genome.fa.s14.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  146  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43783317--43783355	20	2.0	19	95	5	69	53	15	0	30	1.42
43785039--43785088	21	2.4	21	80	6	57	40	14	42	4	1.64
43785392--43785483	43	2.1	43	87	0	130	30	15	27	27	1.96
43789467--43789515	17	2.9	17	84	0	71	30	22	22	24	1.99
43790060--43790097	20	2.0	20	84	5	51	39	5	7	47	1.55
43793169--43793365	89	2.2	90	81	5	238	44	29	2	24	1.65
43793883--43794069	41	4.6	41	85	0	230	32	25	17	24	1.97
43801566--43801644	28	2.8	28	86	1	104	26	18	12	41	1.87
43802114--43802186	21	3.5	21	72	10	69	45	24	13	16	1.84
43802098--43802202	41	2.6	41	85	0	147	41	25	18	14	1.88
43802135--43802211	20	3.8	20	76	10	75	41	23	20	14	1.89
43802493--43804211	570	3.0	571	97	1	3242	38	23	9	28	1.86
43804923--43805082	43	3.7	43	89	2	225	30	26	16	26	1.96
43804889--43805082	86	2.3	85	83	3	255	29	26	15	28	1.96
43812130--43812183	27	2.0	27	85	7	74	38	3	0	57	1.17
43815708--43815909	27	7.5	27	85	2	253	43	18	17	21	1.89
43815708--43815918	54	3.9	54	86	3	291	42	19	16	21	1.89
43818310--43818370	25	2.4	25	83	5	79	37	3	0	59	1.14
43832338--43832435	25	4.0	24	76	11	99	30	20	24	24	1.98
43835184--43835215	12	2.6	13	85	14	50	56	6	0	37	1.25
43845409--43845470	31	2.0	31	90	6	99	40	16	6	37	1.74
43849882--43849931	25	2.0	25	100	0	100	36	20	16	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43854249--43854283	18	1.9	18	88	11	54	22	2	28	45	1.67
43854591--43854746	27	5.8	27	75	3	125	35	12	21	30	1.90
43854591--43854734	54	2.7	54	78	0	153	38	11	18	30	1.87
43855875--43855959	43	2.0	43	86	4	118	50	1	22	25	1.56
43856848--43856886	17	2.3	17	90	0	69	33	17	5	43	1.72
43857930--43858031	36	2.8	36	86	0	141	28	15	14	41	1.87
43892833--43892887	27	2.0	27	82	6	67	49	3	5	41	1.43
43892870--43892913	22	2.0	22	86	0	61	38	2	2	56	1.24
43893165--43893210	23	2.0	23	83	8	58	36	34	13	15	1.86
43894378--43894433	28	2.0	28	100	0	112	28	10	7	53	1.62
43905609--43905712	41	2.5	42	81	4	122	45	23	18	13	1.84
43914723--43914941	46	4.9	44	76	11	151	24	19	30	25	1.98
43924310--43924355	24	1.9	24	90	0	74	21	17	13	47	1.81
43937098--43937145	24	2.0	24	100	0	96	25	29	12	33	1.92
43937642--43937722	31	2.4	31	82	12	90	23	4	4	66	1.31
43938998--43939137	50	2.8	50	84	2	174	27	22	27	22	1.99
43948188--43948289	44	2.3	46	77	13	113	44	6	21	27	1.78
43948280--43948314	12	2.9	12	100	0	70	51	0	25	22	1.48
43949492--43949547	27	2.0	29	89	6	89	19	17	30	32	1.95
43949501--43949564	27	2.3	27	86	2	83	14	17	37	31	1.89
43950580--43950606	14	1.9	14	100	0	54	51	0	7	40	1.30
43952101--43952271	45	3.8	45	88	1	236	35	18	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43952105--43952293	90	2.1	90	83	2	227	37	18	19	24	1.94
43952285--43952405	45	2.6	46	81	7	138	42	15	23	18	1.88
43952652--43952749	50	2.0	50	91	0	160	44	6	21	27	1.75
43953447--43953537	43	2.1	43	89	2	139	42	10	12	34	1.77
43959929--43959990	7	8.7	7	81	10	54	38	33	0	27	1.57
43959920--43959990	22	3.2	22	72	9	65	38	33	1	26	1.65
43961745--43962039	41	7.2	41	77	8	244	31	26	18	22	1.97
43961771--43962039	82	3.3	81	80	6	274	31	27	18	22	1.97
43961745--43962032	123	2.3	123	83	4	341	32	26	18	22	1.97
43981832--43981865	16	2.1	16	89	10	52	2	17	0	79	0.86
43982644--43982699	22	2.5	23	82	2	69	51	1	1	44	1.22
43982675--43982714	16	2.5	16	91	0	62	47	2	7	42	1.45
43982725--43982864	59	2.4	59	98	0	271	39	4	9	47	1.55
43982846--43982873	9	3.1	9	100	0	56	32	0	10	57	1.33
43982968--43983015	23	2.0	24	88	4	71	56	2	0	41	1.11
43989019--43989088	35	2.0	35	100	0	140	31	8	20	40	1.82
