genome.fa.s14.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  35  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9400956--9401029	30	2.4	31	80	8	89	17	31	0	51	1.46
9400955--9401029	29	2.5	31	80	14	93	17	30	0	52	1.45
9405286--9405384	41	2.4	41	84	3	128	29	23	20	27	1.99
9408605--9408677	34	2.2	34	87	4	105	13	28	0	57	1.37
9415551--9415643	25	3.7	25	74	9	82	27	21	27	22	1.99
9415553--9415651	50	2.0	49	86	5	137	28	20	28	23	1.99
9415559--9415717	25	6.4	24	69	12	65	32	20	26	21	1.97
9415584--9415767	25	7.4	25	69	11	101	34	18	26	20	1.96
9415638--9415767	50	2.6	49	81	10	131	38	17	23	20	1.93
9423250--9423307	28	2.1	28	83	0	71	37	20	18	22	1.94
9423259--9423320	28	2.2	28	79	0	70	45	19	17	17	1.86
9425531--9425657	60	2.1	61	82	10	154	40	4	9	44	1.58
9426317--9426422	14	7.2	14	67	19	56	37	36	8	16	1.80
9426317--9426358	15	2.9	14	89	7	57	38	38	9	14	1.78
9426343--9426382	20	2.0	20	90	0	62	35	35	12	17	1.88
9426327--9426398	34	2.1	34	85	10	94	37	38	8	15	1.77
9436045--9436100	3	18.7	3	100	0	112	32	0	0	67	0.91
9436101--9436284	72	2.6	72	99	0	359	27	6	23	41	1.79
9440502--9440551	3	16.7	3	100	0	100	32	0	0	68	0.90
9440552--9440735	72	2.6	72	99	0	359	27	6	23	41	1.79
9445939--9446028	12	8.0	12	71	18	52	68	0	0	31	0.89
9445938--9445989	27	2.0	25	88	7	77	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9445938--9446023	37	2.3	38	72	11	61	69	0	0	30	0.88
9445967--9446017	20	2.7	18	83	16	68	66	0	0	33	0.92
9445970--9446038	19	3.5	20	81	15	81	63	0	0	36	0.94
9446016--9446057	18	2.3	18	87	4	57	59	4	2	33	1.31
9446327--9446363	11	3.5	11	85	7	58	27	5	0	67	1.12
9446321--9446363	21	2.0	21	95	0	77	25	4	0	69	1.07
9446265--9446459	29	6.8	29	71	9	105	28	5	1	65	1.23
9446233--9446353	48	2.5	49	73	8	122	28	5	2	63	1.30
9446329--9446363	10	3.4	10	88	4	52	25	5	0	68	1.11
9446331--9446430	47	2.1	48	84	1	130	30	4	1	65	1.18
9446331--9446450	47	2.5	45	76	11	114	27	3	1	67	1.16
9446459--9446486	7	4.0	7	100	0	56	28	42	14	14	1.84
9448547--9448637	30	3.0	30	95	0	155	43	16	4	35	1.68
9450003--9450060	30	1.9	30	89	0	89	37	3	24	34	1.72
9450449--9450641	50	3.9	49	78	3	172	28	21	27	21	1.99
9456076--9456120	22	2.0	22	87	8	65	48	0	0	51	1.00
9456916--9456940	12	2.1	12	100	0	50	40	0	8	52	1.31
9470938--9470963	5	5.2	5	100	0	52	0	42	0	57	0.98
9473605--9473659	21	2.6	21	94	0	92	32	9	29	29	1.88
9476135--9476174	21	1.9	21	84	0	53	37	0	20	42	1.52
9476730--9476803	24	3.1	24	86	3	96	13	27	22	36	1.92
9476640--9476813	73	2.4	75	77	9	171	14	25	22	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9476740--9476811	24	3.0	23	84	10	90	15	26	23	34	1.94
9478444--9478519	36	2.1	37	82	7	93	51	0	9	39	1.34
9479047--9479093	23	2.0	24	87	4	69	38	17	6	38	1.75
9483009--9483043	15	2.4	14	90	9	52	42	0	11	45	1.40
9485104--9485146	22	2.0	22	90	0	68	9	20	25	44	1.81
9485247--9485373	44	2.9	44	88	1	184	23	21	27	27	1.99
9485357--9485564	86	2.4	86	83	0	254	27	31	18	22	1.97
9485231--9485564	43	7.7	43	78	2	202	26	27	22	23	1.99
9485915--9485985	21	3.4	21	80	0	79	5	42	15	36	1.71
9485956--9486102	66	2.2	66	88	7	210	13	29	17	39	1.88
9485956--9486126	66	2.6	64	86	6	200	13	28	18	39	1.89
9491541--9492009	9	53.2	9	68	20	151	39	1	14	44	1.56
9491560--9491719	25	6.2	25	76	11	135	38	1	15	45	1.54
9491546--9491669	16	7.9	16	72	18	109	35	1	16	45	1.58
9491727--9491758	16	2.0	16	100	0	64	31	0	25	43	1.55
9491656--9492156	31	16.5	31	71	18	289	39	1	13	45	1.52
