genome.fa.s14.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  144  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43149945--43149982	19	2.0	19	89	0	58	52	0	2	44	1.14
43151248--43151392	28	5.3	27	80	4	130	29	26	11	32	1.92
43157445--43157566	57	2.1	58	80	1	129	33	22	13	30	1.93
43158558--43158591	17	2.0	17	88	11	52	26	17	11	44	1.83
43162118--43162222	53	2.0	53	83	3	131	37	19	22	20	1.95
43176590--43176832	29	8.5	29	82	6	268	34	23	16	25	1.95
43176798--43176850	26	2.0	26	88	0	79	41	20	13	24	1.88
43184081--43184122	21	2.0	21	95	0	75	21	33	26	19	1.97
43186108--43186146	20	1.9	21	85	15	55	51	17	0	30	1.46
43193304--43193354	19	2.8	17	81	18	59	43	1	11	43	1.52
43194425--43194564	19	7.4	19	78	4	95	21	22	25	30	1.99
43194425--43194564	38	3.7	38	71	4	113	21	22	25	30	1.99
43199905--43200090	29	6.4	29	77	9	150	27	16	24	31	1.96
43199905--43200038	59	2.3	58	79	8	146	26	14	23	34	1.94
43202457--43202607	39	3.9	39	90	0	203	27	18	28	25	1.98
43224902--43224977	31	2.5	31	86	0	116	21	36	26	15	1.93
43234274--43234359	26	3.3	26	81	0	109	22	25	25	26	2.00
43235584--43235632	23	2.2	21	79	17	55	28	0	24	46	1.53
43242486--43242568	43	2.0	42	87	2	121	30	25	14	30	1.95
43243771--43243822	22	2.4	22	80	6	61	21	15	28	34	1.94
43250575--43250646	29	2.5	29	86	4	92	27	31	13	26	1.94
43273864--43274088	40	5.7	40	85	5	287	24	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43281776--43282040	40	6.7	40	86	4	322	23	21	27	27	1.99
43281776--43282073	119	2.5	118	80	6	307	24	20	27	26	1.99
43285326--43285359	6	5.5	6	89	3	50	17	23	0	58	1.38
43288804--43288840	9	4.1	9	89	0	56	54	18	2	24	1.57
43295558--43295661	18	5.6	17	73	13	73	8	22	1	67	1.28
43295631--43295671	18	2.3	18	87	8	57	9	17	2	70	1.25
43314856--43314907	26	2.0	26	85	7	70	40	17	7	34	1.78
43318138--43318407	50	5.4	50	88	1	373	20	30	22	27	1.98
43318744--43318800	30	1.9	30	85	0	78	33	24	1	40	1.66
43318839--43318880	19	2.2	19	100	0	84	28	14	14	42	1.84
43333633--43333761	64	2.0	64	98	0	249	44	8	10	36	1.70
43336078--43336136	19	3.2	18	80	7	64	64	0	1	33	1.04
43336087--43336205	36	3.1	36	73	23	107	63	1	1	32	1.14
43336094--43336182	44	2.1	43	85	8	119	61	1	2	34	1.15
43336407--43336507	9	10.8	9	72	17	57	32	2	0	64	1.09
43336433--43336501	20	3.5	19	75	11	68	36	2	0	60	1.11
43336600--43336794	86	2.3	84	81	6	221	30	8	17	43	1.79
43337352--43337376	12	2.1	12	100	0	50	60	24	0	16	1.36
43346739--43347366	50	12.8	49	84	6	731	26	19	33	20	1.97
43346743--43347366	97	6.4	99	80	8	729	26	19	33	20	1.97
43346739--43347366	147	4.3	146	88	2	884	26	19	33	20	1.97
43352510--43352673	35	4.6	36	79	1	179	40	32	13	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43355601--43355644	22	1.9	24	90	9	74	25	20	0	54	1.45
43356232--43356385	5	31.2	5	89	7	190	55	0	0	44	1.04
43362320--43362378	27	2.2	28	79	14	70	49	28	0	22	1.50
43363307--43363353	22	2.1	22	81	14	53	0	21	8	70	1.14
43363546--43363620	5	15.4	5	81	15	95	57	0	0	42	0.98
43363554--43363620	29	2.3	30	84	7	93	58	0	0	41	0.98
43365892--43365923	13	2.4	14	94	5	57	18	6	37	37	1.76
43365907--43365956	21	2.4	20	80	9	55	20	4	40	36	1.71
43376671--43376707	18	2.1	18	94	0	65	24	35	10	29	1.89
43377909--43377966	30	1.9	30	85	0	80	20	36	29	13	1.91
43382800--43382846	10	4.8	10	77	15	53	25	2	2	70	1.10
43384595--43384642	6	8.8	5	86	13	60	16	0	4	79	0.89
43387318--43387347	13	2.2	14	94	5	53	43	0	13	43	1.43
43391599--43391632	16	2.2	16	89	5	52	50	14	8	26	1.72
43391938--43391962	13	1.9	13	100	0	50	64	8	0	28	1.22
43391942--43391974	17	1.9	17	100	0	66	66	6	0	27	1.15
