559	30	20	18	30	1.97
47099682--47099791	44	2.5	45	79	4	125	31	21	19	27	1.97
47099714--47099880	45	3.7	45	77	7	160	27	20	22	29	1.98
47099968--47100277	122	2.5	122	88	1	451	26	24	15	33	1.95
47100182--47100349	72	2.3	72	91	0	264	25	26	15	32	1.95
47100289--47100389	51	2.0	51	92	0	166	29	23	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47100310--47100476	87	1.9	87	81	0	199	29	26	17	26	1.97
47100318--47100753	138	3.3	136	74	11	434	28	24	16	30	1.96
47100474--47100619	72	2.0	72	86	2	204	24	25	13	36	1.92
47100546--47100642	51	1.9	51	91	0	158	30	21	14	32	1.93
47100217--47100789	261	2.2	261	83	1	727	28	24	16	31	1.96
47100626--47100695	36	1.9	36	88	0	104	28	20	21	30	1.98
47100583--47100746	87	1.9	87	79	2	186	30	23	15	31	1.95
47100784--47101261	132	3.6	132	87	1	690	24	24	20	30	1.98
47101192--47101296	44	2.4	44	77	3	122	26	25	17	30	1.97
47105125--47105791	88	7.6	88	84	1	699	27	23	20	28	1.99
47114110--47114146	14	2.6	14	95	0	65	18	24	32	24	1.97
47121177--47121202	11	2.4	11	100	0	52	42	15	0	42	1.47
47121653--47121683	15	2.1	15	94	5	55	70	9	0	19	1.14
47126858--47126894	18	2.0	18	89	5	56	37	16	13	32	1.87
47127182--47127219	19	2.1	19	85	5	51	65	2	0	31	1.06
47130711--47130826	57	2.0	57	89	0	178	29	20	7	42	1.80
47135840--47135870	7	4.4	7	100	0	62	12	0	38	48	1.42
47135840--47135879	21	1.9	21	85	10	55	17	0	35	47	1.48
47137844--47137967	63	2.0	64	80	4	144	42	4	24	28	1.75
47143430--47143721	50	5.7	50	77	9	236	25	26	20	28	1.99
47143479--47143721	100	2.4	100	82	8	274	24	27	20	27	1.99
47154277--47154454	27	6.6	27	74	3	117	28	26	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47156055--47156134	22	3.6	22	79	12	101	18	21	17	42	1.89
47158733--47158864	65	2.0	65	97	0	246	33	27	9	29	1.89
47159700--47159807	50	2.2	50	88	6	173	24	23	6	46	1.75
47163426--47163723	81	3.8	78	76	11	254	24	23	10	41	1.86
47163426--47163688	27	9.7	27	76	7	223	24	22	10	42	1.85
47175774--47175814	20	2.1	18	86	13	55	19	9	12	58	1.61
47176460--47176544	44	1.9	44	95	0	152	41	14	7	37	1.73
47180601--47180634	16	2.2	15	89	5	50	55	0	0	44	0.99
47186201--47186274	37	2.0	37	100	0	148	54	18	13	13	1.71
47191537--47191581	9	5.0	9	86	0	63	24	28	2	44	1.66
47195610--47195711	41	2.5	41	86	0	132	27	25	18	28	1.98
47196283--47196328	21	2.2	21	84	7	58	41	13	4	41	1.63
47197368--47197392	13	1.9	13	100	0	50	68	24	0	8	1.16
47198148--47198278	61	2.2	57	86	5	172	51	4	3	40	1.41
47206199--47206272	32	2.3	32	85	0	94	32	13	27	27	1.94
47217412--47217452	17	2.4	18	80	12	50	29	0	0	70	0.87
47219933--47219976	23	1.9	23	85	0	61	40	0	2	56	1.11
47221001--47221045	23	2.0	23	83	8	58	66	2	26	4	1.22
47225622--47225728	32	3.3	32	92	0	169	30	17	17	33	1.94
47225936--47225979	22	2.0	22	95	0	79	54	20	4	20	1.62
47228641--47228730	43	2.1	43	81	4	101	27	18	15	37	1.92
47231525--47231573	18	2.8	17	82	17	57	44	20	0	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47235038--47235079	20	2.0	20	86	9	57	40	4	23	30	1.75
47240425--47240474	19	2.6	19	83	3	64	54	6	4	36	1.44
