genome.fa.s14.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  161  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48215922--48217179	265	4.8	263	86	4	1685	28	18	23	28	1.98
48218602--48218628	13	2.1	13	100	0	54	29	0	0	70	0.88
48218680--48218757	27	3.0	26	79	7	86	37	7	6	48	1.57
48222942--48222978	16	2.3	16	95	0	65	21	37	5	35	1.77
48227511--48227581	30	2.3	30	95	2	124	50	7	8	33	1.60
48228009--48228034	6	4.3	6	100	0	52	19	0	0	80	0.71
48228674--48228878	92	2.2	92	88	2	306	44	5	12	37	1.65
48232918--48233015	20	4.9	20	68	5	81	17	31	19	31	1.95
48232910--48233028	40	3.0	41	86	7	172	19	27	19	33	1.96
48235706--48235844	57	2.4	57	85	0	188	32	17	23	26	1.97
48235906--48235968	28	2.2	29	78	13	69	26	20	19	33	1.96
48238036--48238113	27	2.9	27	90	1	113	33	15	23	28	1.95
48238075--48238244	54	3.2	54	72	20	183	37	16	23	22	1.94
48238117--48238297	53	3.4	53	75	18	194	39	17	23	19	1.92
48238075--48238297	107	2.1	107	93	0	383	37	17	23	21	1.94
48238355--48238409	27	2.0	27	85	0	74	30	14	32	21	1.93
48240769--48240879	18	5.6	19	71	17	84	58	0	2	38	1.12
48240784--48240820	11	3.4	11	96	0	65	54	0	5	40	1.24
48240769--48240878	40	2.7	40	90	2	166	59	0	2	38	1.12
48240844--48240876	16	2.0	17	94	5	59	60	0	0	39	0.97
48240845--48240889	17	2.6	17	82	10	56	60	0	0	40	0.97
48249479--48249750	96	2.8	97	82	6	329	37	2	16	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48249789--48250205	126	3.3	126	90	0	674	31	18	22	27	1.97
48252599--48252639	21	2.0	21	85	0	55	4	21	41	31	1.74
48254771--48254820	22	2.3	21	83	10	64	48	0	28	24	1.52
48254771--48254820	10	4.6	10	79	16	55	48	0	28	24	1.52
48259911--48260220	35	8.8	35	74	4	248	27	7	30	33	1.85
48266012--48266061	21	2.4	21	89	0	73	32	30	8	30	1.86
48267339--48267398	27	2.2	27	87	0	84	13	18	36	31	1.89
48269197--48269233	18	2.1	18	89	0	56	24	18	18	37	1.94
48269676--48269734	24	2.5	24	80	5	75	42	25	11	20	1.86
48274193--48274233	8	5.0	8	88	5	64	41	0	0	58	0.98
48274304--48274337	4	8.5	4	87	12	52	76	0	23	0	0.79
48275439--48275573	39	3.5	36	72	13	92	22	20	28	28	1.99
48276232--48276282	17	3.0	17	94	0	84	39	13	13	33	1.84
48280668--48280760	29	3.2	28	80	1	96	26	21	24	26	1.99
48280684--48280767	28	3.0	28	82	1	96	26	25	23	25	2.00
48286446--48286475	7	4.4	7	95	4	53	46	13	0	40	1.43
48286699--48286750	24	2.2	22	72	21	52	32	19	0	48	1.49
48289495--48289532	12	2.8	14	88	11	53	65	0	0	34	0.93
48289752--48289790	19	2.0	21	85	10	55	69	5	10	15	1.34
48289976--48290072	21	4.7	21	87	5	144	36	12	12	39	1.81
48289989--48290092	19	5.3	19	82	6	118	37	13	11	37	1.81
48289989--48290091	40	2.6	40	90	0	161	37	12	11	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48290429--48290517	44	2.0	44	87	8	128	25	21	20	32	1.97
48290535--48290861	44	7.5	43	68	13	159	28	22	21	28	1.99
48290445--48290909	217	2.1	217	90	0	723	28	23	20	27	1.99
48290906--48291414	132	3.9	132	94	0	883	25	24	19	31	1.98
48291368--48291457	47	1.9	47	95	0	162	32	25	13	28	1.93
48291236--48291598	179	2.0	178	93	1	611	27	23	18	30	1.98
48291104--48291724	311	2.0	310	93	0	1073	26	24	18	30	1.98
48291517--48291964	44	10.2	43	64	13	146	26	23	18	31	1.98
48291415--48292780	132	10.4	132	90	0	2025	25	24	18	31	1.98
48290906--48291988	574	1.9	575	91	1	1805	26	24	18	30	1.98
48292176--48294697	44	57.2	44	62	10	289	25	23	18	31	1.97
48292734--48292830	47	2.1	47	96	0	176	30	26	13	28	1.94
48292600--48292955	179	2.0	179	91	1	570	27	24	16	31	1.97
48292470--48293091	311	2.0	311	91	0	1021	26	24	18	31	1.98
48292781--48293618	132	6.4	132	92	0	1302	26	23	19	31	1.98
