genome.fa.s14.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  106  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30108984--30109022	17	2.3	17	86	8	53	28	2	33	35	1.71
30113345--30113615	81	3.3	81	80	5	228	16	19	19	45	1.86
30115378--30115483	18	5.9	18	78	0	86	17	17	34	29	1.94
30118093--30118225	64	2.1	64	97	0	248	26	16	30	27	1.97
30118982--30119028	24	2.0	24	83	8	60	42	2	10	44	1.51
30120363--30120399	17	2.2	17	95	0	65	62	8	10	18	1.52
30120617--30120676	23	2.8	22	80	9	79	71	3	3	21	1.15
30123227--30123257	16	1.9	16	93	0	53	54	9	3	32	1.49
30123216--30123280	27	2.3	27	86	5	85	53	10	4	30	1.56
30123254--30123290	18	2.1	18	94	0	65	62	8	10	18	1.52
30128827--30128907	39	2.1	39	97	0	153	39	14	7	38	1.75
30129371--30129419	25	2.0	25	83	0	62	46	22	2	28	1.63
30130603--30130645	22	2.0	22	85	0	59	11	16	4	67	1.38
30130694--30130741	24	2.0	24	83	4	60	43	8	2	45	1.45
30131010--30131088	29	2.6	29	78	11	79	27	13	11	46	1.78
30131303--30131351	20	2.5	20	86	6	64	63	6	0	30	1.19
30132076--30132106	7	4.4	7	100	0	62	38	0	0	61	0.96
30133646--30133688	13	3.5	13	75	18	56	48	13	0	37	1.43
30133646--30133697	23	2.3	23	96	0	95	50	13	0	36	1.42
30138080--30138114	17	2.1	17	88	0	52	68	2	8	20	1.29
30138942--30138984	13	3.5	13	75	18	56	48	13	0	37	1.43
30138942--30138993	23	2.3	23	96	0	95	50	13	0	36	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30140744--30140798	25	2.2	25	78	12	60	61	7	9	21	1.50
30141018--30141055	14	2.7	15	84	12	53	26	0	28	44	1.54
30141032--30141086	21	2.6	21	78	18	60	20	0	38	41	1.52
30141071--30141122	22	2.4	21	81	9	59	21	0	44	34	1.52
30141171--30141218	25	1.9	25	95	0	87	35	0	2	62	1.07
30141375--30141411	14	2.6	15	83	12	51	27	2	32	37	1.71
30141406--30141480	21	3.6	21	77	10	73	26	0	38	34	1.57
30141409--30141505	14	6.9	14	67	13	56	25	1	39	34	1.63
30141578--30141627	25	2.0	24	81	11	57	46	8	4	42	1.52
30142373--30142420	19	2.5	19	75	0	51	29	47	2	20	1.61
30146178--30146359	43	4.3	43	82	6	226	25	19	29	25	1.98
30146178--30146359	85	2.1	86	86	5	253	25	19	29	25	1.98
30147340--30147741	144	2.8	144	94	1	700	30	10	21	38	1.87
30149402--30149791	51	7.7	51	83	6	404	29	15	25	29	1.96
30149402--30149793	102	3.9	101	87	3	486	29	15	25	29	1.96
30149406--30149791	153	2.5	151	83	5	456	29	15	25	29	1.96
30152583--30152670	27	3.3	27	91	0	122	35	13	27	23	1.93
30152596--30152685	27	3.3	27	88	0	90	37	14	23	24	1.92
30156522--30156559	11	3.4	11	92	3	58	50	0	7	42	1.31
30159881--30160037	41	3.8	41	87	3	217	19	21	29	29	1.97
30162634--30162667	18	1.9	18	94	5	61	38	5	0	55	1.24
30164039--30164347	43	7.2	42	81	5	325	22	18	33	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30164107--30164348	129	1.9	129	87	0	358	21	20	33	24	1.97
30166066--30166097	16	1.9	16	93	6	55	65	0	0	34	0.93
30168983--30169061	25	3.2	25	84	8	99	32	18	18	29	1.96
30170181--30170430	27	9.3	27	85	3	315	21	16	19	42	1.89
30177128--30177269	27	5.3	27	87	1	187	21	13	19	45	1.84
30181117--30181152	18	2.0	18	100	0	72	38	0	0	61	0.96
30182441--30182502	25	2.5	25	75	0	61	24	27	20	27	1.99
30188659--30188715	25	2.3	25	87	0	87	33	21	19	26	1.97
30193830--30194094	40	6.7	40	85	6	342	25	27	21	25	2.00
30207392--30207576	101	1.8	101	85	8	259	24	16	26	32	1.96
30207389--30207574	51	3.7	49	77	7	178	24	16	26	32	1.96
30213523--30213698	50	3.5	50	77	6	146	31	22	25	20	1.98
30213581--30213705	49	2.5	48	82	6	144	30	22	24	22	1.99
30231579--30231952	44	8.5	44	77	3	225	30	20	22	27	1.98
30231536--30231919	89	4.3	87	78	5	335	28	19	24	27	1.98
30231535--30231952	133	3.2	131	81	4	412	29	20	23	26	1.99
