genome.fa.s14.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  208  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62231836--62231878	18	2.3	18	77	14	52	30	0	4	65	1.13
62239581--62239679	23	4.3	23	94	0	171	21	21	25	32	1.98
62242946--62242975	2	15.0	2	92	0	51	46	0	0	53	1.00
62248826--62248868	22	1.9	23	85	4	61	34	6	0	58	1.25
62254273--62254321	9	5.4	9	75	0	53	40	22	12	24	1.88
62254273--62254321	18	2.7	18	83	0	71	40	22	12	24	1.88
62257072--62257138	30	2.2	30	82	15	77	53	7	8	29	1.59
62259906--62259930	12	2.1	12	100	0	50	24	36	24	16	1.94
62260091--62260133	9	4.8	9	91	0	59	44	25	6	23	1.78
62267309--62267626	162	2.0	163	91	3	516	29	25	13	31	1.94
62268490--62268561	32	2.2	32	87	0	108	34	20	12	31	1.90
62269224--62269272	21	2.3	20	75	6	53	36	0	0	63	0.95
62271521--62271611	47	1.9	47	84	8	123	62	2	3	31	1.23
62277752--62277791	17	2.4	16	84	12	53	40	2	0	57	1.12
62278555--62278608	20	2.7	19	80	11	54	33	3	22	40	1.71
62281713--62281776	3	21.3	3	84	6	85	31	1	34	32	1.68
62286564--62286589	5	5.2	5	100	0	52	61	0	0	38	0.96
62308067--62308095	15	1.9	15	100	0	58	17	13	48	20	1.81
62310104--62310161	28	2.1	28	83	6	73	46	0	3	50	1.18
62316672--62316753	16	5.1	16	79	15	71	84	7	4	3	0.87
62316672--62316753	33	2.5	31	82	5	92	84	7	4	3	0.87
62316675--62316739	8	7.9	8	80	11	69	84	9	3	3	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62317180--62317228	12	3.9	12	82	15	55	79	4	16	0	0.88
62318181--62318766	100	5.9	100	82	5	661	30	21	21	26	1.98
62318435--62318609	50	3.5	50	71	3	172	31	23	22	22	1.98
62318164--62318763	199	3.0	197	84	4	726	30	21	21	26	1.98
62318181--62318766	299	2.0	298	88	1	870	30	21	21	26	1.98
62318763--62318954	40	4.6	40	73	11	179	28	25	23	22	1.99
62318763--62318979	40	5.2	41	73	11	154	29	26	21	22	1.99
62318754--62319022	127	2.1	127	92	2	459	30	26	20	22	1.99
62320823--62321069	130	1.9	125	83	8	318	38	17	9	34	1.82
62322827--62322898	20	3.7	19	88	7	101	36	0	6	56	1.26
62326491--62326562	31	2.3	31	80	7	83	27	15	18	38	1.90
62330580--62330795	111	1.9	111	88	0	324	33	27	13	25	1.93
62334039--62334112	26	2.9	26	77	2	87	35	20	8	36	1.82
62335644--62335687	21	2.1	21	95	0	79	52	9	15	22	1.71
62343437--62343473	19	1.9	19	88	0	56	70	5	0	24	1.08
62344528--62344584	1	57.0	1	100	0	114	100	0	0	0	0.00
62362312--62362353	19	2.0	20	86	13	59	66	0	0	33	0.92
62370630--62370655	9	2.9	9	100	0	52	23	19	34	23	1.96
62370715--62370748	17	1.9	18	94	5	61	70	0	0	29	0.87
62374131--62374204	31	2.4	31	86	0	103	43	2	6	47	1.44
62375065--62375098	14	2.5	14	90	4	52	17	0	32	50	1.47
62385253--62385281	3	9.7	3	100	0	58	0	34	31	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62389225--62389299	33	2.3	33	92	0	123	48	13	6	32	1.68
62390279--62390432	82	1.9	82	94	0	272	27	18	29	24	1.98
62390244--62390471	82	3.0	73	81	12	269	28	19	29	23	1.98
62391232--62391257	11	2.4	11	100	0	52	80	0	0	19	0.71
62391855--62391900	20	2.4	19	85	10	58	41	0	6	52	1.27
62391863--62391907	19	2.4	18	77	3	54	40	0	4	55	1.20
62395053--62395093	21	2.0	21	90	0	64	19	29	21	29	1.98
62395639--62395670	13	2.5	13	100	0	64	18	15	15	50	1.79
62410204--62410336	64	2.1	65	91	1	214	29	27	14	28	1.95
62420363--62420400	18	2.1	18	85	9	51	71	2	23	2	1.12
62423394--62423450	21	2.7	22	86	5	73	3	5	24	66	1.28
62423513--62423554	12	3.6	12	75	18	52	23	4	4	66	1.30
62423512--62423564	23	2.3	23	96	0	97	24	3	11	60	1.47
62429810--62429847	15	2.6	16	84	16	55	68	2	0	28	1.03
62430816--62430871	29	1.9	29	96	0	103	33	0	8	57	1.30