43996617--43996654	16	2.4	16	86	8	51	39	18	13	28	1.88
43996733--43996780	13	3.6	13	78	13	53	64	2	2	31	1.16
43996943--43996983	20	2.0	20	100	0	82	29	9	14	46	1.77
44002327--44002364	19	2.0	20	94	5	69	23	10	10	55	1.65
44036728--44036758	15	2.0	16	93	6	55	67	12	0	19	1.22
44038711--44038746	18	2.1	16	90	10	54	30	5	2	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44042524--44042637	57	2.0	57	87	3	167	25	26	18	29	1.98
44048160--44048352	50	3.8	50	85	0	251	25	22	29	22	1.99
44060784--44060838	23	2.4	23	87	0	74	18	12	30	38	1.88
44075018--44075067	19	2.7	19	93	3	84	22	24	22	32	1.98
44093266--44093303	20	1.9	20	89	10	60	23	10	13	52	1.71
44106117--44106156	6	6.7	6	88	0	62	15	0	5	80	0.88
44108823--44108852	14	2.1	14	100	0	60	43	0	13	43	1.43
44109579--44109820	133	1.8	134	86	2	353	30	15	21	32	1.94
44112481--44112509	15	1.9	15	100	0	58	55	6	0	37	1.27
44114274--44114298	12	2.1	12	100	0	50	48	8	16	28	1.74
44118444--44118555	56	2.0	56	91	0	179	40	28	5	25	1.78
44121702--44121742	19	2.1	19	86	9	55	41	0	4	53	1.22
44122405--44122452	23	2.0	23	84	8	60	31	2	2	64	1.16
44123370--44123432	30	2.1	30	93	0	108	26	1	12	58	1.43
44123546--44123579	12	2.8	12	90	0	50	67	0	0	32	0.91
44130179--44130239	31	1.9	32	83	9	81	27	1	6	63	1.28
44134384--44134448	28	2.3	29	78	2	78	21	0	6	72	1.06
44144611--44144750	29	4.9	29	77	7	110	23	15	23	37	1.92
44146802--44146833	17	2.0	17	88	11	50	50	0	12	37	1.41
44148834--44148912	39	2.0	39	87	4	115	30	6	11	51	1.62
44149517--44149567	14	3.7	13	76	21	50	25	0	0	74	0.82
44149492--44149564	36	2.0	37	81	7	87	27	2	1	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44152493--44152524	15	2.0	17	88	11	50	28	31	25	15	1.96
44155206--44155255	19	2.5	20	83	6	57	8	4	10	78	1.09
44155497--44155527	10	3.1	10	90	0	53	25	9	12	51	1.70
44155807--44155910	32	3.4	31	70	20	83	28	24	18	28	1.98
44155802--44155975	61	2.9	61	84	0	224	28	23	17	31	1.97
44157894--44157932	18	2.2	18	90	0	60	58	7	2	30	1.39
44160325--44160349	10	2.5	10	100	0	50	60	0	8	32	1.26
44165223--44165253	14	2.2	14	100	0	62	19	19	0	61	1.35
44167105--44167279	46	3.8	46	76	13	196	29	29	20	21	1.98
44167112--44167283	93	1.8	93	93	0	299	28	29	20	21	1.98
44177382--44177488	20	5.4	19	72	6	88	40	24	18	16	1.91
44177373--44177514	40	3.6	39	80	3	142	38	22	19	20	1.94
44177413--44177567	80	1.9	79	83	7	197	36	22	21	18	1.95
44178319--44178414	21	4.8	19	83	9	129	39	10	15	34	1.82
44178320--44178403	40	2.0	41	90	4	134	40	10	14	34	1.80
44178319--44178421	40	2.7	38	81	14	129	39	9	16	33	1.81
44178393--44178437	23	2.0	23	91	4	74	37	4	17	40	1.70
44178403--44178447	23	2.0	23	86	4	65	33	4	15	46	1.66
44179047--44179090	23	1.9	23	90	0	70	29	9	4	56	1.50
44179729--44179925	98	2.0	98	95	0	358	28	10	24	37	1.88
44185543--44185891	44	7.9	44	65	7	152	29	20	25	24	1.99
44185517--44185920	132	3.1	132	94	0	682	30	19	25	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44186015--44186142	45	2.9	45	84	12	174	27	18	28	25	1.98
44185936--44186132	84	2.3	87	81	11	210	27	20	25	26	1.99
44186015--44186132	44	2.7	44	84	13	170	26	20	27	25	1.99
44186347--44186422	21	3.7	21	89	3	120	39	11	14	34	1.83
44186377--44186445	21	3.0	24	85	10	92	39	7	15	37	1.76
44187018--44187064	23	2.0	24	91	8	78	29	6	4	59	1.41
44187698--44187894	98	2.0	98	92	0	331	28	10	23	37	1.87
44196312--44196353	21	2.0	21	85	0	57	33	2	2	61	1.21
44199880--44200963	88	12.3	88	84	1	1341	24	25	23	26	2.00
44200079--44200214	43	3.1	43	66	12	114	22	27	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213