47241597--47241626	12	2.4	13	94	5	53	73	0	13	13	1.10
47241937--47241985	14	3.5	14	76	20	57	10	6	46	36	1.63
47241932--47241995	28	2.3	28	94	0	110	10	6	45	37	1.65
47249330--47249535	103	2.0	103	91	1	333	21	14	26	37	1.91
47253008--47253077	14	5.1	14	69	22	58	45	0	0	54	0.99
47253967--47254019	21	2.4	21	87	6	70	60	0	1	37	1.08
47254641--47254673	17	1.9	18	88	11	52	18	18	18	45	1.86
47255604--47255645	22	2.0	21	86	9	59	50	0	35	14	1.43
47271238--47271341	28	3.5	28	75	12	91	29	21	20	28	1.98
47271437--47271490	26	2.1	26	85	0	72	37	22	22	18	1.95
47271650--47271996	27	12.9	27	79	1	338	16	17	21	44	1.86
47271678--47271997	107	3.0	107	81	4	369	16	16	21	45	1.85
47277931--47277964	15	2.3	15	100	0	68	32	5	11	50	1.63
47278671--47278757	28	2.9	28	73	15	84	24	26	25	24	2.00
47278708--47278772	28	2.4	28	78	2	78	29	23	24	23	1.99
47279134--47279351	27	8.1	26	82	9	224	18	18	16	45	1.85
47279141--47279351	81	2.6	79	82	7	264	18	18	16	45	1.86
47283084--47283124	17	2.3	18	84	12	50	43	0	12	43	1.41
47283082--47283125	18	2.3	18	84	11	52	40	0	15	43	1.47
47287153--47287233	24	3.4	22	78	10	81	28	20	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47287168--47287272	48	2.2	48	91	3	167	30	26	19	23	1.98
47287168--47287272	24	4.4	24	80	4	131	30	26	19	23	1.98
47287360--47287470	42	2.6	42	90	2	161	36	17	12	33	1.87
47287356--47287491	42	3.2	42	85	4	159	38	16	13	30	1.88
47287849--47287886	19	2.0	19	100	0	76	42	21	26	10	1.85
47295453--47295810	75	4.7	75	84	5	413	29	16	18	35	1.93
47295453--47295810	149	2.4	151	84	6	442	29	16	18	35	1.93
47295705--47295843	75	1.9	75	80	3	163	29	18	17	33	1.95
47295453--47295854	150	2.7	149	80	6	330	29	16	17	36	1.92
47296697--47296750	23	2.3	24	78	9	58	66	0	29	3	1.09
47296682--47296738	19	2.8	21	74	15	66	66	0	29	3	1.08
47296843--47296884	11	3.2	13	78	21	52	76	0	23	0	0.79
47296834--47296913	11	7.3	11	69	18	51	72	2	23	1	1.04
47296836--47296903	33	2.1	33	83	5	84	72	2	25	0	0.99
47297498--47297550	17	3.1	17	83	5	70	30	13	11	45	1.78
47299374--47299552	27	6.6	26	80	6	171	26	16	28	29	1.97
47299376--47299531	82	1.9	81	86	3	224	26	16	28	28	1.97
47299372--47299552	82	2.2	81	81	2	220	26	16	28	29	1.96
47318665--47318690	3	8.7	3	100	0	52	34	0	0	65	0.93
47319022--47319056	3	11.7	3	100	0	70	34	0	0	65	0.93
47319234--47319311	31	2.6	30	86	8	88	37	6	11	44	1.66
47319244--47319312	31	2.3	30	87	5	102	34	4	13	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47319260--47319320	31	2.0	31	90	0	95	36	4	13	45	1.64
47319451--47319531	29	2.6	31	84	9	112	49	13	6	30	1.67
47323059--47323146	27	3.3	27	82	3	115	29	18	21	30	1.97
47329879--47330008	39	3.3	39	87	0	170	34	4	17	43	1.70
47335667--47335714	10	4.6	10	82	10	51	33	0	2	64	1.05
47340199--47340227	14	2.1	14	100	0	58	34	13	34	17	1.89
47343076--47343124	16	3.1	17	77	14	59	57	6	2	34	1.35
47353469--47353523	18	3.1	18	74	15	51	67	1	3	27	1.17
47353558--47353712	9	16.8	9	66	20	63	60	2	5	31	1.34
47358657--47358745	45	2.0	45	95	0	160	29	14	28	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213