genome.fa.s14.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  129  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37657399--37657428	11	2.7	11	100	0	60	10	0	6	83	0.81
37657384--37657436	11	4.5	11	83	7	52	13	3	5	77	1.09
37659375--37659425	24	2.1	24	92	0	84	33	1	43	21	1.64
37663323--37663361	19	2.1	19	100	0	78	41	15	15	28	1.87
37670987--37671189	101	2.0	101	100	0	406	29	19	13	36	1.91
37676505--37676541	18	2.1	18	100	0	74	37	40	0	21	1.54
37677720--37677753	13	2.6	13	95	0	59	82	0	17	0	0.67
37677721--37677753	9	3.8	9	84	8	50	81	0	18	0	0.68
37678851--37678938	42	2.0	44	82	4	108	45	4	21	28	1.71
37681653--37681696	20	2.2	20	83	0	52	25	18	18	38	1.92
37683599--37683649	25	2.2	24	86	10	70	62	0	1	35	1.06
37688464--37688495	12	2.7	12	95	0	55	25	3	25	46	1.67
37690630--37690680	26	2.0	24	88	7	75	49	21	9	19	1.77
37692592--37692650	30	2.0	30	86	0	82	38	5	23	32	1.77
37693373--37693422	12	4.2	12	79	2	57	50	6	26	18	1.69
37699981--37700088	50	2.2	51	80	6	114	32	25	13	28	1.94
37703441--37703475	13	2.8	12	83	8	52	31	11	0	57	1.34
37703573--37703620	23	2.2	23	85	7	64	33	2	2	62	1.18
37703572--37703738	21	8.2	21	66	17	77	40	0	3	55	1.22
37703593--37703748	58	2.6	60	86	6	203	42	0	3	53	1.21
37703919--37703956	16	2.4	16	90	0	58	26	18	5	50	1.68
37714050--37714104	28	2.0	28	82	7	67	21	3	9	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37720556--37720612	30	1.9	29	85	3	78	45	7	19	28	1.76
37720960--37721138	50	3.6	49	78	3	164	25	22	27	23	2.00
37725759--37725835	40	1.9	40	100	0	154	42	10	9	37	1.71
37725894--37725985	35	2.7	31	77	19	96	45	11	3	39	1.57
37729061--37729100	14	2.9	14	84	0	53	42	17	7	32	1.77
37729026--37729092	34	1.9	35	84	3	91	43	13	10	32	1.78
37736737--37736866	49	2.6	49	85	1	170	28	21	29	20	1.98
37737130--37737179	20	2.5	20	81	12	66	58	6	24	12	1.56
37756409--37756618	40	5.3	40	90	1	262	25	20	27	26	1.99
37756357--37756653	80	3.7	80	80	6	212	26	20	27	25	1.99
37763972--37764181	40	5.3	40	91	1	271	25	20	27	26	1.99
37763919--37764181	120	2.2	120	81	4	300	25	20	27	26	1.99
37770058--37770084	13	2.1	13	100	0	54	0	22	44	33	1.53
37770060--37770093	13	2.6	13	90	0	50	2	20	44	32	1.67
37772815--37772847	17	1.9	17	100	0	66	48	12	18	21	1.80
37790227--37790297	36	2.0	35	83	2	88	46	0	1	52	1.09
37790235--37790315	26	3.1	26	79	8	85	44	0	2	53	1.14
37790228--37790379	27	5.8	26	71	16	100	42	1	2	53	1.23
37791743--37791785	20	2.2	20	86	0	59	48	0	6	44	1.29
37798911--37799092	28	6.5	28	92	1	285	33	26	12	27	1.92
37804874--37804952	37	2.1	37	90	0	122	25	31	18	24	1.98
37805071--37805389	47	6.7	47	92	2	478	28	30	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37805121--37805199	25	3.3	25	66	16	76	31	29	5	34	1.79
37809231--37809450	40	5.5	40	77	5	198	25	28	22	24	1.99
37809760--37809838	29	2.7	29	86	5	106	27	32	15	24	1.95
37809820--37810008	43	4.4	43	98	0	369	26	34	14	23	1.94
37811867--37811943	35	2.1	37	90	4	122	24	31	19	24	1.98
37812110--37812188	25	3.3	25	66	16	76	31	29	5	34	1.79
37812060--37812331	47	5.7	47	90	2	375	28	30	8	32	1.86
37815030--37815106	39	2.0	39	92	0	127	24	29	20	24	1.99
37820519--37820547	15	2.0	15	93	6	51	75	6	0	17	1.01
37820883--37820942	27	2.3	26	85	2	75	35	20	23	21	1.96
37821596--37821743	26	5.7	27	80	7	155	23	18	20	37	1.94
37821578--37821744	53	3.2	53	84	5	209	23	19	19	36	1.95
37834827--37834932	17	6.2	17	72	8	90	31	11	5	51	1.61
37838938--37838968	15	2.1	15	100	0	62	38	0	19	41	1.51
37843906--37843947	16	2.7	16	79	17	52	47	19	9	23	1.78
37843993--37844452	27	17.1	26	78	5	409	19	15	22	42	1.88
