genome.fa.s14.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  195  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58515433--58515466	12	2.9	12	86	4	52	23	26	0	50	1.50
58520783--58520817	6	5.5	6	87	12	52	14	17	0	68	1.21
58527590--58527618	5	5.8	5	100	0	58	62	0	0	37	0.96
58532346--58532391	18	2.3	20	75	10	51	4	32	0	63	1.14
58537274--58537351	26	3.0	26	76	10	70	48	3	7	39	1.50
58537378--58537496	58	2.0	59	80	4	134	47	4	11	36	1.60
58539289--58539407	44	2.7	44	81	5	116	29	23	20	26	1.99
58539504--58540260	45	16.9	45	76	8	630	30	24	16	28	1.96
58539652--58540260	179	3.4	180	76	7	583	30	24	16	28	1.97
58539676--58540180	134	3.8	134	82	4	601	29	25	16	29	1.96
58539509--58540278	224	3.4	223	79	9	814	30	24	16	29	1.96
58541220--58541263	13	3.3	13	82	14	54	6	6	2	84	0.86
58541227--58541263	19	2.0	20	89	10	60	8	5	2	83	0.88
58541700--58541745	7	5.9	8	87	10	60	8	2	2	86	0.72
58548123--58548200	26	3.0	26	76	10	70	48	3	7	39	1.50
58548227--58548345	58	2.0	59	82	4	143	47	4	11	36	1.59
58550640--58550913	94	2.9	93	82	9	301	49	7	12	31	1.67
58563993--58564027	17	2.1	17	94	0	61	17	2	34	45	1.63
58569258--58569621	181	2.0	181	94	1	631	26	20	25	28	1.99
58576719--58576743	13	1.9	13	100	0	50	96	0	4	0	0.24
58597761--58597792	16	2.0	16	93	0	55	56	15	0	28	1.40
58598802--58598859	19	2.7	22	84	10	68	36	8	17	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58599043--58599087	23	2.0	23	81	0	54	22	0	15	62	1.33
58605323--58605365	21	2.0	21	90	0	68	37	18	4	39	1.72
58605536--58605597	31	2.0	30	81	12	72	29	14	16	40	1.88
58607351--58607394	23	1.9	23	85	0	61	50	22	9	18	1.75
58609733--58609965	121	1.9	121	89	0	358	28	21	21	28	1.99
58612682--58612913	121	1.9	121	88	0	347	27	19	21	31	1.98
58636163--58636205	22	2.0	22	86	9	61	27	9	2	60	1.40
58639019--58639067	5	10.0	5	95	4	91	40	0	18	40	1.50
58649796--58649874	25	3.3	23	75	13	70	32	21	27	17	1.96
58649806--58649872	25	2.8	24	78	13	75	32	20	28	17	1.96
58649893--58649965	38	1.9	38	88	0	110	26	15	27	31	1.95
58650430--58650524	50	1.9	50	85	8	131	31	17	21	29	1.96
58650585--58650933	50	7.0	50	73	1	313	33	22	20	23	1.97
58650537--58650933	100	4.0	100	88	0	578	32	21	20	24	1.98
58650962--58651384	44	9.5	44	76	8	288	30	20	21	27	1.98
58651241--58651449	44	4.8	44	84	5	185	29	21	25	23	1.99
58652902--58652942	22	1.9	21	85	5	55	31	4	2	60	1.30
58653399--58653539	72	2.0	72	92	0	237	29	17	18	34	1.94
58654973--58654997	13	1.9	13	100	0	50	16	16	0	68	1.22
58666304--58666388	37	2.3	37	87	0	116	38	25	5	29	1.79
58666607--58666851	41	6.0	41	94	0	418	23	27	19	29	1.98
58667077--58667117	17	2.5	17	88	7	59	43	14	2	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58667070--58667117	17	2.6	18	77	12	53	43	16	2	37	1.60
58670094--58670168	36	2.1	35	80	14	82	57	1	4	37	1.26
58670645--58670681	9	4.1	9	92	0	65	29	10	13	45	1.77
58675389--58675438	26	2.0	26	88	4	75	42	10	18	30	1.82
58677606--58677931	46	7.6	46	81	14	383	28	21	14	35	1.93
58677741--58677888	36	3.8	36	77	16	161	29	20	12	37	1.90
58677695--58677931	82	2.9	82	94	0	402	29	21	13	36	1.91
58677606--58677931	128	2.5	132	80	14	387	28	21	14	35	1.93
58683767--58683811	21	2.1	21	100	0	90	26	22	13	37	1.91
58699527--58699568	22	1.9	22	85	0	57	54	9	4	30	1.53
58699695--58699834	19	7.3	19	67	16	58	60	2	5	31	1.35
58699695--58699787	28	3.2	28	73	14	84	58	2	6	33	1.36
58699695--58699801	29	3.8	28	72	14	85	59	2	5	31	1.35
58699695--58699811	57	2.0	58	87	9	168	60	2	5	30	1.34
58699972--58700045	38	1.9	38	83	0	94	32	4	4	59	1.35
58700060--58700113	19	2.9	18	81	13	56	38	0	0	61	0.96
