genome.fa.s14.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  178  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53822511--53822582	37	1.9	38	83	10	96	29	0	5	65	1.15
53822482--53822581	8	11.2	9	67	21	59	31	1	5	63	1.23
53823707--53823743	9	4.1	9	92	0	65	45	13	10	29	1.77
53823781--53823821	21	2.0	21	85	9	57	19	34	0	46	1.50
53823963--53824022	30	2.0	31	90	3	95	20	41	0	38	1.52
53826097--53826192	41	2.3	41	80	3	95	19	18	26	35	1.95
53830800--53830849	26	2.0	25	84	4	64	32	10	2	56	1.44
53830785--53830838	22	2.5	22	75	0	63	38	7	1	51	1.41
53836004--53836038	18	1.9	18	94	0	61	77	0	22	0	0.78
53836004--53836045	20	2.2	18	87	8	57	73	0	26	0	0.83
53836828--53836861	15	2.3	15	95	5	61	82	0	5	11	0.83
53838277--53839501	132	9.3	132	93	0	2029	31	19	23	26	1.98
53838281--53839281	44	22.8	44	64	15	255	31	18	23	26	1.98
53839249--53839653	220	1.8	219	97	0	585	32	19	21	25	1.97
53839384--53839576	88	2.2	88	92	0	323	32	21	22	23	1.98
53840358--53840396	20	1.9	20	89	5	60	7	17	0	74	1.05
53840574--53840601	14	2.0	14	100	0	56	35	7	42	14	1.73
53841297--53841353	22	2.6	22	77	0	69	38	7	1	52	1.39
53841315--53841364	26	2.0	25	84	4	64	32	10	2	56	1.44
53843283--53843336	19	2.8	19	100	0	108	22	37	31	9	1.86
53848647--53848686	20	2.0	20	85	0	53	30	2	20	47	1.63
53849232--53849269	20	1.9	20	84	10	51	65	21	13	0	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53850792--53850848	19	2.8	20	76	20	55	42	15	1	40	1.58
53852335--53852388	16	3.4	16	86	0	72	37	5	29	27	1.80
53852909--53852951	22	1.9	23	85	4	61	55	9	0	34	1.32
53852622--53853297	119	5.7	119	96	1	1196	51	4	1	42	1.29
53852961--53852996	17	2.1	17	100	0	72	58	0	0	41	0.98
53852979--53853160	37	4.8	35	69	17	121	49	5	1	43	1.33
53853035--53853227	26	6.6	30	67	20	106	53	3	0	41	1.22
53853052--53853090	13	3.1	12	79	13	51	58	0	0	41	0.98
53852622--53853297	236	2.8	237	95	1	1192	51	4	1	42	1.29
53853169--53853209	13	3.2	12	80	12	55	58	0	0	41	0.98
53853199--53853245	18	2.7	18	90	3	69	57	0	0	42	0.98
53852622--53853297	355	1.9	357	95	1	1214	51	4	1	42	1.29
53853367--53853436	19	3.8	19	69	16	67	47	8	2	41	1.49
53854679--53854783	49	2.1	50	91	1	167	51	10	6	31	1.62
53857130--53857163	16	2.1	16	100	0	68	76	0	0	23	0.79
53858295--53858335	21	2.0	21	100	0	82	53	21	4	19	1.63
53859292--53859332	17	2.3	18	91	8	66	60	4	26	7	1.43
53859707--53859899	51	3.8	49	81	3	215	31	27	17	23	1.96
53859714--53859898	101	1.8	102	88	3	284	32	27	16	23	1.96
53869349--53869420	25	2.9	25	89	0	99	33	16	30	19	1.94
53875064--53875430	103	3.6	103	89	2	524	31	29	20	18	1.96
53875757--53875821	30	2.2	29	81	8	76	30	26	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53875764--53875821	30	1.9	30	85	0	80	31	22	6	39	1.80
53879715--53879785	25	2.8	25	84	0	88	35	18	29	16	1.93
53879626--53879767	75	1.9	75	82	2	178	33	21	25	19	1.97
53903363--53903422	19	3.1	19	69	11	50	33	8	11	46	1.70
53907565--53907597	17	1.9	17	93	0	57	39	3	0	57	1.14
53907567--53907605	17	2.4	17	86	4	53	43	2	0	53	1.14
53908305--53908412	6	18.7	6	85	9	55	63	0	36	0	0.94
53908330--53908413	3	28.0	3	81	9	100	65	0	34	0	0.93
53908691--53909542	315	2.7	317	92	3	1405	54	8	7	28	1.58
53908690--53909545	158	5.4	159	91	4	1354	54	8	7	28	1.58
53914773--53914914	76	1.9	76	88	2	214	51	12	5	30	1.63
53915128--53915191	33	1.9	34	83	3	85	4	25	0	70	1.06
53915139--53915193	15	3.8	15	73	9	51	1	27	0	70	0.97
53915239--53915289	20	2.5	20	100	0	102	0	35	0	64	0.94
53915330--53915394	27	2.4	27	89	0	94	7	35	30	26	1.84
53916683--53916743	13	4.7	13	78	13	63	39	16	1	42	1.58