62444987--62445031	22	2.0	24	82	8	58	6	28	2	62	1.33
62445230--62445268	3	13.0	3	100	0	78	66	0	33	0	0.92
62445411--62445453	3	14.3	3	90	0	68	0	32	0	67	0.91
62446912--62446973	30	2.1	30	90	6	99	22	4	14	58	1.56
62464603--62464659	21	2.8	20	76	7	51	50	15	12	21	1.76
62466207--62466233	12	2.2	12	100	0	54	29	0	11	59	1.32
62469069--62469093	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62487036--62487062	14	1.9	14	100	0	54	37	14	18	29	1.91
62488434--62488460	3	9.0	3	100	0	54	33	33	0	33	1.58
62494653--62494685	17	1.9	17	93	0	57	27	0	3	69	1.03
62495228--62495288	31	2.0	31	86	0	86	22	21	21	34	1.97
62495113--62495281	91	1.9	91	83	5	225	22	19	17	40	1.92
62495230--62495296	31	2.2	31	83	0	80	25	20	17	35	1.95
62495091--62495297	91	2.3	90	77	7	222	23	17	17	41	1.90
62499781--62499829	24	2.0	24	88	4	71	30	4	14	51	1.61
62502110--62502149	14	2.9	14	84	0	53	42	17	7	32	1.77
62502571--62502622	14	3.6	14	76	7	50	57	1	3	36	1.28
62511351--62511397	23	2.0	24	83	8	60	57	0	10	31	1.33
62516157--62516206	23	2.1	24	85	3	66	38	14	4	44	1.63
62516332--62516361	6	4.8	6	95	4	51	66	0	0	33	0.92
62517298--62517347	16	3.2	16	72	13	50	48	2	2	48	1.24
62517696--62517728	17	1.9	17	100	0	66	48	0	9	42	1.35
62519930--62519956	8	3.4	8	100	0	54	55	0	0	44	0.99
62523796--62523829	7	4.9	7	96	0	59	32	0	52	14	1.42
62528454--62528481	2	14.0	2	100	0	56	0	50	0	50	1.00
62528802--62528914	51	2.2	51	84	3	138	34	12	8	44	1.73
62530567--62530624	15	4.1	14	78	10	55	34	0	3	62	1.12
62536683--62536710	8	3.5	8	100	0	56	21	0	0	78	0.75
62536730--62536754	9	2.8	9	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62536755--62536810	29	2.0	28	86	6	78	28	3	0	67	1.07
62536779--62536817	20	2.0	20	95	5	71	35	0	0	64	0.94
62536691--62536802	41	2.8	39	76	7	127	34	3	0	61	1.13
62536782--62536823	19	2.2	19	83	8	50	38	0	0	61	0.96
62536781--62536824	20	2.3	19	88	4	61	36	0	0	63	0.95
62544242--62544272	15	2.1	15	93	0	53	22	6	25	45	1.76
62549374--62549662	83	3.5	81	79	11	250	41	23	5	29	1.77
62549658--62549948	79	3.6	80	79	7	311	39	24	8	27	1.84
62549446--62549846	218	1.8	217	87	1	588	40	23	7	27	1.82
62553724--62553755	12	2.8	12	95	4	57	34	0	6	59	1.23
62561500--62561542	15	2.8	16	79	10	54	44	0	2	53	1.13
62561481--62561654	42	4.3	41	67	19	116	43	1	4	50	1.30
62561437--62561657	119	1.9	119	98	0	424	42	1	6	49	1.38
62561619--62561660	15	2.7	16	82	14	52	45	0	2	52	1.13
62561610--62561651	15	2.9	15	82	10	52	47	0	0	52	1.00
62561788--62561892	44	2.5	40	76	15	113	31	29	4	34	1.78
62561786--62561895	45	2.6	44	81	8	131	31	29	5	33	1.80
62561874--62561943	16	4.4	16	94	0	104	34	34	1	30	1.67
62562385--62562414	14	2.1	14	100	0	60	46	40	0	13	1.43
62563355--62563385	4	7.8	4	92	0	53	22	0	22	54	1.44
62565659--62565737	41	1.9	40	92	5	131	44	20	5	30	1.73
62569594--62569636	14	3.0	14	75	3	50	62	4	0	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62571139--62571191	27	1.9	28	81	11	65	26	15	5	52	1.64
62571658--62572032	187	2.0	187	97	0	714	36	14	15	32	1.89
62574341--62574374	3	11.3	3	100	0	68	67	0	0	32	0.91
62576270--62576363	48	1.9	50	80	8	113	57	9	2	30	1.43
62588195--62588229	4	8.8	4	87	12	54	48	25	22	2	1.64
62590543--62590602	31	1.9	31	89	0	93	26	16	16	40	1.90
62595604--62595638	13	2.7	13	100	0	70	48	0	14	37	1.44
62601167--62601201	13	2.5	14	90	9	54	48	0	17	34	1.47
62611737--62611856	41	2.9	40	83	2	132	31	23	16	28	1.96
62625015--62625045	14	2.2	14	94	0	53	48	6	0	45	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213