genome.fa.s14.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  41  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10966084--10966117	17	2.0	17	88	0	50	14	2	23	58	1.50
10966627--10966691	24	2.8	24	88	6	89	32	1	6	60	1.31
10977402--10977438	15	2.5	15	87	12	51	40	2	0	56	1.13
10977711--10978806	109	10.1	109	93	0	1863	31	17	17	33	1.93
10982783--10982829	25	1.9	24	82	4	58	55	21	4	19	1.60
10983442--10983712	78	3.5	78	77	7	203	47	9	10	31	1.71
10983469--10983846	154	2.4	154	81	4	424	48	9	9	32	1.68
10983446--10983894	77	5.8	77	77	6	367	47	9	10	32	1.70
10983747--10983789	19	2.3	19	83	0	50	53	6	2	37	1.41
10984163--10984307	41	3.5	41	74	9	109	34	26	21	17	1.96
10985499--10985551	25	2.1	26	85	3	72	32	7	26	33	1.84
10988217--10988375	24	7.0	23	76	16	127	50	3	8	37	1.48
10988298--10988406	46	2.4	44	84	13	134	54	3	4	37	1.39
10995492--10995529	19	2.2	17	86	13	51	18	2	31	47	1.62
11000797--11000864	29	2.3	29	80	7	75	63	5	1	29	1.27
11001037--11001068	14	2.3	14	100	0	64	31	46	15	6	1.71
11006162--11006193	14	2.3	14	100	0	64	31	46	15	6	1.71
11011582--11011878	146	2.0	146	95	0	531	39	15	19	26	1.91
11014931--11015050	36	3.3	35	82	11	136	40	30	15	14	1.86
11017561--11017587	14	1.9	14	100	0	54	62	7	0	29	1.22
11017570--11017609	18	2.2	18	86	4	53	57	10	2	30	1.45
11019079--11019121	21	2.0	21	82	8	52	55	9	4	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11021039--11021076	19	2.0	19	100	0	76	31	10	26	31	1.90
11024447--11024483	9	4.1	9	85	0	56	48	13	8	29	1.71
11025399--11025438	20	2.0	20	90	0	62	50	12	10	27	1.72
11025387--11025453	34	1.9	35	87	3	100	46	11	8	32	1.72
11026137--11026163	5	5.4	5	100	0	54	22	18	18	40	1.91
11031440--11031506	9	7.4	9	80	6	82	28	10	17	43	1.82
11031440--11031507	27	2.5	27	85	0	91	27	10	17	44	1.81
11033940--11033970	16	1.9	16	100	0	62	38	32	19	9	1.84
11037206--11037261	25	2.2	26	90	3	87	37	19	12	30	1.89
11038501--11038610	41	2.7	41	88	1	168	18	21	28	31	1.97
11039073--11039109	19	1.9	19	89	10	58	32	8	13	45	1.73
11038921--11039146	77	3.0	77	78	7	253	31	12	10	45	1.75
11039351--11039383	16	2.1	16	100	0	66	18	0	12	69	1.18
11039420--11039485	31	2.2	30	91	5	107	22	21	9	46	1.79
11039526--11039556	13	2.3	14	94	5	55	19	0	12	67	1.22
11039805--11039843	16	2.4	16	91	0	60	56	7	0	35	1.28
11039913--11039954	16	2.6	16	88	0	57	40	7	4	47	1.52
11040056--11040401	77	4.5	76	77	7	329	31	11	9	46	1.73
11040077--11040401	154	2.1	154	81	6	381	31	11	10	46	1.73
11043671--11043724	14	3.9	14	85	4	74	22	0	31	46	1.52
11043671--11043747	28	2.7	28	84	7	102	23	1	28	46	1.60
11043739--11043773	15	2.4	14	86	9	52	22	0	31	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11054398--11054449	24	2.2	24	89	0	77	36	3	9	50	1.54
11058929--11059884	497	1.9	497	97	0	1822	38	21	9	30	1.85
11065988--11066036	24	2.0	24	88	0	71	38	4	10	46	1.57
11069012--11069062	18	2.9	17	75	18	50	45	3	13	37	1.63
11070264--11070335	36	2.0	36	83	0	90	34	18	11	36	1.86
11073966--11074162	98	2.0	98	96	0	367	36	23	10	29	1.88
11074857--11074892	17	2.1	17	89	0	54	61	2	8	27	1.39
11075495--11075569	19	3.8	19	77	6	87	34	13	10	41	1.79
11075472--11075568	19	4.7	21	73	12	60	38	12	9	40	1.75
11075745--11076090	44	7.9	44	77	10	291	27	23	20	28	1.99
11075735--11075957	89	2.5	89	84	5	283	26	25	19	29	1.98
11075742--11075995	134	1.9	132	86	5	363	27	24	20	28	1.99
11106162--11106427	41	6.5	41	92	1	421	28	19	27	25	1.99
11112856--11112889	17	2.0	17	88	0	50	55	11	14	17	1.68
11114168--11114351	40	4.5	41	92	2	284	27	19	27	25	1.99
11119486--11119528	22	2.0	22	81	9	52	41	4	0	53	1.21
