Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  213  of  213  ( 25468 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64383288--64383331
10
4.4
10
81
18
56
47
11
0
40
1.39
64383281--64383323
19
2.2
20
91
4
70
48
6
0
44
1.29
64386028--64386068
21
2.0
21
95
0
73
36
17
4
41
1.71
64395868--64395954
27
3.4
27
62
18
67
16
14
9
59
1.59
64395858--64395956
50
2.0
50
100
0
198
19
14
10
56
1.66
64401957--64402008
9
5.8
9
93
0
86
23
7
30
38
1.83
64402903--64403066
87
1.9
87
89
2
258
38
21
19
20
1.94
64417082--64417160
40
2.0
40
87
0
113
35
3
10
50
1.54
64420815--64420853
16
2.4
16
87
12
53
66
5
0
28
1.12
64428373--64428438
32
2.1
32
100
0
132
51
3
36
9
1.49
64434929--64434994
31
2.1
31
86
5
89
45
7
10
36
1.67
64435569--64435606
19
2.0
19
100
0
76
26
26
21
26
1.99
64435852--64435927
34
2.2
34
92
0
125
26
6
31
35
1.82
64440919--64440982
32
2.0
33
84
3
85
25
20
1
53
1.55
64440940--64440989
18
2.6
19
87
6
66
22
22
2
54
1.55
64447518--64447544
6
4.5
6
100
0
54
33
33
14
18
1.92
64449263--64449306
16
2.8
16
86
6
54
29
0
13
56
1.38
64451012--64451057
22
2.1
22
84
8
58
8
8
2
80
0.99
64458517--64458553
2
18.5
2
100
0
74
0
48
0
51
1.00
64468551--64468589
20
2.0
20
85
14
55
61
0
2
35
1.10
64473376--64473440
7
9.6
7
83
12
64
6
0
50
43
1.27
64473363--64473422
28
2.1
28
84
6
77
6
1
45
46
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64473369--64473455
6
13.5
6
83
9
75
4
1
54
40
1.29
64473365--64473457
13
7.1
13
76
13
84
4
1
52
41
1.28
64473403--64473541
6
23.2
6
82
9
108
0
2
69
28
1.01
64473464--64473500
1
37.0
1
94
0
56
0
0
94
5
0.30
64473404--64473541
13
11.4
13
83
9
109
0
2
69
28
1.00
64473404--64473541
19
7.3
19
81
5
118
0
2
69
28
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213

The End!