43398896--43398940	22	2.1	22	83	4	56	57	4	2	35	1.31
43401998--43402039	21	2.0	20	82	13	50	19	7	50	23	1.72
43402430--43402475	17	2.8	17	80	9	51	56	4	0	39	1.19
43409145--43409190	21	2.1	22	84	4	58	56	2	2	39	1.24
43414499--43414538	20	1.9	20	85	10	53	20	22	27	30	1.98
43423418--43423490	32	2.5	27	78	19	92	26	2	19	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43423431--43423491	32	1.9	32	96	0	113	27	3	18	50	1.62
43424856--43424894	14	2.8	15	88	11	57	35	17	5	41	1.72
43424856--43424906	14	3.7	14	82	7	52	35	13	9	41	1.78
43431357--43431407	26	2.0	26	88	3	77	25	25	7	41	1.82
43445905--43445975	35	2.0	35	91	5	117	19	15	8	56	1.65
43449435--43449466	5	6.4	5	100	0	64	21	0	37	40	1.54
43455707--43455761	27	2.0	27	100	0	110	36	10	7	45	1.67
43458850--43458898	24	2.0	24	100	0	98	26	8	20	44	1.79
43459249--43459289	14	2.9	14	96	0	73	12	0	7	80	0.90
43464043--43464135	29	3.3	27	75	11	89	55	1	11	31	1.43
43464347--43464407	31	2.0	31	87	12	90	59	0	1	39	1.08
43464347--43464529	40	4.5	40	90	4	278	60	0	3	36	1.13
43464347--43464529	81	2.2	80	90	2	285	60	0	3	36	1.13
43464944--43464991	22	2.2	22	85	3	62	58	6	6	29	1.47
43469390--43469418	15	1.9	15	100	0	58	41	6	17	34	1.76
43474254--43474280	13	2.1	13	100	0	54	22	7	22	48	1.75
43477567--43477662	48	2.0	48	100	0	192	45	10	22	20	1.81
43478751--43478780	2	15.0	2	100	0	60	50	0	50	0	1.00
43480974--43481008	14	2.5	14	90	0	52	42	5	17	34	1.73
43480995--43481040	19	2.3	20	88	7	76	28	10	15	45	1.79
43481116--43481158	18	2.4	18	96	0	77	46	2	0	51	1.13
43484276--43484316	21	2.1	19	86	9	55	53	0	2	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43486764--43486812	17	2.7	18	76	20	57	36	16	0	46	1.47
43491730--43491846	60	2.0	60	88	6	175	46	8	5	40	1.57
43501218--43501565	124	2.8	125	91	0	581	30	15	21	33	1.94
43502280--43502304	10	2.5	10	100	0	50	48	0	8	44	1.32
43502288--43502413	55	2.3	55	100	0	252	45	4	11	38	1.62
43502439--43502666	30	7.7	29	88	8	311	27	1	26	44	1.62
43502439--43502666	59	3.8	59	89	8	372	27	1	26	44	1.62
43502426--43502666	89	2.7	88	93	3	412	26	1	27	44	1.62
43502669--43502850	68	2.6	70	92	3	296	45	14	3	36	1.61
43503252--43503286	18	1.9	18	88	0	52	31	8	34	25	1.86
43503938--43503962	7	3.6	7	100	0	50	60	12	0	28	1.32
43505044--43505111	29	2.4	29	90	2	102	67	0	0	32	0.91
43505131--43505213	29	3.1	29	62	22	72	42	0	28	28	1.56
43505109--43505213	51	2.1	51	96	0	192	42	0	28	28	1.56
43505529--43505576	21	2.3	20	76	16	53	43	4	2	50	1.33
43511137--43511510	185	2.0	185	98	0	730	47	12	20	20	1.82
43518174--43518218	21	2.1	23	88	12	69	68	8	8	13	1.38
43521025--43521288	35	7.8	34	84	6	306	40	17	22	19	1.91
43521015--43521288	67	4.0	67	85	6	329	41	16	21	19	1.90
43521025--43521288	102	2.6	102	89	1	390	40	17	22	19	1.91
43521504--43521576	29	2.5	29	70	16	69	38	10	5	45	1.63
43521542--43521577	14	2.7	13	87	8	54	36	13	5	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43521941--43521984	7	6.3	7	84	10	63	45	15	0	38	1.47
43521940--43521983	22	2.0	22	91	8	72	45	18	0	36	1.49
43521941--43521996	29	2.0	28	89	3	85	44	17	3	33	1.66
43523329--43523361	15	2.1	16	88	5	50	51	6	6	36	1.51
43525052--43525137	43	2.0	43	95	0	154	30	13	13	41	1.84
43525884--43525988	39	2.7	39	82	1	122	36	4	8	50	1.54
43530499--43530548	26	1.9	26	88	8	75	74	0	4	22	0.99
43531426--43531477	23	2.3	23	89	0	77	50	13	0	36	1.42
43535874--43536058	27	6.9	27	85	2	210	20	17	21	41	1.90
43535877--43536058	81	2.2	81	82	1	240	19	17	20	42	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213