genome.fa.s14.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  138  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41158365--41158437	30	2.4	30	79	9	85	34	2	1	61	1.19
41164249--41164300	23	2.3	23	82	0	68	40	25	15	19	1.90
41164408--41164466	27	2.4	23	78	13	57	30	22	3	44	1.69
41165414--41165449	16	2.2	16	90	0	54	0	36	0	63	0.94
41165457--41165516	25	2.5	23	82	17	61	10	23	3	63	1.40
41165684--41165723	20	1.9	20	90	10	62	55	0	0	45	0.99
41165673--41165743	30	2.4	28	83	6	88	57	1	0	40	1.07
41165671--41165752	28	2.9	28	72	17	78	56	2	0	41	1.13
41167310--41167417	33	3.3	33	77	5	137	25	21	18	35	1.96
41167309--41167452	66	2.2	66	90	5	229	25	22	18	34	1.96
41167328--41167450	33	3.7	32	75	10	113	26	21	17	33	1.96
41172880--41172973	46	2.0	46	85	2	125	74	5	11	8	1.21
41173356--41173388	7	5.0	7	92	7	52	69	0	15	15	1.19
41174615--41175207	87	6.8	87	91	0	954	30	22	22	24	1.99
41175023--41175159	43	3.2	43	65	17	120	27	26	23	22	1.99
41178184--41178386	42	5.1	42	64	21	123	56	8	7	27	1.56
41178165--41178512	75	4.5	76	88	5	504	55	9	8	27	1.59
41178165--41178512	151	2.2	154	90	4	540	55	9	8	27	1.59
41178702--41178849	33	4.5	33	77	5	111	28	14	43	14	1.84
41178723--41178857	33	4.1	33	76	14	116	26	14	43	15	1.85
41180968--41181119	77	2.0	77	89	5	236	52	13	0	33	1.41
41181105--41181284	67	2.7	67	96	1	328	55	21	1	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41181109--41181214	31	3.3	31	65	17	88	51	23	1	22	1.58
41181140--41181250	36	3.2	36	65	17	108	59	21	0	18	1.43
41181412--41181530	60	2.0	60	96	0	220	53	13	0	31	1.45
41182790--41182887	52	1.9	52	81	6	119	38	11	8	41	1.71
41182942--41182997	23	2.4	23	80	14	62	48	3	5	42	1.43
41183001--41183051	18	2.9	18	69	13	52	56	1	0	41	1.10
41185491--41185546	10	5.7	10	71	12	53	55	1	3	39	1.28
41187864--41187888	11	2.3	11	100	0	50	16	0	0	84	0.63
41189936--41189961	6	4.3	6	100	0	52	80	0	0	19	0.71
41193832--41193902	6	11.8	6	91	5	72	57	0	42	0	0.98
41193835--41193894	2	30.5	2	86	3	86	55	0	45	0	0.99
41201753--41201789	18	2.1	18	89	0	56	64	2	10	21	1.37
41202903--41202930	3	9.3	3	100	0	56	32	0	0	67	0.91
41212705--41212736	8	4.0	8	95	0	55	46	40	0	12	1.42
41218441--41218486	6	8.0	6	76	9	51	78	2	2	17	0.96
41218442--41218489	11	4.3	11	78	2	51	81	2	2	14	0.88
41218424--41218493	16	4.2	16	72	15	61	78	1	2	17	0.94
41219948--41219979	16	2.1	15	94	5	55	71	0	9	18	1.12
41219945--41219982	16	2.6	14	81	18	51	71	0	10	18	1.14
41230330--41230376	20	2.3	20	82	7	60	59	0	2	38	1.09
41240139--41240194	27	2.1	27	100	0	112	39	10	7	42	1.67
41243891--41244141	85	3.0	85	84	1	324	27	16	19	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41247503--41247540	12	3.2	12	81	11	51	57	0	13	28	1.36
41248690--41248789	4	25.0	4	93	0	173	26	1	25	48	1.58
41250351--41250413	25	2.6	24	73	9	65	31	19	22	26	1.97
41258019--41258072	25	2.1	26	86	10	76	31	3	1	62	1.23
41260254--41260299	13	3.4	14	79	8	51	78	0	19	2	0.86
41263116--41263163	10	4.6	10	77	10	51	60	2	0	37	1.09
41263993--41264065	11	6.9	11	71	16	57	39	2	0	57	1.13
41264022--41264065	12	3.8	12	81	6	54	38	2	0	59	1.10
41264022--41264070	23	2.2	22	88	3	71	36	2	0	61	1.08
41265622--41265675	16	3.3	16	82	5	72	40	1	0	57	1.09
41265622--41265673	17	3.1	17	80	8	70	42	1	0	55	1.10
41265708--41265745	20	1.9	20	100	0	76	28	5	18	47	1.70
41269249--41269303	21	2.6	21	77	5	58	50	3	1	43	1.30
41281024--41281054	9	3.3	9	95	4	53	58	0	0	41	0.98
41290346--41290463	41	2.9	41	87	0	164	34	24	18	22	1.96
41291801--41291826	13	2.0	13	100	0	52	46	23	0	30	1.53