30231582--30231932	131	2.7	132	83	4	397	30	19	23	27	1.98
30236264--30236316	28	2.0	26	85	7	70	26	1	3	67	1.17
30236437--30236485	20	2.5	20	76	6	55	53	2	0	44	1.12
30239151--30239207	21	2.7	21	86	0	78	49	21	8	21	1.76
30240121--30240180	21	2.9	21	80	7	70	35	1	3	60	1.23
30240198--30240237	19	2.1	19	85	0	53	35	2	5	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30242530--30242572	20	2.2	20	92	8	72	53	0	9	37	1.33
30243109--30243162	16	3.4	15	75	10	54	7	48	16	27	1.73
30246088--30246117	14	2.1	14	93	0	51	50	3	0	46	1.18
30246103--30246253	30	5.1	30	77	11	141	32	15	2	49	1.58
30246098--30246271	60	2.9	58	81	10	185	32	15	2	49	1.59
30246093--30246272	29	6.2	28	78	10	159	33	15	2	48	1.59
30246771--30246827	17	3.3	18	76	13	57	77	0	19	3	0.92
30246770--30246828	26	2.3	25	82	5	73	76	0	20	3	0.93
30252423--30252579	30	5.2	30	83	5	165	46	1	17	34	1.59
30252441--30252579	60	2.3	60	87	3	199	48	2	16	33	1.58
30261466--30261585	41	2.9	41	93	0	213	31	16	20	31	1.95
30261553--30261861	138	2.2	138	86	2	433	28	18	21	32	1.96
30261779--30261862	44	1.9	44	87	0	123	27	17	21	33	1.96
30261595--30261913	138	2.3	138	81	4	349	28	18	20	32	1.96
30285200--30285318	59	2.0	59	100	0	238	50	5	3	41	1.41
30285489--30285526	15	2.6	14	91	8	58	13	34	5	47	1.65
30289048--30290208	128	9.1	128	91	0	1784	25	23	19	31	1.98
30291692--30291730	7	5.7	7	90	9	55	12	15	0	71	1.14
30292644--30292721	6	12.7	6	85	5	57	7	10	14	67	1.40
30292676--30292721	12	3.8	12	94	0	74	4	10	15	69	1.32
30292676--30292721	18	2.6	18	92	0	74	4	10	15	69	1.32
30299363--30299388	12	2.2	12	100	0	52	7	15	30	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30299619--30299710	41	2.2	41	88	5	132	22	22	29	25	1.99
30299637--30300253	113	5.4	114	89	4	926	26	21	26	25	2.00
30299637--30300253	229	2.7	224	90	3	943	26	21	26	25	2.00
30300516--30300556	16	2.5	17	92	4	66	21	0	46	31	1.52
30305645--30306064	210	2.0	210	100	0	840	30	15	17	37	1.90
30306938--30307183	43	5.8	42	84	4	287	23	15	27	34	1.95
30306975--30307183	86	2.4	86	88	0	319	22	15	27	34	1.94
30313968--30314014	9	5.2	9	84	0	67	29	10	21	38	1.87
30313968--30314024	18	3.1	18	89	2	87	31	12	19	36	1.89
30314441--30314470	15	1.9	16	93	6	53	23	30	0	46	1.52
30314930--30314957	5	5.6	5	100	0	56	21	17	17	42	1.89
30315045--30315071	5	5.4	5	100	0	54	18	18	18	44	1.87
30317683--30317718	6	6.0	6	93	0	63	86	13	0	0	0.58
30317683--30317728	12	3.8	12	80	8	58	84	13	2	0	0.71
30317683--30317728	18	2.6	17	86	6	65	84	13	2	0	0.71
30318852--30318907	21	2.7	21	83	5	69	32	21	17	28	1.96
30320239--30320375	65	2.1	65	97	0	256	27	39	7	26	1.82
30320957--30320996	21	1.9	21	94	0	71	55	0	5	40	1.22
30333674--30333716	21	2.0	21	91	8	70	60	6	0	32	1.23
30335959--30336155	90	2.2	89	82	4	236	30	22	17	29	1.97
30337610--30337657	21	2.3	21	85	0	60	16	8	12	62	1.53
30337619--30337659	21	2.0	21	95	0	73	14	7	12	65	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30342380--30342417	20	1.9	20	88	0	58	42	26	5	26	1.76
30346042--30346083	21	2.0	21	100	0	84	28	14	9	47	1.75
30356719--30357663	85	11.0	86	69	12	343	33	20	20	25	1.97
30356720--30357100	44	9.0	43	70	10	183	34	20	20	24	1.97
30356676--30357663	129	7.7	129	73	7	598	33	20	20	25	1.97
30356766--30357263	214	2.3	213	86	1	674	33	20	20	26	1.97
30357195--30357663	44	10.8	44	72	9	318	33	20	21	24	1.97
30357025--30357353	173	1.9	170	81	3	399	33	20	20	25	1.97
30357024--30357661	303	2.1	302	91	0	1017	33	20	20	25	1.97
30357331--30357653	173	1.9	171	85	2	450	31	21	22	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213