11120050--11120089	18	2.1	20	86	9	57	35	2	7	55	1.42
11136689--11136933	33	7.5	33	79	15	235	19	19	28	32	1.96
11136684--11136870	102	1.8	102	96	0	347	20	19	29	30	1.97
11136884--11137091	76	2.8	75	86	0	281	22	19	24	33	1.97
11140839--11140867	14	2.1	14	100	0	58	17	27	13	41	1.87
11145589--11145620	5	6.4	5	100	0	64	0	18	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11153404--11153446	18	2.3	19	80	15	54	67	6	0	25	1.15
11165785--11165809	4	6.2	4	100	0	50	52	24	0	24	1.48
11167725--11168051	73	4.5	72	76	7	248	36	22	12	29	1.90
11167781--11168056	73	3.8	72	78	7	277	35	22	12	29	1.91
11167774--11168050	147	1.9	147	82	3	351	35	22	12	29	1.91
11172782--11172838	20	2.9	20	76	7	55	59	1	0	38	1.08
11173318--11173369	24	2.2	24	85	0	68	55	7	1	34	1.39
11175287--11175338	24	2.2	24	89	0	77	55	9	1	32	1.43
11191584--11191613	8	3.8	8	100	0	60	50	10	40	0	1.36
11195626--11195681	26	2.2	26	83	0	67	37	1	0	60	1.07
11206279--11206303	13	1.9	13	100	0	50	48	0	8	44	1.32
11220493--11220820	159	2.1	160	98	0	640	31	18	10	39	1.84
11221643--11221710	29	2.3	30	82	5	75	26	22	5	45	1.75
11221935--11221983	19	2.4	21	83	12	59	48	4	14	32	1.62
11224713--11224801	44	2.0	44	100	0	178	26	6	15	50	1.69
11227355--11227388	2	17.0	2	100	0	68	50	0	50	0	1.00
11232059--11232303	90	2.7	90	76	3	215	34	22	15	28	1.94
11236313--11236384	26	2.8	26	83	10	94	38	6	18	36	1.77
11239303--11239355	14	3.8	14	74	0	52	35	22	13	28	1.92
11242542--11242827	42	6.8	42	90	3	434	32	21	22	24	1.98
11242542--11242928	42	9.2	42	84	4	417	31	21	20	26	1.98
11242982--11243015	14	2.4	14	95	0	59	52	20	8	17	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11243239--11243309	21	3.4	21	80	0	79	2	45	18	33	1.64
11248758--11248922	7	19.0	9	65	32	69	33	0	20	45	1.52
11248772--11249189	18	21.6	19	66	24	82	32	0	20	46	1.56
11248803--11249208	26	16.1	26	87	6	579	32	0	20	46	1.56
11248803--11249208	51	8.0	51	88	6	571	32	0	20	46	1.56
11248978--11249204	19	12.5	19	67	23	100	32	0	19	46	1.56
11249245--11249401	73	2.1	73	98	1	305	40	6	1	51	1.35
11249276--11249388	35	3.1	35	67	16	104	38	7	1	52	1.41
11249738--11249815	34	2.3	34	93	0	129	44	14	11	29	1.80
11250368--11251081	261	2.7	261	91	2	1150	32	21	18	27	1.96
11250948--11251182	115	2.0	115	90	3	366	31	19	17	31	1.95
11251620--11251700	14	5.8	13	74	17	58	46	29	1	22	1.59
11251620--11251699	21	3.8	20	70	15	54	47	28	1	22	1.59
11252346--11252712	188	2.0	187	79	9	399	29	28	21	20	1.98
11252696--11252893	72	2.8	70	77	10	206	28	24	20	26	1.99
11253775--11253831	19	3.0	19	77	10	62	68	0	5	26	1.11
11254947--11255019	19	3.5	19	68	20	56	41	36	1	20	1.61
11255396--11255439	21	2.1	20	87	8	61	27	13	4	54	1.58
11255562--11255601	8	4.9	8	90	6	62	30	10	22	37	1.87
11255562--11255600	17	2.4	17	91	4	62	30	10	23	35	1.88
11256080--11256121	22	1.9	22	85	9	59	85	2	4	7	0.80
11259819--11259893	39	1.9	38	81	7	89	33	18	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11259930--11260173	41	5.8	41	81	9	267	18	22	29	29	1.97
11260616--11260700	27	3.1	28	74	19	88	25	0	41	32	1.56
11260587--11260657	34	2.1	34	89	2	108	22	1	45	30	1.61
11262463--11262488	11	2.4	11	100	0	52	15	15	0	69	1.20
11263702--11263744	17	2.5	17	96	3	77	53	4	4	37	1.43
11265479--11266062	114	5.1	114	87	1	832	33	21	21	23	1.97
11265974--11266152	92	1.9	92	91	0	295	32	16	23	27	1.96
11265860--11266244	206	1.9	205	88	1	583	32	18	21	26	1.97
11266066--11266328	113	2.3	114	86	4	372	34	20	19	25	1.96
11266994--11267047	21	2.6	21	82	5	56	25	0	37	37	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213