genome.fa.s14.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  149  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44836130--44836194	32	2.0	32	82	5	78	32	15	13	38	1.87
44836843--44836881	19	2.1	19	85	9	53	58	2	20	17	1.50
44840428--44840490	30	2.1	30	90	0	99	25	1	14	58	1.45
44840573--44840613	18	2.2	20	86	8	59	24	0	9	65	1.22
44840614--44840646	11	2.9	12	86	13	52	66	0	0	33	0.92
44857265--44857442	27	6.6	27	83	3	205	26	15	28	29	1.96
44857266--44857421	82	1.9	81	88	3	233	26	15	28	29	1.96
44857262--44857442	82	2.2	81	83	2	229	27	15	27	29	1.96
44864893--44864934	16	2.6	16	85	7	59	50	0	0	50	1.00
44866384--44866454	3	23.7	3	97	0	133	64	1	33	0	1.02
44867723--44867789	5	13.4	5	83	16	70	77	1	20	0	0.85
44867725--44867778	28	1.9	28	96	0	99	81	1	16	0	0.78
44871109--44871623	31	16.7	31	86	2	644	43	16	8	31	1.78
44883725--44884150	78	5.5	77	84	2	519	17	17	32	33	1.93
44883725--44884150	117	3.6	116	82	3	505	17	17	32	33	1.93
44883726--44884150	39	10.9	38	83	3	454	17	17	32	33	1.93
44889146--44890042	299	3.0	299	87	1	1234	32	17	19	30	1.94
44892019--44892062	23	1.9	23	90	9	72	11	9	38	40	1.73
44892017--44892068	23	2.3	23	80	6	70	13	13	36	36	1.84
44892042--44892329	39	7.4	39	78	1	254	17	18	31	33	1.93
44892042--44892283	117	2.1	117	81	3	281	16	18	31	33	1.93
44893893--44894773	440	2.0	440	95	0	1564	32	14	22	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44897819--44898411	299	2.0	299	89	2	904	32	16	18	32	1.94
44899598--44899884	50	5.8	50	84	6	361	27	21	31	19	1.97
44899602--44899884	100	2.9	99	89	2	410	27	21	31	19	1.97
44906276--44906356	16	5.1	16	96	0	153	37	4	37	20	1.75
44906335--44906425	45	2.0	44	89	6	139	31	5	28	34	1.80
44906581--44907096	66	8.7	54	68	22	263	49	5	3	42	1.41
44906715--44906749	18	2.0	17	88	5	52	54	0	0	45	0.99
44906955--44906989	18	2.0	17	88	5	52	54	0	0	45	0.99
44906581--44907110	120	4.4	120	98	0	1006	49	5	3	42	1.41
44907051--44907333	91	3.0	93	86	6	342	48	3	2	45	1.34
44907092--44907259	47	3.7	46	70	18	152	47	4	2	45	1.35
44907151--44907313	26	5.6	28	69	22	86	49	4	1	44	1.29
44907126--44907333	91	2.3	91	94	0	353	46	4	2	46	1.37
44907151--44907293	44	3.2	43	70	16	128	48	3	1	46	1.27
44907176--44907314	47	3.0	47	69	17	146	50	4	1	43	1.30
44910380--44910405	13	2.0	13	100	0	52	53	7	0	38	1.30
44912213--44912279	30	2.2	30	97	0	125	56	17	14	10	1.66
44925844--44925871	3	9.3	3	100	0	56	0	32	0	67	0.91
44928761--44928820	9	6.9	9	75	11	54	65	1	0	33	1.03
44928761--44928812	16	3.1	17	83	10	63	67	0	0	32	0.91
44928764--44928829	24	2.6	26	80	4	64	66	1	0	31	1.01
44930481--44930558	36	2.2	36	86	4	106	43	0	14	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44930506--44930549	23	1.9	23	90	0	70	40	0	15	43	1.47
44930492--44930547	13	4.5	13	78	13	64	41	0	14	44	1.45
44933766--44933999	27	8.7	27	75	0	137	22	26	17	33	1.96
44933794--44933977	54	3.4	54	76	7	160	22	25	16	34	1.95
44933774--44933922	81	1.8	81	82	2	192	22	26	16	34	1.95
44944155--44944187	13	2.6	13	90	4	50	57	0	3	39	1.14
44946798--44946878	3	26.7	3	92	2	135	0	32	0	67	0.91
44960324--44960386	12	4.5	14	74	20	51	4	15	1	77	1.01
44960316--44960386	10	7.1	9	72	19	52	4	15	1	78	0.97
44960316--44960378	8	7.5	8	73	16	56	3	15	1	79	0.94
44960316--44960395	41	1.9	42	85	7	110	5	13	2	78	1.01
44960316--44960376	31	1.9	32	83	9	81	3	16	1	78	0.96
44960319--44960382	24	2.8	24	79	13	71	4	15	1	78	1.00
44960904--44960940	4	9.2	4	87	0	56	0	29	0	70	0.88
44960892--44960940	12	4.2	12	86	5	55	2	30	0	67	1.02