53916766--53916799	13	2.6	13	90	0	50	26	26	8	38	1.85
53920671--53920841	68	2.5	70	81	6	197	35	18	5	40	1.74
53921286--53921316	15	2.0	16	93	6	55	45	6	0	48	1.28
53921578--53921623	20	2.2	22	88	7	69	21	6	4	67	1.32
53921699--53921775	9	8.2	9	78	7	64	58	0	1	40	1.06
53921696--53921782	10	9.0	10	79	13	67	59	0	1	39	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53921703--53921753	19	2.7	19	84	0	57	68	0	1	29	1.00
53921722--53921782	19	3.2	19	77	13	54	60	0	1	37	1.07
53923463--53923492	6	4.8	6	95	4	51	70	16	13	0	1.18
53924912--53931780	370	18.1	370	74	10	4617	50	15	17	16	1.79
53927602--53927799	96	2.1	96	86	5	276	47	20	11	21	1.80
53928237--53928279	15	2.8	15	83	13	52	72	6	11	9	1.29
53928237--53928284	16	3.1	16	80	14	55	68	8	12	10	1.39
53929716--53929755	17	2.5	15	84	15	53	72	5	20	2	1.15
53929710--53929752	21	2.0	22	86	13	63	69	4	18	6	1.29
53924912--53931784	743	9.1	744	76	10	5535	50	15	17	16	1.79
53927698--53931784	371	10.9	373	78	8	3628	50	14	17	16	1.78
53930458--53930497	17	2.5	15	84	15	53	72	0	20	7	1.08
53930452--53930494	21	2.0	22	86	13	63	69	0	18	11	1.17
53930877--53930910	17	2.1	15	89	10	50	73	5	17	2	1.16
53930871--53930921	21	2.4	21	84	15	70	72	3	17	5	1.20
53931728--53931841	57	2.0	57	96	0	210	44	16	14	23	1.85
53932054--53932086	16	2.2	15	89	10	50	78	9	12	0	0.95
53931789--53932551	375	2.0	371	82	2	893	49	14	17	17	1.79
53930984--53932553	803	2.0	802	85	3	2120	50	14	18	17	1.79
53933340--53933374	17	2.1	17	94	0	61	25	11	17	45	1.81
53936926--53937036	41	2.7	41	97	1	204	25	21	30	22	1.99
53943976--53944127	41	3.7	41	94	0	259	26	21	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53945209--53945248	18	2.2	18	90	0	62	40	0	25	35	1.56
53952994--53953245	129	2.0	129	93	1	434	32	20	17	30	1.95
53954506--53954560	18	3.1	18	80	12	60	16	9	0	74	1.06
53954504--53954553	26	1.9	26	87	0	73	16	10	0	74	1.08
53959394--53959455	17	3.5	17	82	8	63	41	1	0	56	1.09
53959394--53959462	11	5.9	11	71	18	50	43	1	0	55	1.08
53959408--53959471	29	2.2	29	86	2	85	39	3	1	56	1.25
53959394--53959462	6	11.7	6	73	14	54	43	1	0	55	1.08
53959394--53959450	24	2.3	26	82	14	77	40	1	0	57	1.09
53966468--53966616	42	3.6	42	82	2	149	26	26	20	26	1.99
53966486--53966618	42	3.2	42	83	3	162	28	27	18	25	1.98
53968199--53968228	15	1.9	16	93	6	53	60	10	6	23	1.52
53974416--53974481	30	2.2	30	86	0	87	24	21	33	21	1.97
53977844--53977868	13	1.9	13	100	0	50	24	0	16	60	1.36
53985725--53986015	50	5.7	50	81	5	275	23	28	21	26	1.99
53985727--53986020	100	2.9	100	81	5	306	23	28	21	26	1.99
53986246--53986289	17	2.6	17	96	0	79	11	27	6	54	1.61
53986374--53986431	30	1.9	30	82	6	73	32	24	6	36	1.82
53988398--53988447	9	5.6	9	87	0	64	48	24	4	24	1.68
53988554--53988597	18	2.4	18	80	0	52	15	2	40	40	1.60
54002131--54002174	23	1.9	23	81	9	54	43	2	6	47	1.42
54003754--54003803	19	2.5	20	75	12	50	42	14	2	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54010957--54011147	92	2.1	92	91	0	310	29	23	14	31	1.94
54019937--54019965	15	1.9	15	100	0	58	27	27	13	31	1.94
54022705--54022856	73	2.1	73	97	0	286	36	18	11	33	1.87
54026457--54026505	20	2.5	20	100	0	98	10	32	30	26	1.89
54038084--54038174	19	4.8	18	74	15	67	58	0	3	38	1.15
54038095--54038170	40	1.9	40	86	5	109	59	0	2	38	1.12
54038106--54038149	21	2.0	23	86	8	65	61	0	2	36	1.09
54038129--54038205	8	9.1	8	68	20	50	64	0	3	31	1.11
54041858--54041992	40	3.4	39	78	6	137	35	22	22	19	1.96
54042015--54042131	41	2.9	41	96	0	216	17	22	32	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213