41292780--41292877	32	3.3	32	64	21	95	62	4	19	14	1.47
41292769--41292888	56	2.1	57	96	3	226	64	3	20	11	1.41
41292869--41292903	15	2.2	16	90	5	54	82	0	14	2	0.77
41293337--41293362	12	2.2	12	100	0	52	30	0	19	50	1.48
41300916--41300994	37	2.1	37	88	4	115	25	30	18	25	1.98
41301113--41301555	47	9.4	47	94	0	724	28	30	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41301113--41301555	189	2.4	188	92	0	733	28	30	8	32	1.87
41305277--41305324	25	1.9	25	87	8	71	14	6	6	72	1.24
41305853--41305894	19	2.2	19	100	0	84	19	21	28	30	1.97
41312504--41312944	230	1.9	231	86	2	627	30	17	17	34	1.93
41314250--41314306	27	2.1	27	93	0	96	43	12	22	21	1.85
41319204--41319297	47	2.0	47	100	0	188	25	12	29	31	1.93
41324817--41324977	35	4.6	35	69	14	107	24	21	18	36	1.95
41327735--41327897	28	5.9	27	93	2	254	31	29	13	25	1.94
41327735--41327919	55	3.3	55	90	3	262	30	29	13	26	1.94
41327735--41327897	83	2.0	82	91	1	263	31	29	13	25	1.94
41338002--41338158	81	1.9	81	87	2	226	41	19	17	21	1.90
41337963--41338131	27	6.3	27	81	8	182	43	18	16	21	1.88
41338002--41338187	81	2.3	81	83	5	225	40	18	18	22	1.91
41338182--41338259	24	3.2	24	76	7	77	33	7	19	39	1.80
41338353--41338418	27	2.5	27	83	9	91	18	22	22	36	1.95
41338464--41338650	32	5.8	32	87	0	230	23	18	19	38	1.93
41338464--41338650	96	1.9	96	85	2	259	23	18	19	38	1.93
41343768--41343910	40	3.6	40	80	5	157	20	27	18	34	1.95
41343768--41343930	79	2.1	79	83	2	202	21	26	17	34	1.96
41344560--41344615	30	2.0	27	86	10	76	23	30	32	14	1.94
41346950--41347099	70	2.1	70	91	0	246	28	13	25	32	1.93
41347369--41347408	21	2.0	21	85	5	55	50	10	15	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41348823--41348878	25	2.2	25	87	6	78	28	23	19	28	1.98
41349220--41349301	40	2.0	40	85	0	110	34	15	18	31	1.92
41351565--41351676	40	2.8	40	80	1	127	30	16	30	22	1.96
41351890--41351990	27	3.8	26	81	6	114	42	17	14	24	1.88
41352007--41352127	27	4.5	26	83	6	127	34	19	25	20	1.96
41352007--41352127	54	2.2	54	84	5	147	34	19	25	20	1.96
41352145--41352266	24	5.1	24	85	0	154	27	7	21	44	1.78
41352342--41352406	27	2.5	26	80	9	78	20	21	23	35	1.96
41352455--41352607	32	4.8	32	75	12	143	20	20	20	38	1.94
41353788--41353886	51	1.9	51	83	0	126	25	20	21	33	1.97
41356858--41356987	49	2.6	49	85	6	174	23	26	21	28	1.99
41358633--41358858	40	5.7	40	85	4	278	24	20	27	26	1.99
41370457--41370598	30	4.9	29	81	1	115	38	23	16	21	1.93
41370457--41370557	29	3.5	29	82	2	96	35	23	19	20	1.96
41370504--41370598	30	3.2	30	84	1	120	38	22	14	24	1.91
41374057--41374092	18	1.9	19	88	5	56	13	13	8	63	1.50
41402214--41402251	13	3.2	12	85	10	51	5	13	0	81	0.85
41406605--41406794	49	3.8	50	78	2	168	23	26	21	28	1.99
41410369--41410423	26	2.1	26	82	0	65	30	21	1	45	1.62
41413080--41413194	57	2.0	58	86	1	160	29	18	6	45	1.75
41418114--41418165	27	1.9	27	88	0	77	25	25	7	42	1.81
41418123--41418207	27	3.2	26	71	6	71	28	23	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41418300--41418362	27	2.3	27	88	2	90	30	20	15	33	1.94
41419778--41419993	30	7.2	30	80	7	156	20	26	14	38	1.91
41419834--41419905	29	2.5	29	93	0	117	13	29	13	43	1.83
41421231--41421336	53	2.0	54	86	1	151	29	21	13	35	1.91
41424042--41424097	26	2.2	26	83	6	69	26	32	19	21	1.97
41429592--41429814	39	5.7	40	85	8	266	25	22	27	24	2.00
41429592--41429814	79	2.8	81	84	9	282	25	22	27	24	2.00
41429592--41429847	79	3.3	79	81	10	217	26	21	27	24	1.99
41431757--41431818	32	2.0	30	84	12	81	51	12	4	30	1.61
41431816--41431861	20	2.3	20	75	17	51	56	4	2	36	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213