genome.fa.s14.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  188  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56709009--56709056	21	2.3	21	78	7	53	8	12	2	77	1.08
56709654--56709706	3	17.7	3	100	0	106	0	33	0	66	0.92
56713076--56713119	22	2.0	22	91	4	72	29	6	13	50	1.68
56713694--56713723	7	4.3	7	91	0	51	76	10	0	13	1.01
56715355--56715397	18	2.4	19	84	11	63	37	0	2	60	1.10
56716634--56716705	34	2.1	34	82	5	83	36	22	11	30	1.89
56716880--56717068	41	4.6	41	90	0	297	23	28	19	28	1.98
56718058--56718092	4	8.8	4	100	0	70	51	22	0	25	1.48
56722751--56722821	33	2.2	33	82	5	81	46	12	18	22	1.82
56725415--56725452	11	3.5	11	82	13	51	44	2	0	52	1.14
56727742--56727784	18	2.4	18	80	0	50	20	6	4	67	1.33
56735355--56735382	7	4.0	7	100	0	56	85	0	0	14	0.59
56737096--56737121	13	2.0	13	100	0	52	23	23	7	46	1.78
56740503--56740699	42	4.7	42	84	2	234	16	20	15	47	1.82
56740537--56740704	21	8.0	21	72	6	117	16	20	16	46	1.84
56744143--56744212	23	3.3	23	65	19	69	41	10	12	35	1.77
56744136--56744214	41	1.9	41	100	0	158	39	10	15	35	1.81
56748426--56748464	20	2.0	20	95	5	71	51	0	0	48	1.00
56749214--56749251	19	2.1	19	85	5	51	39	0	7	52	1.31
56762301--56762463	63	2.6	63	87	0	218	33	31	7	26	1.85
56763673--56763753	31	2.7	30	81	7	83	37	4	17	40	1.71
56763695--56763753	31	1.9	31	86	6	84	38	6	18	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56765681--56765726	20	2.2	20	85	11	58	39	2	4	54	1.32
56767217--56767285	31	2.2	31	92	0	111	36	14	8	40	1.77
56768137--56768196	30	2.0	31	83	3	77	20	38	0	41	1.52
56778789--56778845	30	1.9	30	85	3	80	42	1	24	31	1.65
56779057--56779083	13	2.1	13	100	0	54	29	0	7	62	1.22
56779183--56779424	50	4.7	50	86	4	297	26	24	29	19	1.99
56779183--56779432	100	2.4	103	88	6	364	26	24	29	20	1.99
56784174--56784242	22	3.1	22	75	8	68	43	18	23	14	1.87
56786196--56786239	22	2.0	23	81	4	54	56	25	11	6	1.58
56788760--56788848	45	2.0	45	95	0	160	40	17	4	37	1.71
56797154--56797447	142	2.1	142	100	0	588	29	15	15	39	1.88
56799543--56799572	14	2.1	14	100	0	60	80	6	6	6	1.04
56800679--56800730	26	2.0	26	96	0	95	51	15	21	11	1.74
56803986--56804084	28	3.6	27	84	9	119	31	12	28	28	1.92
56808080--56808195	41	2.8	40	77	11	128	31	27	21	19	1.98
56808235--56808411	64	2.7	64	84	7	203	41	17	7	33	1.79
56808235--56808393	64	2.4	67	86	7	209	40	17	8	33	1.79
56812872--56812915	21	2.0	22	86	4	63	65	2	0	31	1.05
56814905--56815000	48	2.0	48	91	0	156	34	15	23	26	1.95
56816846--56816999	73	2.1	73	80	2	175	33	23	24	18	1.96
56816896--56817036	25	5.6	25	72	12	103	32	22	24	19	1.97
56816974--56817036	26	2.4	26	78	0	81	36	20	23	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56821947--56821989	19	2.2	20	80	12	54	30	18	2	48	1.60
56823426--56823572	56	2.7	54	83	9	194	23	26	23	26	2.00
56823670--56823700	12	2.5	12	94	5	53	54	12	0	32	1.38
56824844--56824907	21	3.0	22	72	9	69	37	25	18	18	1.94
56824993--56825052	18	3.3	17	80	13	57	33	21	1	43	1.63
56832527--56832620	44	2.1	44	82	11	111	35	5	23	36	1.78
56834808--56834843	16	2.2	16	90	0	54	30	22	5	41	1.76
56835822--56835866	23	2.0	23	86	4	65	48	15	4	31	1.65
56845466--56845503	18	2.1	19	85	5	51	71	0	21	7	1.11
56849717--56849768	5	11.0	5	74	25	51	59	0	0	40	0.97
56849717--56849755	14	3.0	13	89	10	62	56	0	0	43	0.99
56849721--56849766	23	2.0	22	91	4	74	58	0	0	41	0.98
56849789--56849831	22	2.0	22	90	9	70	44	9	13	32	1.76
56852484--56852528	22	2.0	22	100	0	90	35	8	17	37	1.81
56853550--56853592	15	2.9	15	96	0	77	48	23	20	6	1.73
56855111--56855204	47	2.0	47	97	0	179	25	18	23	32	1.97
