genome.fa.s14.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  130  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38025314--38025388	36	2.1	36	97	0	141	25	20	26	28	1.99
38026977--38027020	18	2.4	18	82	14	63	11	6	34	47	1.66
38029887--38029930	21	2.0	22	86	4	63	11	9	25	54	1.65
38031576--38031631	22	2.5	22	91	0	85	26	33	16	23	1.95
38036732--38036893	80	2.0	80	97	0	306	30	16	17	35	1.92
38037480--38037574	45	2.1	45	100	0	190	32	26	10	30	1.90
38040489--38040515	14	1.9	14	100	0	54	37	14	0	48	1.45
38045177--38045226	25	2.0	26	88	4	75	12	10	10	68	1.41
38053599--38053791	40	4.8	39	84	4	260	26	28	21	23	1.99
38053599--38053791	80	2.4	80	93	0	341	26	28	21	23	1.99
38056190--38056231	22	2.0	22	86	9	61	59	4	2	33	1.31
38056166--38056231	22	3.1	20	78	8	60	57	6	1	34	1.33
38057897--38058872	44	22.2	44	61	6	159	26	24	19	29	1.98
38057847--38059450	132	12.2	132	93	0	2688	25	24	19	30	1.98
38071648--38071712	24	2.7	23	75	17	62	64	3	1	30	1.18
38074250--38074295	20	2.3	19	82	10	56	45	2	4	47	1.34
38074320--38074356	18	2.1	18	90	10	58	62	2	0	35	1.10
38079100--38079143	3	14.7	3	100	0	88	0	31	0	68	0.90
38094637--38094725	36	2.5	36	94	0	151	37	38	5	19	1.75
38095165--38095227	29	2.2	29	91	0	99	19	30	26	23	1.98
38095993--38096021	15	1.9	15	100	0	58	44	13	0	41	1.44
38099096--38099122	11	2.5	11	100	0	54	44	18	11	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38099811--38099855	20	2.4	18	82	13	56	42	11	13	33	1.79
38100732--38101519	37	21.5	37	77	6	587	37	14	22	26	1.92
38100756--38101438	75	9.3	73	76	7	525	37	14	21	26	1.92
38100733--38101519	112	7.2	108	78	6	608	37	14	21	26	1.92
38101701--38101853	75	2.0	75	91	0	243	41	19	11	26	1.86
38105989--38106051	8	7.4	8	73	19	56	61	6	1	30	1.30
38106093--38106136	21	2.0	22	86	4	63	52	0	4	43	1.22
38109975--38110087	44	2.6	44	94	0	190	23	30	12	32	1.92
38111715--38112083	43	8.6	43	76	11	312	33	23	16	27	1.96
38111711--38112083	86	4.4	85	76	10	357	33	23	16	27	1.95
38111715--38112099	129	3.0	129	94	1	657	32	23	15	27	1.95
38115680--38116020	43	8.0	42	77	7	328	32	24	15	27	1.96
38115654--38116025	129	2.9	129	91	0	593	32	23	16	27	1.96
38119387--38119427	22	1.9	21	85	5	55	56	7	2	34	1.40
38119464--38119543	39	2.1	39	100	0	160	35	10	5	50	1.58
38119614--38119638	10	2.5	10	100	0	50	64	16	8	12	1.49
38120408--38121336	141	6.9	127	78	10	674	32	22	18	26	1.97
38120787--38121363	141	4.1	140	87	1	798	31	23	18	26	1.97
38124043--38124139	49	2.0	49	93	0	167	25	24	5	44	1.74
38125403--38125488	43	2.0	43	90	4	138	24	23	2	50	1.61
38128050--38128079	11	2.7	11	94	0	51	33	23	0	43	1.54
38128847--38128888	20	2.1	20	86	0	57	28	7	16	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38138961--38138998	3	12.7	3	100	0	76	31	0	0	68	0.90
38149031--38149158	68	1.9	69	86	4	188	31	12	20	35	1.90
38152619--38152865	50	4.8	50	82	7	250	28	21	27	22	1.99
38159969--38160022	21	2.6	21	74	11	56	48	14	33	3	1.62
38167206--38167240	18	1.9	18	88	0	52	42	2	48	5	1.41
38168631--38168683	21	2.5	21	90	3	79	33	33	1	30	1.69
38175612--38177208	796	2.0	796	99	0	3167	35	24	15	24	1.94
38180092--38180154	18	3.5	18	80	0	63	47	26	6	19	1.73
38182520--38182566	18	2.4	20	86	10	62	29	0	4	65	1.11
38183727--38183772	22	2.1	22	91	0	74	65	6	4	23	1.35
38186977--38187016	3	13.3	3	100	0	80	67	0	0	32	0.91
38188796--38188849	13	3.9	13	75	13	54	59	14	7	18	1.58
38188794--38188852	29	2.0	29	100	0	118	59	13	6	20	1.57
38201765--38201798	17	1.9	18	88	5	52	61	0	38	0	0.96
38201906--38201938	17	1.9	17	100	0	66	24	12	6	57	1.57
38215500--38215841	47	7.3	47	89	4	514	32	8	29	29	1.87
