genome.fa.s14.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  156  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46724781--46724849	28	2.5	28	83	4	95	24	18	27	28	1.98
46726173--46726209	14	2.7	13	84	15	56	43	0	2	54	1.14
46737245--46737283	21	1.9	20	84	5	51	20	28	30	20	1.98
46737966--46738000	18	2.0	18	88	5	54	42	5	17	34	1.73
46752190--46752298	37	2.9	37	93	0	173	27	33	18	20	1.96
46752387--46752896	47	10.7	47	93	2	792	28	29	9	32	1.88
46752387--46752896	96	5.4	94	93	3	792	28	29	9	32	1.88
46756809--46756833	12	2.1	12	100	0	50	56	0	0	44	0.99
46757840--46757887	2	24.0	2	100	0	96	50	50	0	0	1.00
46759983--46760016	18	1.9	18	88	5	52	64	11	0	23	1.26
46763716--46763832	59	2.0	60	94	1	209	39	7	19	33	1.80
46765038--46765075	19	2.0	20	85	15	53	13	7	5	73	1.22
46774224--46774248	12	2.1	12	100	0	50	24	0	16	60	1.36
46776844--46776900	27	2.1	27	100	0	114	29	29	21	19	1.97
46779759--46779810	24	2.2	24	82	6	61	55	5	1	36	1.35
46781723--46781774	24	2.2	24	85	0	68	53	5	3	36	1.43
46782410--46782498	44	2.0	44	84	0	115	48	4	8	38	1.55
46786383--46786431	24	2.0	25	84	11	66	61	8	4	26	1.42
46787146--46787202	25	2.3	24	79	8	62	0	43	0	56	0.99
46787146--46787209	25	2.6	24	73	14	60	0	40	0	59	0.97
46791948--46792133	59	3.1	58	68	17	155	42	2	3	51	1.34
46792007--46792194	61	3.1	60	66	17	145	43	3	5	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46791943--46792229	120	2.4	120	89	2	459	44	2	4	48	1.35
46792008--46792191	59	3.1	59	65	21	130	42	3	5	47	1.44
46792356--46792460	44	2.5	40	77	15	122	32	29	4	33	1.78
46792354--46792463	45	2.6	44	83	8	140	32	29	5	32	1.80
46792442--46792479	16	2.4	16	95	0	67	31	31	0	36	1.58
46796500--46796543	20	2.3	19	80	7	52	50	2	11	36	1.51
46797204--46797272	26	2.7	26	76	0	66	14	24	21	39	1.91
46797251--46797331	25	3.3	25	72	10	78	18	29	22	29	1.97
46813308--46813424	52	2.5	43	75	22	135	35	25	11	27	1.91
46813306--46813410	52	2.0	52	98	0	201	34	26	12	26	1.92
46833434--46834052	320	1.9	320	97	0	1184	25	18	18	37	1.94
46834596--46834763	25	6.8	25	81	4	169	26	20	21	31	1.98
46835822--46835850	12	2.4	12	100	0	58	37	6	6	48	1.57
46835840--46835888	22	2.2	22	92	0	80	40	4	22	32	1.73
46838268--46838417	51	3.0	51	88	7	245	41	7	24	26	1.81
46838268--46838409	47	2.9	47	92	4	230	41	7	24	26	1.82
46845022--46845060	20	1.9	21	89	5	62	46	2	15	35	1.60
46846125--46846207	42	2.0	42	90	0	130	43	19	24	13	1.86
46846124--46846198	21	3.6	21	89	7	116	42	20	24	13	1.87
46846784--46846822	18	2.2	18	100	0	78	51	23	0	25	1.49
46848019--46848174	39	3.9	39	85	4	188	38	28	18	14	1.90
46848633--46848680	21	2.4	19	82	10	60	22	10	0	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46853800--46853918	61	2.0	61	96	1	222	28	13	10	47	1.77
46855069--46855099	14	2.2	14	100	0	62	16	0	45	38	1.47
46855473--46855552	41	2.0	41	97	0	151	22	6	21	50	1.71
46861245--46861284	16	2.4	16	87	8	53	55	0	0	45	0.99
46861271--46861306	17	2.1	17	89	0	54	69	8	2	19	1.27
46880638--46880719	40	2.0	40	88	4	121	29	10	23	36	1.89
46890268--46890313	24	1.9	24	86	0	65	21	4	2	71	1.14
46891519--46891563	6	7.5	6	100	0	90	17	33	0	48	1.48
46902684--46902741	27	2.2	26	78	6	62	56	10	8	24	1.60
46907845--46908013	26	6.5	25	70	9	99	37	25	13	23	1.92
46907850--46908024	52	3.4	51	79	3	161	37	25	13	24	1.92
46907864--46908018	26	6.0	26	76	4	134	36	25	13	23	1.92
46910459--46910518	9	6.4	10	74	11	56	35	0	1	63	1.05
46910459--46910513	19	2.8	19	80	2	65	38	0	1	60	1.08
46910696--46910729	13	2.8	12	86	8	50	67	2	0	29	1.05
46911634--46911691	11	5.2	11	82	2	62	22	32	1	43	1.64
