genome.fa.s14.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  185  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55624877--55624910	18	2.0	17	88	11	52	58	0	0	41	0.98
55627673--55627723	26	2.0	26	96	0	93	47	23	11	17	1.81
55636638--55636683	24	2.0	24	87	8	69	43	2	0	54	1.12
55638958--55639120	77	2.1	77	84	4	206	25	8	12	53	1.67
55640600--55640784	46	4.0	46	90	1	291	29	25	8	36	1.86
55641991--55642023	17	1.9	17	100	0	66	57	18	0	24	1.40
55649115--55649169	19	3.0	19	73	5	51	60	16	0	23	1.36
55649489--55649526	17	2.2	17	90	9	60	65	0	0	34	0.93
55652580--55652615	3	11.7	3	94	5	63	66	2	0	30	1.06
55656861--55656928	35	1.9	35	87	0	100	44	4	11	39	1.61
55657292--55657333	20	2.1	20	86	0	57	47	0	7	45	1.30
55660425--55660453	10	3.0	10	95	5	51	72	0	6	20	1.07
55663681--55663741	32	1.9	32	83	12	81	49	1	4	44	1.33
55663700--55663741	20	2.1	20	86	0	57	47	0	7	45	1.30
55675574--55675611	16	2.4	16	83	16	53	15	5	0	78	0.91
55694324--55694362	6	6.3	6	88	5	60	15	20	0	64	1.30
55703998--55704037	11	3.5	11	83	12	53	60	0	2	37	1.11
55704022--55704080	25	2.4	25	100	0	118	64	0	0	35	0.94
55705476--55705541	33	2.0	33	100	0	132	36	21	21	21	1.95
55707642--55708126	143	3.4	143	90	0	745	26	21	20	31	1.98
55711610--55711642	9	3.8	9	88	4	50	45	9	21	24	1.80
55716660--55716690	16	1.9	16	93	0	53	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55717698--55717722	8	3.1	8	100	0	50	40	0	0	60	0.97
55717760--55717784	2	12.5	2	100	0	50	48	0	0	52	1.00
55721675--55722181	100	5.1	100	90	0	701	23	18	24	34	1.96
55721703--55722181	50	9.6	50	70	6	299	23	18	24	33	1.97
55721675--55722844	200	5.9	200	84	4	1417	24	19	23	32	1.97
55722094--55722266	85	2.0	85	85	2	231	24	17	26	30	1.97
55722186--55722844	50	13.2	50	69	4	396	25	19	22	31	1.98
55722179--55722844	100	6.7	100	89	3	955	25	19	22	31	1.98
55724131--55724188	6	9.8	6	87	5	57	12	13	5	68	1.35
55727628--55727657	15	1.9	16	93	6	53	33	6	20	40	1.78
55727889--55728057	41	4.1	41	90	0	266	30	20	27	22	1.98
55727889--55728051	82	2.0	82	97	0	308	30	19	27	22	1.98
55728242--55728359	37	3.5	37	82	13	130	27	10	27	33	1.89
55731942--55732011	3	23.3	3	100	0	140	65	0	0	34	0.93
55733623--55733711	25	3.1	30	82	15	125	40	6	26	25	1.80
55738260--55738310	25	2.0	25	96	0	93	50	7	17	23	1.72
55738257--55738345	30	3.1	30	84	12	116	42	6	24	25	1.79
55743234--55743285	24	2.2	24	82	6	61	53	7	5	32	1.53
55767103--55767303	102	2.0	102	90	0	321	19	20	27	32	1.97
55775845--55775886	22	1.9	22	85	0	57	28	35	7	28	1.84
55775853--55775896	22	2.0	22	86	0	61	27	29	6	36	1.83
55785426--55785464	20	2.0	20	94	0	69	20	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55792983--55793060	29	2.7	28	84	11	104	25	15	30	28	1.96
55793038--55793307	144	1.9	145	92	2	463	30	15	22	31	1.95
55799524--55799548	11	2.3	11	100	0	50	16	20	16	48	1.82
55818111--55818140	12	2.4	13	94	5	53	10	6	0	83	0.81
55830790--55830873	42	2.0	42	95	0	150	23	22	8	45	1.79
55830803--55830892	23	4.1	23	71	11	98	21	26	6	45	1.76
55835041--55835083	20	2.2	18	84	12	50	74	0	11	13	1.07
55835034--55835085	21	2.5	20	79	11	61	71	0	13	15	1.15
55835034--55835095	21	2.9	22	77	15	60	67	0	12	19	1.22
55835056--55835104	21	2.3	22	79	13	57	69	0	10	20	1.17
55835273--55835356	42	2.0	42	95	0	150	23	22	8	45	1.79
55835286--55835375	23	4.1	23	70	11	89	21	25	6	46	1.75
55836579--55836730	42	3.6	42	87	2	198	20	21	21	36	1.95
55836707--55836756	26	1.9	26	95	0	91	28	18	26	28	1.98
55837128--55837198	21	3.4	21	73	11	65	2	43	18	35	1.65
55842743--55842876	25	5.4	23	72	15	83	34	3	21	40	1.71
