genome.fa.s14.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  128  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37277244--37277428	79	2.3	82	82	7	220	25	22	27	25	2.00
37277244--37277435	40	4.8	40	81	6	203	26	21	27	25	2.00
37277297--37277461	79	2.1	79	82	6	192	27	20	26	25	1.99
37284206--37284284	37	2.1	37	88	4	115	25	30	18	25	1.98
37284403--37284939	47	11.4	47	94	1	923	29	29	8	32	1.87
37284572--37284646	22	3.3	22	63	7	60	28	30	10	30	1.90
37288768--37288977	40	5.3	40	92	0	314	23	20	29	26	1.99
37294380--37294541	47	3.5	44	74	12	148	48	3	6	41	1.45
37294563--37294603	21	2.0	21	85	0	55	51	2	9	36	1.48
37296054--37296289	115	2.1	115	84	3	305	21	22	20	35	1.96
37296381--37296820	225	2.0	225	91	0	711	29	19	16	34	1.94
37296377--37296720	44	7.7	44	70	11	155	28	20	16	34	1.95
37298305--37298488	79	2.3	80	87	6	268	25	27	22	24	2.00
37298305--37298488	39	4.7	40	91	4	268	25	27	22	24	2.00
37306172--37306394	39	5.7	40	92	3	339	24	27	22	25	2.00
37308041--37308288	44	5.6	44	78	7	259	24	21	25	28	1.99
37308001--37308302	89	3.4	89	88	0	417	25	20	23	30	1.99
37313367--37313579	72	3.0	71	85	6	297	35	18	17	28	1.94
37313366--37313578	70	3.0	71	85	6	281	35	18	17	28	1.93
37314152--37314192	21	2.0	21	85	0	55	51	2	9	36	1.48
37323311--37324039	27	27.3	26	80	6	719	42	21	17	19	1.90
37323311--37324039	53	13.6	53	80	6	724	42	21	17	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37323311--37324039	80	9.1	79	80	6	729	42	21	17	19	1.90
37323311--37324039	107	6.8	106	79	6	643	42	21	17	19	1.90
37326189--37326229	18	2.3	18	86	0	55	17	14	0	68	1.22
37328571--37328649	31	2.6	30	78	7	88	37	17	18	25	1.93
37328571--37328640	30	2.3	30	82	7	88	37	17	20	25	1.94
37330570--37331015	27	16.8	27	81	5	394	41	20	17	21	1.91
37330874--37330919	22	2.1	22	91	0	74	45	13	19	21	1.84
37330830--37330969	75	1.9	76	82	10	180	44	17	18	20	1.87
37330804--37330999	102	1.9	104	84	6	265	43	18	17	20	1.88
37346743--37346829	42	2.1	42	100	0	174	16	16	9	58	1.62
37353463--37353640	27	6.6	27	84	3	205	29	28	15	26	1.96
37353484--37353639	82	1.9	81	88	3	233	29	28	15	26	1.96
37353463--37353652	82	2.3	83	78	12	221	30	27	14	27	1.95
37358138--37358360	40	5.6	40	86	3	236	24	21	27	26	1.99
37358213--37358395	79	2.3	80	82	1	226	25	20	27	25	1.99
37363507--37363730	40	5.6	40	86	3	238	25	20	27	26	1.99
37363583--37363765	79	2.3	80	82	1	226	25	20	27	25	1.99
37367292--37367354	21	3.0	21	86	6	83	31	3	31	33	1.74
37367303--37367335	11	3.1	11	82	8	50	33	0	36	30	1.58
37368432--37368473	10	4.3	10	78	6	50	28	11	23	35	1.91
37371432--37371486	19	2.8	19	81	10	58	9	12	1	76	1.10
37371458--37371506	21	2.5	19	87	12	64	4	16	2	77	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37373773--37373994	40	5.6	39	81	4	203	24	29	21	24	1.99
37373771--37373941	79	2.2	79	84	0	225	25	30	21	23	1.99
37376816--37376874	17	3.6	17	72	25	56	13	6	5	74	1.19
37376818--37376887	31	2.3	30	79	16	72	11	8	4	75	1.16
37377186--37377248	21	3.0	21	86	6	83	31	3	31	33	1.74
37377197--37377229	11	3.1	11	82	8	50	33	0	36	30	1.58
37378327--37378368	10	4.3	10	78	6	50	28	11	23	35	1.91
37381984--37382115	50	2.6	51	77	8	142	34	17	10	37	1.84
37382733--37382771	18	2.2	18	86	9	53	56	10	12	20	1.65
37383976--37384045	36	1.9	36	82	0	86	22	14	32	30	1.94
37387511--37388022	40	12.8	40	92	1	812	25	27	19	27	1.99
37393562--37393609	18	2.7	18	87	3	71	12	18	0	68	1.20
37393562--37393603	17	2.4	17	92	4	66	14	19	0	66	1.25
37408128--37408196	35	2.0	35	82	0	84	30	21	18	28	1.97
37410603--37410637	18	1.9	18	94	0	61	11	14	2	71	1.25
37416887--37417134	27	9.2	27	86	4	331	47	19	13	19	1.82