58700050--58700116	10	7.0	10	70	13	52	37	0	0	62	0.95
58700037--58700127	47	2.0	45	82	8	112	36	1	0	62	1.02
58700138--58700355	88	2.5	89	84	5	284	30	8	21	39	1.83
58705408--58705445	11	3.5	11	85	0	58	55	10	13	21	1.67
58721747--58721777	16	1.9	16	100	0	62	32	12	48	6	1.67
58722242--58722570	179	1.9	175	82	6	412	28	19	19	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58722281--58722700	44	9.7	41	70	11	182	30	19	20	30	1.97
58722416--58722707	129	2.3	129	84	2	381	31	19	19	29	1.96
58722872--58723101	45	5.2	45	68	10	166	21	21	25	31	1.98
58722860--58723100	89	2.7	89	86	0	329	20	21	25	31	1.98
58723038--58723181	76	1.9	76	85	2	200	24	20	18	36	1.95
58723117--58723303	45	4.2	45	87	0	257	28	23	16	31	1.96
58723162--58723463	166	1.8	161	85	4	399	29	23	15	31	1.96
58723059--58723522	211	2.2	211	90	0	705	28	22	17	31	1.96
58723328--58723599	45	6.1	45	81	5	264	26	22	20	30	1.98
58724692--58724741	6	8.2	6	77	16	50	2	18	0	80	0.82
58724688--58724752	19	3.8	17	79	16	64	1	18	0	80	0.80
58724692--58724760	33	2.2	32	82	10	79	4	15	0	79	0.88
58727431--58727482	19	2.7	20	82	5	63	48	9	17	25	1.77
58727437--58727482	9	4.8	10	77	20	53	47	8	19	23	1.77
58729898--58729931	16	2.1	16	94	0	59	55	2	11	29	1.50
58734671--58734733	22	2.9	21	79	9	63	39	25	9	25	1.86
58736400--58736462	22	2.9	21	79	9	63	39	25	9	25	1.86
58740265--58740297	4	8.2	4	100	0	66	24	0	0	75	0.80
58742151--58742223	28	2.7	27	91	8	114	43	12	0	43	1.42
58742270--58742345	27	2.8	27	86	4	91	22	27	30	19	1.98
58742427--58742463	11	3.5	10	92	7	56	70	2	27	0	1.01
58742490--58742528	19	2.0	21	85	10	55	23	0	10	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58742598--58742644	3	15.7	3	100	0	94	0	0	31	68	0.90
58742862--58742898	12	3.1	12	92	0	56	21	0	16	62	1.33
58748569--58748593	12	2.1	12	100	0	50	8	16	8	68	1.38
58748959--58749066	4	25.2	4	75	19	78	0	31	0	67	0.97
58748934--58749000	22	3.1	23	70	18	63	0	31	0	68	0.90
58748898--58749065	40	4.1	43	80	13	151	0	31	0	67	0.95
58748919--58749062	45	3.2	45	80	11	136	0	33	0	65	0.97
58748964--58749063	35	2.8	36	82	11	118	1	31	0	68	0.97
58757193--58757225	15	2.1	16	88	5	50	21	0	9	69	1.15
58757726--58757774	19	2.6	19	80	6	55	34	2	4	59	1.28
58760684--58760752	29	2.5	27	83	9	77	60	2	1	34	1.20
58760706--58760864	28	5.6	28	68	8	90	63	1	3	31	1.21
58760770--58760924	57	2.7	57	72	7	127	61	3	5	29	1.33
58760749--58760855	10	11.2	10	69	11	55	68	1	4	25	1.19
58760785--58760881	29	3.4	29	79	11	101	60	3	5	30	1.34
58761182--58761232	19	2.9	17	78	16	50	35	5	0	58	1.22
58761278--58761467	94	2.0	93	85	7	251	31	8	18	41	1.81
58769067--58769177	55	2.0	55	98	0	213	30	21	17	30	1.96
58773548--58773686	41	3.4	41	89	0	188	25	25	20	28	1.99
58778390--58778487	41	2.4	41	82	0	124	26	26	19	27	1.99
58814533--58814572	17	2.2	19	86	8	57	67	2	2	27	1.16
58817658--58817710	27	2.0	27	88	3	81	18	11	41	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58821388--58821428	21	2.0	21	81	18	50	21	26	19	31	1.97
58830787--58830883	42	2.3	42	92	1	160	48	6	2	43	1.39
58830825--58830881	30	1.9	29	89	3	87	49	5	1	43	1.35
58830763--58830962	103	1.9	103	91	2	330	50	5	1	43	1.34
58830829--58830945	61	1.9	62	84	5	157	48	6	1	42	1.39
58834423--58834608	94	2.0	94	88	2	275	39	20	12	27	1.89
58835552--58835577	13	2.0	13	100	0	52	30	15	23	30	1.95
58838024--58838059	14	2.6	14	95	0	63	44	22	11	22	1.84
58838219--58838261	19	2.4	17	77	11	50	58	0	6	34	1.25
58840559--58840583	11	2.3	11	100	0	50	8	20	16	56	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213