55842833--55843687	9	95.2	9	80	7	873	34	1	14	49	1.53
55846612--55846849	115	2.1	114	89	2	361	34	20	17	28	1.95
55846220--55846774	261	2.1	261	90	2	882	35	21	16	26	1.95
55847317--55847391	7	10.9	7	78	8	64	45	30	2	21	1.66
55847310--55847391	21	4.0	20	75	10	76	46	29	2	21	1.64
55847317--55847391	14	5.5	13	80	13	71	45	30	2	21	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55847523--55847570	20	2.4	21	86	6	64	52	33	0	14	1.42
55847721--55847762	22	1.9	22	90	0	66	33	45	2	19	1.63
55848348--55848487	72	1.9	72	85	4	192	27	25	24	22	2.00
55848378--55848527	72	2.1	72	83	2	185	30	24	22	22	1.99
55861403--55861456	24	2.4	21	72	21	56	31	3	5	59	1.38
55866430--55866465	18	2.0	18	100	0	72	33	38	22	5	1.77
55866770--55866843	8	9.4	8	76	16	66	45	1	1	51	1.18
55866767--55866843	16	4.9	15	76	14	84	45	1	1	51	1.17
55870108--55870168	30	2.0	31	93	3	106	24	22	26	26	2.00
55870381--55870723	27	12.7	27	82	8	342	17	18	20	42	1.89
55870382--55870711	81	4.1	82	88	3	411	17	18	20	43	1.88
55878149--55878227	38	2.1	38	100	0	158	30	12	15	41	1.84
55888686--55888718	15	2.2	15	89	10	50	27	0	3	69	1.03
55889745--55889827	38	2.2	37	77	12	89	44	4	21	28	1.73
55889930--55890039	23	5.0	23	83	9	142	20	20	23	36	1.95
55890407--55890439	3	11.0	3	100	0	66	33	0	0	66	0.92
55902086--55902112	12	2.2	12	100	0	54	44	18	22	14	1.86
55902531--55902573	14	2.9	14	80	13	50	53	0	4	41	1.21
55916572--55916661	23	4.1	23	71	11	98	21	26	6	45	1.76
55921100--55921183	42	2.0	42	95	0	150	23	22	8	45	1.79
55921113--55921202	23	4.1	23	70	11	89	21	25	6	46	1.75
55922428--55922665	42	5.6	42	86	4	300	21	21	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55922428--55922674	85	2.9	85	87	3	336	21	21	20	36	1.95
55922993--55923063	21	3.4	21	80	0	79	2	45	18	33	1.64
55928944--55928984	21	2.0	21	85	9	57	34	19	24	21	1.97
55936637--55936708	34	2.1	34	97	0	135	33	25	1	40	1.64
55946460--55946538	37	2.1	37	88	4	115	24	32	18	24	1.97
55946657--55947085	47	9.1	47	92	0	606	27	30	10	31	1.90
55950552--55950826	40	6.9	40	91	0	399	25	28	22	23	1.99
55951132--55951210	29	2.7	29	86	5	106	27	32	15	24	1.95
55953105--55953183	37	2.1	37	88	4	115	25	32	18	22	1.97
55953302--55953777	47	10.1	47	93	0	682	27	30	10	31	1.90
55959143--55959175	17	2.0	16	94	5	57	30	12	21	36	1.90
55964318--55964353	18	2.0	18	94	0	63	30	44	19	5	1.73
55964655--55964720	7	8.6	7	76	18	53	43	1	1	53	1.19
55964658--55964723	8	8.4	8	73	18	50	45	1	1	51	1.19
55964655--55964723	27	2.5	26	76	23	79	44	1	1	52	1.19
55964665--55964733	32	2.2	32	79	7	79	47	1	2	47	1.25
55965624--55965726	37	2.7	38	74	8	93	32	17	19	31	1.95
55968108--55968187	26	3.1	26	81	0	88	42	25	17	15	1.88
55968142--55968218	26	3.0	27	81	7	79	44	24	15	15	1.85
55968361--55968707	27	12.9	26	83	6	397	16	19	21	43	1.88
55968361--55968707	54	6.4	54	85	2	446	16	19	21	43	1.88
55968361--55968718	81	4.4	81	87	4	499	16	18	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55975014--55975205	94	2.1	94	94	1	341	36	18	15	29	1.92
55976006--55976082	26	3.0	26	84	0	100	40	24	20	14	1.90
55976257--55976685	54	7.9	54	79	5	438	17	18	19	43	1.88
55976255--55976685	81	5.3	81	82	4	476	18	19	19	43	1.88
55976258--55976696	27	16.3	27	81	7	392	18	18	18	44	1.87
55982537--55982614	39	2.0	39	94	0	138	23	10	29	37	1.88
55984246--55984875	47	13.2	47	89	3	936	31	7	30	30	1.86
55984246--55984875	96	6.6	96	92	2	1002	31	7	30	30	1.86
55984241--55984875	191	3.3	191	94	1	1035	31	7	30	30	1.85
55984996--55985067	37	1.9	37	88	0	108	19	19	33	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213