37421236--37421294	25	2.4	25	88	0	82	25	11	37	25	1.90
37423973--37424335	197	1.8	196	92	0	618	34	14	20	30	1.92
37426406--37426505	51	1.9	52	91	2	166	30	13	18	39	1.88
37430911--37430965	26	2.1	26	100	0	110	30	3	27	38	1.74
37431232--37431358	39	3.3	37	81	7	137	45	13	7	33	1.72
37431267--37431358	39	2.4	38	90	3	148	45	10	7	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37434216--37434249	13	2.5	13	95	4	59	20	11	0	67	1.21
37444790--37444814	13	1.9	13	100	0	50	32	20	16	32	1.94
37446246--37446587	47	7.2	47	88	2	495	31	8	30	29	1.87
37446246--37446587	96	3.6	96	91	0	517	31	8	30	29	1.87
37446249--37446587	143	2.4	143	89	3	506	32	8	30	28	1.87
37446705--37446783	37	2.1	37	90	0	122	24	18	31	25	1.98
37448717--37448934	119	1.8	120	83	6	291	27	27	20	25	1.99
37448717--37448941	40	5.7	40	85	6	278	26	27	21	24	1.99
37456627--37456798	40	4.3	40	94	2	276	26	27	21	24	1.99
37456627--37456838	80	2.7	80	86	5	279	25	27	21	25	1.99
37468383--37468604	118	1.9	119	84	6	299	25	27	21	24	1.99
37468383--37468606	40	5.7	40	85	7	287	25	27	21	24	1.99
37476288--37476512	119	1.9	120	84	6	305	25	27	22	24	2.00
37476288--37476512	40	5.7	40	86	6	296	25	27	22	24	2.00
37486388--37486417	14	2.1	15	93	6	53	23	20	20	36	1.95
37496479--37496603	62	2.0	62	79	3	135	24	24	25	25	2.00
37502511--37502610	27	3.6	27	86	8	112	32	29	12	27	1.92
37502513--37502610	28	3.5	28	91	2	144	32	28	12	26	1.92
37503063--37503090	14	2.0	14	100	0	56	42	0	7	50	1.30
37506336--37506412	32	2.5	31	82	4	91	20	18	31	29	1.96
37510367--37510446	32	2.5	32	95	2	144	32	31	18	17	1.94
37522467--37522608	63	2.3	59	82	7	151	46	14	13	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37529735--37529959	40	5.7	40	83	6	233	25	27	20	25	1.99
37529891--37529968	40	1.9	41	82	10	97	28	28	19	24	1.98
37532802--37532945	39	3.7	39	81	5	134	44	10	9	35	1.72
37536907--37536935	9	3.3	9	95	4	51	10	6	0	82	0.83
37540422--37540604	39	4.7	40	80	8	198	25	26	22	25	2.00
37548374--37548558	79	2.3	82	83	7	229	24	27	22	24	2.00
37548355--37548558	40	5.1	40	81	8	229	24	27	22	25	2.00
37567863--37567995	40	3.3	40	90	2	187	27	27	20	24	1.99
37567863--37568046	80	2.3	81	81	6	205	26	27	21	25	1.99
37570576--37570619	23	2.0	23	86	4	63	38	11	9	40	1.73
37582883--37582986	38	2.7	38	82	8	115	28	4	15	50	1.64
37582902--37582988	18	4.7	18	75	12	86	28	4	14	51	1.62
37585860--37585918	24	2.4	24	81	10	75	61	1	1	35	1.16
37593884--37593940	27	2.1	27	93	0	96	31	15	19	33	1.93
37596727--37596920	20	9.7	20	68	8	117	15	31	17	35	1.91
37596727--37596934	40	5.2	40	90	0	317	14	32	17	35	1.91
37601863--37602112	127	2.0	127	94	1	439	51	16	11	21	1.75
37604555--37604598	23	1.9	22	82	17	54	36	25	0	38	1.56
37604745--37604927	51	3.6	50	82	3	242	30	25	18	25	1.98
37604743--37604929	101	1.8	101	91	3	313	30	26	17	25	1.97
37612994--37613018	11	2.3	11	100	0	50	60	8	0	32	1.26
37615255--37615367	43	2.7	43	78	12	117	33	27	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37615261--37615531	41	6.5	41	80	7	235	29	23	19	27	1.98
37618692--37618732	20	2.1	19	86	4	55	19	12	4	63	1.46
37622710--37622736	2	13.5	2	100	0	54	51	0	0	48	1.00
37636498--37636525	10	2.8	10	100	0	56	71	17	10	0	1.14
37639960--37639988	13	2.2	13	100	0	58	48	6	10	34	1.64
37642620--37642704	27	3.1	27	79	11	77	30	2	2	64	1.18
37642691--37642761	35	2.0	36	86	8	101	29	5	2	61	1.33
37644461--37644511	22	2.4	22	83	9	61	47	13	15	23	1.82
37646693--37646749	23	2.5	23	75	13	55	42	8	17	31	1.80
37648897--37648921	2	12.5	2	100	0	50	52	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213