48293572--48293661	47	1.9	47	97	0	171	31	25	14	28	1.95
48293440--48293794	179	2.0	179	92	1	595	27	23	18	30	1.97
48292470--48294193	575	3.0	574	83	3	1854	26	23	18	31	1.98
48293619--48294985	132	10.4	132	89	0	1980	25	23	18	31	1.98
48293176--48294064	443	2.0	443	92	0	1467	26	23	18	31	1.97
48294942--48295035	47	2.0	47	91	4	154	30	27	11	29	1.92
48294807--48295159	179	2.0	178	88	0	526	27	24	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48305590--48305778	19	9.7	19	69	14	109	31	4	2	61	1.26
48305634--48305726	30	3.1	27	76	15	87	32	4	1	62	1.22
48305634--48305719	29	2.9	29	80	13	86	31	4	1	62	1.23
48305654--48305835	20	9.3	19	70	17	88	34	2	1	62	1.17
48305773--48305849	29	2.8	27	76	9	68	31	1	1	66	1.08
48308658--48308707	14	3.6	14	72	20	50	28	8	26	38	1.84
48317087--48317160	36	2.1	36	100	0	148	32	24	5	37	1.78
48319422--48319706	50	5.6	50	86	3	320	23	29	20	26	1.98
48319422--48319706	100	2.8	100	84	3	354	23	29	20	26	1.98
48330063--48330134	36	2.0	36	84	10	94	36	5	4	54	1.43
48333144--48333177	16	2.1	16	94	0	59	52	0	35	11	1.38
48334498--48334555	31	1.9	30	89	10	91	63	10	12	13	1.51
48342480--48342523	22	2.0	23	81	4	54	40	13	9	36	1.76
48357119--48357160	15	2.9	14	76	16	50	64	0	0	35	0.94
48357114--48357152	14	2.9	14	85	11	55	69	0	0	30	0.89
48357102--48357172	27	2.6	27	75	4	70	59	0	0	40	0.98
48357391--48357428	19	2.0	19	100	0	76	47	5	15	31	1.68
48357426--48357452	3	9.0	3	100	0	54	66	0	0	33	0.92
48363826--48363894	35	2.0	33	86	5	93	39	4	8	47	1.54
48364184--48364255	37	1.9	37	100	0	144	40	15	5	38	1.70
48365528--48365633	44	2.4	44	93	1	176	43	29	6	20	1.77
48365906--48365946	14	2.9	14	85	0	55	19	9	51	19	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48366227--48366256	14	2.1	14	93	0	51	13	10	60	16	1.59
48369640--48369697	19	2.9	19	82	12	55	72	1	0	25	0.94
48374222--48374292	25	2.9	25	83	4	83	39	18	21	21	1.93
48377302--48377353	27	2.0	26	85	11	70	30	7	1	59	1.36
48377367--48377421	27	2.0	27	86	13	78	61	0	3	34	1.13
48377656--48377702	24	2.0	24	87	4	69	23	10	0	65	1.23
48381405--48381438	17	2.0	17	88	0	50	41	32	8	17	1.80
48385676--48385729	24	2.2	24	83	6	65	55	5	3	35	1.41
48390547--48390601	27	2.0	27	86	6	76	30	30	10	27	1.91
48393876--48393951	37	2.1	37	97	0	143	39	11	11	36	1.79
48395029--48395217	50	3.6	51	80	9	179	28	20	28	22	1.99
48395466--48395504	12	3.2	12	85	0	51	51	5	23	20	1.67
48408474--48408689	45	4.8	45	86	2	276	26	15	24	33	1.95
48420906--48420930	13	1.9	13	100	0	50	88	0	0	12	0.53
48436172--48436316	41	3.5	41	85	0	182	33	25	21	19	1.97
48439535--48439573	20	2.0	20	85	10	53	17	20	5	56	1.60
48439815--48439923	50	2.2	50	84	0	137	21	23	22	33	1.98
48439835--48439939	50	2.1	50	85	0	147	20	27	20	30	1.98
48447000--48447037	15	2.5	15	95	0	67	55	0	23	21	1.44
48447221--48447258	15	2.5	15	95	0	67	55	0	23	21	1.44
48449203--48449232	6	4.8	6	95	4	51	80	0	20	0	0.72
48450572--48450611	20	2.0	20	90	0	62	35	0	2	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48456706--48456742	18	2.0	19	89	5	58	32	16	5	45	1.70
48467101--48467133	16	2.0	17	94	5	59	39	0	0	60	0.97
48467117--48467179	23	2.8	22	78	4	72	36	4	0	58	1.19
48467110--48467216	34	2.9	36	84	10	146	34	4	0	59	1.24
48467753--48467798	18	2.5	19	72	10	51	43	4	32	19	1.71
48476669--48477070	47	8.6	47	90	0	570	34	12	27	25	1.92
48477084--48477174	46	2.0	46	84	0	119	34	7	31	26	1.85
48485128--48485374	50	4.8	50	82	5	221	22	26	21	29	1.99
48487104--48487149	22	2.0	22	83	4	56	50	10	15	23	1.75
48488552--48488620	34	2.0	34	100	0	138	44	11	14	28	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213