46911634--46911710	22	3.4	23	79	13	81	24	32	1	41	1.63
46911633--46911709	11	6.9	11	71	20	54	24	31	1	42	1.63
46911669--46911768	51	2.0	51	86	4	139	26	26	3	45	1.68
46912909--46912934	7	3.7	7	100	0	52	26	0	15	57	1.38
46913865--46913911	21	2.2	21	85	7	60	36	36	21	6	1.79
46913879--46913927	21	2.3	21	86	6	64	32	36	24	6	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46914174--46914227	27	2.0	27	92	0	90	40	37	0	22	1.54
46914195--46914772	21	27.0	21	85	3	726	44	29	0	25	1.58
46914195--46914772	43	13.5	42	87	1	726	44	29	0	25	1.58
46917203--46917246	17	2.5	18	85	7	63	65	2	2	29	1.16
46917562--46917595	10	3.6	10	92	7	54	55	5	0	38	1.24
46919218--46919592	50	7.5	50	70	2	277	21	26	24	28	1.99
46919138--46919602	100	4.7	100	90	1	704	22	26	23	28	1.99
46921044--46921092	7	7.0	7	82	17	66	14	16	0	69	1.19
46921044--46921092	15	3.5	14	89	10	66	14	16	0	69	1.19
46921601--46921687	1	87.0	1	72	0	57	0	11	3	85	0.72
46921601--46921681	15	5.4	15	77	14	71	0	12	3	83	0.76
46921600--46921688	22	4.0	21	79	16	92	0	11	5	83	0.81
46921601--46921687	16	5.7	15	77	13	79	0	11	3	85	0.72
46925752--46925843	28	3.6	25	75	15	71	55	2	6	35	1.38
46926142--46926194	28	2.0	26	85	14	72	60	5	0	33	1.20
46926148--46926200	22	2.5	21	77	19	56	62	7	0	30	1.23
46929030--46929591	126	4.5	126	87	1	734	29	22	16	30	1.96
46929025--46929591	253	2.3	250	86	1	767	29	22	16	30	1.96
46929820--46929928	40	2.7	38	78	8	92	20	31	26	22	1.98
46930267--46930333	32	2.1	31	91	8	109	46	2	1	49	1.26
46935892--46935928	4	9.2	4	93	0	65	21	0	27	51	1.48
46938766--46938807	20	2.2	19	86	4	57	42	2	0	54	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46945657--46945697	14	2.9	15	79	13	52	17	2	7	73	1.17
46947901--46947965	26	2.5	26	85	7	78	24	7	1	66	1.27
46951943--46951983	21	1.9	21	85	5	55	31	41	19	7	1.79
46954348--46954385	16	2.4	16	86	8	51	57	0	13	28	1.36
46956494--46956619	47	2.7	46	81	7	155	30	15	26	26	1.96
46957670--46957715	21	2.2	21	88	0	65	19	39	19	21	1.93
46959489--46959527	18	2.2	18	100	0	78	48	20	5	25	1.70
46968471--46968518	25	1.9	25	86	0	69	22	27	20	29	1.99
46968529--46968599	25	2.8	25	72	4	63	23	28	16	30	1.97
46978140--46978170	15	2.1	15	100	0	62	19	22	6	51	1.69
46982130--46982506	125	3.0	123	87	2	531	30	10	21	37	1.87
46983419--46983464	12	3.4	14	80	16	53	28	0	13	58	1.35
46985367--46985420	26	2.1	26	86	6	74	31	20	22	25	1.98
46985947--46986004	13	4.5	13	72	8	55	32	5	10	51	1.58
46991791--46991829	3	13.3	3	83	5	53	25	2	2	69	1.14
46993649--46993688	18	2.2	18	91	8	64	65	0	0	35	0.93
46993712--46993769	27	2.2	25	85	11	73	56	1	6	34	1.36
47000721--47000898	27	6.6	27	83	3	178	29	28	15	26	1.96
47007297--47007321	1	25.0	1	100	0	50	0	0	0	100	0.00
47008630--47008807	27	6.6	27	84	3	205	29	28	15	26	1.96
47008651--47008806	82	1.9	81	88	3	233	29	28	15	26	1.96
47022600--47022632	17	2.1	16	88	11	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47022661--47022717	25	2.3	25	90	6	89	56	1	8	33	1.41
47029654--47029831	27	6.6	27	83	3	178	29	28	15	26	1.96
47037841--47038099	27	9.6	27	83	4	216	28	27	16	27	1.97
47037841--47038098	54	4.8	54	81	6	263	28	27	16	27	1.97
47037894--47038098	81	2.5	81	98	0	392	27	27	17	27	1.97
47044807--47045066	81	3.2	81	81	5	292	34	26	19	20	1.96
47044801--47045066	41	6.5	40	84	5	284	33	25	18	21	1.96
47057605--47057668	27	2.4	27	81	0	74	37	34	15	12	1.85
47057612--47057663	27	1.9	27	88	0	77	40	36	11	11	1.78
47058742--47058780	11	3.5	11	92	0	60	25	2	41	30	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213