9491843--9491874	16	2.0	16	100	0	64	31	0	25	43	1.55
9491687--9491948	116	2.3	115	97	0	497	40	1	14	43	1.53
9491976--9492039	14	4.1	14	73	23	56	43	0	6	50	1.27
9492024--9492067	22	2.0	22	95	0	79	40	0	11	47	1.39
9492111--9492210	9	11.1	9	74	19	68	38	0	15	47	1.45
9492143--9492175	16	2.1	16	100	0	66	30	0	24	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9492112--9492209	47	2.0	49	86	5	137	36	0	15	47	1.45
9492274--9492306	16	2.1	16	100	0	66	30	18	0	51	1.46
9493169--9493230	33	1.9	32	90	3	97	66	14	0	19	1.26
9493587--9493676	38	2.4	38	96	0	171	46	12	20	21	1.82
9495033--9495073	7	5.9	7	94	0	55	31	39	0	29	1.57
9495002--9495067	14	4.6	14	78	9	53	33	33	0	33	1.58
9495033--9495113	21	3.9	21	78	3	56	37	44	0	18	1.50
9495062--9495095	7	4.9	7	96	0	59	41	55	0	2	1.15
9495048--9495113	7	9.4	7	82	12	55	39	48	0	12	1.40
9495101--9495331	87	2.6	89	94	4	414	45	24	2	28	1.65
9495275--9495415	67	2.1	65	82	11	162	45	20	0	33	1.57
9495443--9495481	20	2.0	20	89	0	60	30	38	0	30	1.58
9496183--9496362	41	4.4	41	89	3	272	16	16	27	40	1.89
9496815--9496884	16	4.4	16	67	16	56	27	1	21	50	1.57
9496817--9496897	23	3.5	23	72	22	80	23	1	24	50	1.56
9496908--9496948	22	1.9	21	85	14	57	19	0	24	56	1.42
9501059--9501116	29	2.0	29	100	0	116	31	24	3	41	1.71
9501245--9501301	9	6.7	9	76	9	57	42	12	1	43	1.52
9501268--9501299	16	2.0	16	93	0	55	46	12	0	40	1.42
9501394--9501463	12	6.0	12	80	6	81	48	17	2	31	1.61
9501411--9501463	22	2.3	24	87	6	74	52	16	0	30	1.44
9501517--9501865	9	38.2	9	77	8	348	45	18	4	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9501527--9501858	156	2.1	155	99	0	655	46	18	4	31	1.68
9501639--9501865	100	2.3	100	90	1	348	45	19	3	31	1.69
9502074--9502249	11	17.2	11	73	18	80	35	3	0	60	1.13
9502064--9502265	40	4.8	39	78	17	192	37	2	0	59	1.13
9502113--9502241	50	2.5	51	94	3	233	36	3	0	60	1.12
9502153--9502265	11	10.9	11	79	16	93	41	2	0	55	1.14
9502449--9503076	9	69.0	9	77	5	602	47	17	3	31	1.64
9502449--9503076	91	6.9	90	81	5	602	47	17	3	31	1.64
9502432--9503076	155	4.2	152	82	4	440	47	17	3	31	1.64
9508416--9508551	66	2.1	66	90	0	209	41	17	26	14	1.88
9508900--9509071	43	4.1	43	89	3	253	25	18	29	27	1.98
9508900--9509071	85	2.0	83	87	4	247	25	18	29	27	1.98
9508900--9509071	42	4.1	42	85	8	226	25	18	29	27	1.98
9509218--9509348	39	3.4	39	86	8	187	31	22	23	22	1.99
9525681--9525741	23	2.7	22	72	7	59	63	4	3	27	1.30
9536789--9536842	27	2.0	28	82	10	67	31	1	1	64	1.14
9536789--9536842	28	1.9	28	85	7	74	31	1	1	64	1.14
9536788--9536849	28	2.2	28	80	5	72	32	1	1	64	1.13
9539815--9539963	44	3.4	42	82	14	194	16	14	26	42	1.87
9539815--9539975	43	3.7	43	82	13	195	16	16	27	40	1.89
9540505--9540546	22	1.9	22	85	9	59	19	0	23	57	1.41
9544511--9544568	29	2.0	29	100	0	116	31	24	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9544696--9544752	9	6.7	9	76	9	57	42	12	1	43	1.52
9544719--9544750	16	2.0	16	93	0	55	46	12	0	40	1.42
9544845--9544913	12	6.0	12	76	10	72	47	17	2	31	1.62
9544846--9544932	33	2.7	33	84	7	99	49	19	2	28	1.60
9544966--9545313	9	38.2	9	78	7	355	45	18	4	31	1.68
9545087--9545313	100	2.3	100	90	1	348	45	19	3	31	1.69
9545519--9545699	50	3.8	49	84	10	209	36	3	0	60	1.13
9545513--9545712	40	4.7	40	80	16	199	37	3	0	60	1.12
9545602--9545715	11	11.1	10	79	14	76	42	2	0	55	1.14
9545603--9545713	10	10.8	10	78	18	70	41	2	0	55	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213