56857370--56857434	25	2.6	25	80	9	71	38	15	15	30	1.88
56863398--56863445	18	2.7	17	81	9	60	41	4	16	37	1.68
56864500--56864590	25	3.6	25	70	5	69	30	21	26	20	1.98
56866549--56866577	10	2.7	11	89	10	51	17	17	6	58	1.59
56868064--56868092	6	4.8	6	100	0	58	48	0	34	17	1.47
56868999--56869023	13	1.9	13	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56869002--56869058	21	2.5	22	77	13	62	59	0	1	38	1.08
56869002--56869058	11	5.0	11	79	16	55	59	0	1	38	1.08
56878017--56878142	62	2.0	62	93	0	216	19	20	10	50	1.76
56879367--56879416	22	2.3	22	89	0	73	8	24	14	54	1.66
56879407--56879491	39	2.3	37	89	6	127	25	16	20	37	1.93
56880719--56880780	32	1.9	32	96	0	115	38	22	9	29	1.86
56883528--56883582	13	4.2	13	76	0	56	36	25	3	34	1.74
56883984--56884036	9	5.9	9	86	0	79	22	11	26	39	1.88
56883987--56884036	18	2.8	18	93	0	91	24	12	24	40	1.88
56893518--56893564	18	2.4	20	86	10	62	42	2	6	48	1.40
56895953--56896204	126	2.0	127	86	2	355	31	22	15	30	1.94
56897181--56897337	37	4.0	37	82	14	199	26	21	15	36	1.93
56897254--56897620	46	7.6	46	86	7	437	29	22	14	34	1.93
56897297--56897614	52	6.3	52	86	7	417	28	22	13	34	1.93
56897254--56897606	196	1.8	196	92	0	598	28	22	14	34	1.93
56897254--56897620	98	3.7	97	84	9	492	29	22	14	34	1.93
56902911--56902939	14	2.0	15	93	6	51	37	0	0	62	0.96
56903491--56903519	13	2.1	14	93	6	51	89	3	6	0	0.57
56906653--56906742	36	2.5	36	77	10	87	45	3	0	51	1.18
56908888--56908969	23	3.5	23	68	23	71	21	7	23	47	1.75
56908906--56908992	23	3.7	23	71	20	72	22	10	19	47	1.80
56908871--56908994	48	2.6	47	91	3	196	20	9	19	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56909698--56909808	38	2.9	38	84	0	141	34	25	22	18	1.96
56909698--56909769	19	3.8	19	98	0	135	31	25	26	16	1.96
56916547--56916691	68	2.1	71	80	7	163	52	4	2	41	1.32
56916755--56916779	11	2.3	11	100	0	50	36	48	0	16	1.46
56916994--56917033	13	3.1	13	88	0	62	30	17	7	45	1.76
56920813--56920874	29	2.1	29	82	5	72	46	1	1	50	1.20
56934081--56934125	21	2.1	22	91	4	74	66	11	17	4	1.38
56934081--56934149	20	3.4	20	80	6	68	65	11	17	5	1.44
56934234--56934334	25	3.8	26	75	10	98	59	0	22	17	1.38
56934233--56934309	26	3.0	27	81	11	99	61	0	24	14	1.33
56934422--56934476	23	2.3	23	84	9	67	80	0	14	5	0.89
56934440--56934482	20	2.2	20	87	8	61	76	0	13	9	1.01
56936153--56936219	34	2.0	34	100	0	134	28	14	17	38	1.90
56936883--56936939	30	1.9	30	88	0	87	10	29	36	22	1.88
56940187--56940222	3	12.0	3	100	0	72	33	33	0	33	1.58
56942533--56942584	27	1.9	27	96	0	95	21	3	15	59	1.52
56942707--56942737	11	2.8	11	90	0	53	67	0	0	32	0.91
56942707--56942741	11	3.1	11	91	4	52	65	0	0	34	0.93
56946693--56946850	44	3.4	44	88	6	208	29	24	15	30	1.96
56946685--56946843	51	3.3	50	86	9	222	28	24	15	31	1.95
56950764--56950801	18	2.1	18	90	0	58	21	0	21	57	1.40
56950917--56951486	126	4.5	126	87	2	788	31	16	22	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56952416--56952453	20	1.9	20	84	10	51	55	7	2	34	1.43
56953379--56953478	51	2.0	51	80	11	116	46	3	23	28	1.67
56953438--56953514	11	6.9	11	75	19	63	42	1	29	25	1.63
56953438--56953514	22	3.5	22	81	16	88	42	1	29	25	1.63
56953438--56953513	33	2.3	35	81	9	95	42	1	30	26	1.64
56958886--56958919	17	1.9	18	94	5	61	38	11	17	32	1.86
56962371--56962412	18	2.2	20	84	12	54	71	0	4	23	1.05
56962868--56962899	4	8.0	4	100	0	64	50	0	25	25	1.50
56963468--56963541	29	2.6	29	95	0	130	32	27	13	27	1.94
56970642--56970704	30	2.1	30	93	0	108	57	14	3	25	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213