37843994--37844405	81	5.1	80	82	5	463	19	16	21	42	1.89
37843993--37844450	81	5.7	81	81	7	450	19	15	22	42	1.88
37847336--37847926	27	22.0	27	81	1	641	18	18	21	41	1.90
37847336--37847917	80	7.2	79	83	4	639	18	18	21	41	1.90
37847336--37847926	107	5.5	105	81	5	603	18	18	21	41	1.90
37847325--37847926	134	4.5	133	80	5	656	18	18	22	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37853492--37853516	7	3.6	7	100	0	50	32	28	12	28	1.92
37856231--37856408	27	6.6	27	84	3	205	29	28	15	26	1.96
37856252--37856407	82	1.9	81	88	3	233	29	28	15	26	1.96
37866373--37866556	95	1.9	95	91	0	296	24	36	20	18	1.94
37899424--37899470	24	1.9	24	83	12	60	38	0	38	23	1.55
37900145--37900774	27	23.5	27	82	3	675	43	20	15	20	1.88
37900996--37901069	26	2.8	25	74	11	69	24	21	18	35	1.96
37901158--37901353	28	7.0	28	83	5	254	23	22	22	30	1.99
37907053--37907127	19	3.8	19	87	6	105	36	17	12	34	1.87
37907499--37908048	44	12.5	44	78	7	481	30	23	16	30	1.96
37907543--37907971	89	4.9	89	86	2	596	30	23	15	30	1.96
37907543--37908048	177	2.9	177	86	2	653	30	23	16	30	1.96
37907981--37909376	88	15.9	88	89	1	1976	24	26	22	25	2.00
37907629--37908574	44	21.5	45	69	9	151	27	25	20	27	1.99
37917265--37917319	21	2.7	21	86	5	78	34	16	12	36	1.87
37923215--37923408	75	2.6	76	78	4	205	24	24	20	29	1.99
37924435--37924501	30	2.2	30	91	0	116	17	31	31	19	1.95
37926952--37927008	24	2.4	24	82	11	73	7	21	3	68	1.29
37927858--37927894	11	3.4	11	88	0	56	29	40	8	21	1.82
37930277--37930499	40	5.6	39	85	3	241	26	27	20	24	1.99
37930277--37930499	120	1.9	119	81	6	272	26	27	20	24	1.99
37956803--37956869	28	2.4	28	87	2	100	29	22	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37957185--37957760	27	21.3	27	80	9	301	20	17	20	41	1.90
37957185--37957760	54	10.7	53	85	3	668	20	17	20	41	1.90
37957185--37957760	81	7.1	81	85	4	705	20	17	20	41	1.90
37969247--37969537	50	5.9	50	80	3	266	29	20	27	21	1.98
37969247--37969432	100	1.9	100	89	2	293	27	21	30	20	1.98
37969356--37969537	49	3.7	47	76	6	157	30	21	25	22	1.99
37975515--37975596	42	1.9	42	90	7	130	37	12	9	40	1.76
37975588--37975638	20	2.5	20	83	0	57	47	17	7	27	1.75
37981310--37981653	117	3.0	117	84	2	417	30	23	20	26	1.98
37981320--37981664	114	3.0	114	84	2	422	29	22	20	27	1.99
37982009--37982037	3	9.7	3	100	0	58	0	65	0	34	0.93
37984080--37984118	20	2.0	19	85	14	53	41	17	0	41	1.50
37985933--37986175	50	4.8	50	92	0	387	25	21	30	21	1.98
37989637--37989863	42	5.5	42	87	4	293	29	19	24	26	1.99
37991138--37991167	12	2.5	12	94	0	51	10	43	20	26	1.83
37994353--37994394	21	2.0	21	95	0	75	21	11	4	61	1.48
37998429--37998480	21	2.5	21	79	14	54	69	1	21	7	1.24
37998514--37998580	33	1.9	33	82	8	80	47	8	31	11	1.71
38007571--38007825	41	6.3	40	80	5	246	36	16	25	21	1.93
38007571--38007825	82	3.1	81	83	3	325	36	16	25	21	1.93
38007619--38007685	20	3.3	20	66	4	53	34	17	31	16	1.93
38010470--38010523	27	2.0	28	89	7	85	20	14	24	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38013212--38013567	78	4.6	78	94	0	615	38	4	14	43	1.64
38013739--38013930	78	2.5	76	80	6	208	38	3	17	40	1.67
38014267--38014506	41	5.8	41	87	4	306	29	20	26	23	1.99
38014675--38014751	34	2.3	34	79	4	84	35	9	18	37	1.82
38014738--38014819	40	2.0	40	95	0	146	37	6	13	42	1.69
38014738--38014829	40	2.4	38	89	5	132	39	5	11	43	1.65
38016752--38016830	25	3.2	25	94	0	131	18	48	11	21	1.80
38023497--38023539	17	2.5	18	81	11	54	51	0	0	48	1.00
38023513--38023743	67	3.5	66	75	16	246	42	5	3	48	1.43
38023503--38023833	130	2.6	127	89	5	490	43	4	3	47	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213