38215601--38215672	22	3.3	22	63	18	60	29	11	29	30	1.91
38215490--38215841	139	2.5	137	90	3	517	32	8	29	29	1.87
38232393--38232499	50	2.1	51	87	5	164	24	22	33	19	1.97
38239769--38239901	50	2.7	50	81	6	153	27	22	28	21	1.99
38240165--38240203	20	2.0	20	90	10	62	56	5	23	15	1.59
38246378--38246462	44	2.0	43	97	2	161	14	24	4	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38246565--38246622	22	2.7	21	76	10	53	41	15	5	37	1.70
38247170--38247929	132	5.8	132	92	1	1240	27	23	19	29	1.98
38247170--38247934	262	2.9	263	91	1	1257	27	23	19	29	1.98
38247995--38248139	44	3.3	44	73	5	148	18	23	32	25	1.97
38248022--38248151	43	2.9	46	71	6	140	19	23	27	29	1.98
38247973--38248121	43	3.4	43	71	5	145	18	26	27	27	1.98
38247973--38248151	89	2.0	89	93	0	304	19	25	27	27	1.99
38249371--38249399	14	2.0	15	93	6	51	0	10	6	82	0.83
38254980--38255113	19	6.7	21	78	10	77	40	14	6	38	1.72
38254980--38255037	22	2.6	22	81	7	64	41	17	5	36	1.72
38255016--38255126	19	5.8	19	89	0	177	37	13	9	39	1.76
38255016--38255119	38	2.7	38	98	0	199	38	12	8	40	1.74
38258678--38259061	41	9.4	41	83	4	359	35	14	26	23	1.93
38258671--38259029	82	4.4	82	82	4	395	35	15	26	22	1.94
38258841--38258904	21	3.1	21	65	4	58	29	12	32	25	1.92
38258678--38259107	123	3.5	122	80	5	413	35	14	26	23	1.93
38266086--38266117	16	2.0	16	93	0	55	25	15	0	59	1.36
38266345--38266531	51	3.7	48	77	9	187	31	26	17	24	1.97
38266343--38266527	101	1.8	102	89	3	293	31	25	17	24	1.97
38266339--38266527	102	1.9	102	87	3	274	31	25	17	24	1.97
38269135--38269176	21	2.0	21	95	0	75	26	23	26	23	2.00
38270287--38270326	12	3.3	12	100	0	80	40	22	0	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38278518--38278551	9	3.8	9	100	0	68	23	11	0	64	1.26
38284509--38284607	50	2.0	50	83	0	126	34	14	23	28	1.93
38284717--38284788	27	2.6	27	82	8	83	30	15	26	27	1.96
38284941--38285001	27	2.3	27	85	5	79	45	9	16	27	1.79
38284957--38285043	27	3.2	27	88	0	120	42	14	18	24	1.88
38287599--38287647	21	2.2	23	85	7	66	32	14	22	30	1.93
38287701--38287976	37	7.5	37	72	8	177	28	23	25	22	1.99
38287726--38287976	111	2.3	111	83	3	292	27	23	25	23	2.00
38287850--38288046	74	2.7	73	80	3	223	28	22	24	24	1.99
38289507--38289546	21	1.9	21	89	0	62	40	0	17	42	1.49
38289506--38289557	21	2.5	21	81	6	61	38	0	15	46	1.46
38289870--38289933	25	2.6	24	75	4	65	15	28	18	37	1.92
38289870--38289946	24	3.2	24	73	14	68	15	29	20	33	1.94
38290009--38290065	26	2.2	26	90	3	89	14	24	24	36	1.92
38290085--38290175	25	3.7	24	73	5	74	20	24	19	35	1.96
38301420--38301456	17	2.2	17	95	0	65	24	5	32	37	1.78
38305596--38306137	275	1.9	281	82	6	676	46	5	5	42	1.52
38306101--38306160	19	3.1	20	81	11	63	58	1	3	36	1.25
38311842--38311873	13	2.5	13	95	5	57	84	0	0	15	0.63
38311842--38311873	6	5.2	6	92	7	55	84	0	0	15	0.63
38314754--38314815	32	1.9	32	96	0	115	51	6	9	32	1.60
38320147--38320279	45	3.0	44	77	2	131	41	15	19	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38323129--38323327	67	3.0	67	80	4	213	34	19	22	23	1.97
38323129--38323324	68	2.9	68	79	5	182	34	19	21	23	1.96
38332598--38332633	6	5.7	6	93	6	54	66	13	0	19	1.24
38332626--38332701	24	3.1	24	69	17	66	72	5	14	7	1.25
38332689--38332713	7	3.6	7	100	0	50	72	0	28	0	0.86
38334730--38334942	44	4.8	44	93	0	354	32	23	23	20	1.98
38334730--38334997	132	2.0	132	82	4	317	32	22	24	20	1.97
38334929--38335304	129	2.9	128	92	2	614	31	20	24	23	1.98
38335315--38335627	44	7.2	44	70	8	138	28	19	26	26	1.99
38335290--38335941	217	2.9	216	85	6	790	30	19	22	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213