44963880--44964078	46	4.2	48	88	7	257	35	14	21	28	1.93
44963810--44964078	98	2.7	98	92	0	448	34	14	21	28	1.93
44964042--44964187	37	4.0	37	93	1	242	36	16	21	24	1.94
44965483--44965523	21	2.0	21	90	0	64	24	19	26	29	1.98
44966951--44966978	14	2.0	14	100	0	56	21	7	42	28	1.79
44967390--44967431	21	2.0	20	86	4	57	38	2	23	35	1.68
44967886--44967961	25	3.1	25	82	1	73	22	23	19	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44970179--44970232	21	2.6	21	90	0	81	46	24	16	12	1.82
44972683--44972751	28	2.5	28	77	17	72	39	1	23	36	1.64
44973230--44973310	25	3.3	25	77	5	76	23	22	22	32	1.98
44975190--44975229	3	13.3	3	100	0	80	67	0	0	32	0.91
44978829--44979031	90	2.3	90	81	8	243	38	19	7	33	1.81
44979068--44979122	29	2.0	29	85	7	78	61	0	1	36	1.06
44979136--44979205	19	3.7	19	79	11	81	67	1	4	27	1.18
44979562--44979586	7	3.6	7	100	0	50	28	0	0	72	0.86
44979561--44979593	14	2.3	15	85	15	52	30	0	0	69	0.88
44979601--44979781	92	2.0	90	84	4	238	34	7	22	35	1.83
44979872--44979896	13	1.9	13	100	0	50	64	0	0	36	0.94
44982010--44982068	9	6.4	9	81	11	66	22	10	25	42	1.84
44982016--44982071	19	2.9	19	74	15	62	19	8	25	46	1.79
44983095--44983185	44	2.1	44	87	4	130	27	9	14	48	1.75
44985056--44985249	94	2.1	94	99	0	379	32	12	12	41	1.81
44988906--44988934	6	4.8	6	100	0	58	68	0	31	0	0.89
44992823--44992925	24	4.1	24	75	16	93	63	1	3	31	1.24
44992830--44992926	16	5.8	17	73	19	80	64	1	3	30	1.15
44992832--44992891	7	7.7	7	77	17	57	63	0	3	33	1.11
44992831--44992927	26	3.8	26	69	26	66	63	1	3	31	1.16
44992846--44992928	35	2.4	35	84	9	100	65	1	3	30	1.17
44993002--44993054	3	17.7	3	81	14	65	60	1	1	35	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44993617--44993657	17	2.5	16	81	18	57	80	2	12	4	0.97
44996756--44996804	22	2.3	20	75	6	53	40	8	22	28	1.82
44996970--44997033	20	3.2	20	75	16	60	37	3	15	43	1.63
44998217--44998261	13	3.6	12	80	11	54	73	4	8	13	1.23
44998199--44998245	17	2.8	17	83	0	58	72	4	6	17	1.22
45004964--45005002	18	2.2	17	86	4	51	76	2	0	20	0.90
45004965--45005009	23	1.9	24	86	4	65	75	2	0	22	0.91
45005202--45005320	59	2.0	59	96	0	220	38	9	12	39	1.75
45006252--45006276	11	2.3	11	100	0	50	8	16	0	76	1.02
45010166--45010209	15	2.8	16	79	6	54	68	0	0	31	0.90
45010160--45010236	30	2.5	31	76	6	84	67	3	0	28	1.08
45020336--45020396	6	10.0	6	89	3	77	75	6	0	18	1.01
45021903--45021965	33	1.9	32	84	9	83	73	3	0	23	0.98
45023322--45023370	25	2.0	25	83	0	62	32	6	6	55	1.49
45023418--45023485	25	2.6	27	69	9	68	38	4	2	54	1.36
45030680--45030996	87	3.6	87	91	0	508	28	21	24	24	1.99
45031214--45031511	44	6.9	42	70	12	158	30	19	21	28	1.97
45032177--45032216	20	2.1	19	95	4	71	70	5	20	5	1.26
45032928--45032981	21	2.8	18	74	17	54	27	5	3	62	1.34
45032952--45033000	25	2.0	25	83	0	62	32	6	6	55	1.49
45033048--45033115	25	2.6	27	69	9	68	38	4	2	54	1.36
45035118--45035235	60	2.0	60	89	0	182	37	19	11	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45038170--45038230	18	3.2	20	77	9	65	72	0	4	22	1.04
45038984--45039030	19	2.8	17	78	15	53	42	4	2	51	1.33
45039068--45039104	16	2.3	16	86	13	58	40	0	0	59	0.97
45039090--45039125	18	1.9	18	88	5	54	58	0	0	41	0.98
45039119--45039174	12	4.7	12	79	16	71	53	0	0	46	1.00
45039834--45039881	23	2.1	23	92	0	78	31	25	8	35	1.85
45043237--45043376	42	3.3	42	76	5	140	30	26	19	24	1.98
45044396--45044556	43	3.7	43	89	4	227	30	24	19	25	1.98
45044394--45044593	86	2.3	86	83	6	257	33	25	17	24	1.97
45049342--45049393	7	7.4	7	80	0	59	34	46	0	19	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213