genome.fa.s14.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  175  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52710956--52710990	14	2.6	14	90	4	54	22	0	8	68	1.16
52714031--52714108	36	2.2	36	97	0	147	57	12	14	15	1.65
52716735--52716789	22	2.5	22	84	0	65	29	20	25	25	1.99
52719699--52719749	26	2.0	26	100	0	102	39	9	15	35	1.81
52733912--52733941	3	10.3	3	92	7	53	70	0	0	30	0.88
52736804--52736863	28	2.1	28	87	0	84	31	15	16	36	1.90
52742237--52742343	20	5.3	20	75	4	81	14	29	16	39	1.88
52742482--52742508	7	3.9	7	100	0	54	44	0	14	40	1.46
52744866--52744894	13	2.2	13	100	0	58	41	0	0	58	0.98
52745322--52745357	16	2.2	16	90	9	56	13	11	0	75	1.06
52753718--52753760	13	3.1	14	84	12	54	60	0	0	39	0.97
52759065--52759137	25	3.0	24	82	7	85	31	19	27	21	1.97
52772261--52772302	22	1.9	22	85	9	59	45	26	0	28	1.54
52772667--52772765	3	33.0	3	97	0	189	0	32	0	67	0.91
52772788--52772827	21	1.9	21	84	0	53	20	25	10	45	1.81
52779776--52779827	21	2.5	22	87	6	72	30	0	0	69	0.89
52782643--52782875	54	4.1	54	73	14	225	42	1	7	48	1.42
52782745--52782796	15	3.6	15	80	12	56	44	0	1	53	1.11
52782697--52782912	120	1.8	120	100	0	432	42	1	6	49	1.38
52782874--52782915	15	2.7	16	82	14	52	45	0	2	52	1.13
52782865--52782906	15	2.9	15	82	10	52	47	0	0	52	1.00
52783116--52783167	16	3.2	16	91	0	86	36	34	0	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52784084--52784132	25	2.0	25	84	15	66	53	0	0	46	1.00
52785299--52785343	20	2.2	21	84	11	67	13	13	17	55	1.69
52787203--52787365	45	3.6	45	83	2	168	39	15	19	25	1.91
52787248--52787494	45	5.5	46	79	8	204	43	14	20	21	1.88
52787248--52787494	46	5.5	45	81	8	225	43	14	20	21	1.88
52788821--52788890	26	2.7	27	88	6	108	28	28	21	21	1.99
52799060--52799104	21	2.1	21	87	0	63	46	0	20	33	1.51
52799702--52799737	16	2.2	16	100	0	72	38	0	13	47	1.44
52805159--52805230	26	2.8	26	80	0	81	31	20	9	37	1.85
52812145--52812174	15	2.0	15	93	0	51	33	36	6	23	1.81
52813486--52813679	104	1.9	104	100	0	388	37	13	7	42	1.72
52816200--52816325	3	42.0	3	80	0	117	30	7	3	58	1.40
52821787--52821925	74	1.9	74	82	5	174	34	16	15	33	1.90
52821777--52821925	37	4.0	37	80	5	158	33	16	15	34	1.91
52830040--52830181	47	3.1	47	86	4	198	23	21	11	42	1.86
52830045--52830179	45	3.0	45	88	2	189	24	22	11	40	1.88
52831512--52831570	21	2.7	22	89	10	95	33	28	25	11	1.91
52831496--52831606	23	5.0	23	81	7	88	36	23	21	18	1.95
52831863--52831964	51	2.0	51	96	0	186	42	23	1	32	1.65
52832374--52832488	41	2.8	42	81	5	128	25	16	23	34	1.95
52836218--52836563	124	2.8	124	94	0	595	29	16	21	33	1.95
52839679--52839858	55	3.3	55	93	2	299	44	5	11	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52839853--52840205	29	12.3	29	91	4	554	30	0	25	43	1.55
52839853--52840205	88	4.1	87	93	5	608	30	0	25	43	1.55
52839853--52840205	59	6.1	58	92	3	572	30	0	25	43	1.55
52842517--52842582	31	2.2	30	94	2	114	62	0	1	36	1.05
52842583--52842695	51	2.2	51	95	0	199	41	0	29	29	1.56
52843047--52843244	43	4.5	43	81	5	202	23	17	28	30	1.97
52848537--52848588	27	1.9	27	88	0	77	15	28	17	38	1.90
52848692--52848843	47	3.4	45	78	8	173	25	23	8	42	1.82
52865461--52865569	41	2.7	41	88	0	146	26	20	23	29	1.99
52865929--52865997	18	3.3	18	70	30	57	34	5	14	44	1.69
52865940--52866014	25	3.2	25	78	18	106	30	8	16	45	1.75
52865925--52866014	45	2.0	45	100	0	180	33	6	15	44	1.73
52865925--52865993	20	3.2	20	77	18	84	36	5	14	43	1.70
52867531--52867555	5	5.0	5	100	0	50	20	0	0	80	0.72
52874222--52874328	53	2.0	53	96	3	198	40	12	25	22	1.88
52880759--52880783	5	5.0	5	100	0	50	20	0	0	80	0.72
52881199--52881244	2	23.0	2	100	0	92	50	50	0	0	1.00
52882162--52882301	41	3.4	41	86	2	194	20	24	6	49	1.72
52882463--52882501	20	2.0	20	84	0	51	51	2	5	41	1.38
52886430--52886472	17	2.5	17	84	0	59	27	32	23	16	1.96
52890698--52890726	15	1.9	15	100	0	58	27	27	13	31	1.94
52891564--52891592	15	1.9	15	100	0	58	27	27	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52892431--52892459	15	1.9	15	100	0	58	27	27	13	31	1.94
52890400--52893866	866	4.0	867	98	0	6722	38	19	10	30	1.87
52893298--52893326	15	1.9	15	100	0	58	27	27	13	31	1.94
52921337--52921427	45	2.0	45	93	0	155	31	24	17	26	1.97
52921433--52921568	50	2.7	52	86	5	197	30	27	17	25	1.97
52921422--52921568	51	2.9	51	83	5	190	29	27	17	25	1.98
52929784--52929826	13	3.4	13	80	6	61	23	37	18	20	1.94
52931281--52931306	13	2.0	13	100	0	52	30	7	30	30	1.85
52936215--52936246	16	2.0	16	93	0	55	25	15	0	59	1.36
52936383--52936470	46	1.9	45	82	11	108	32	27	15	23	1.95
52936476--52936662	51	3.7	51	79	9	222	30	26	17	25	1.97
52936474--52936658	101	1.8	102	89	5	295	30	26	17	24	1.97
52936469--52936692	101	2.2	102	81	7	269	29	27	16	25	1.97
52948575--52948614	22	2.0	21	85	14	57	55	15	2	27	1.53
52949269--52949385	43	2.7	43	74	12	123	29	29	21	18	1.97
52955472--52955563	26	3.5	26	83	0	130	16	14	31	38	1.88
52960472--52960584	12	9.8	12	69	20	55	39	1	4	53	1.31
52960472--52960588	37	3.4	37	70	19	99	38	2	4	54	1.34
52960472--52960547	11	6.8	11	72	21	52	40	1	2	55	1.22
52962593--52962624	9	3.6	9	91	0	55	25	3	18	53	1.59
52962600--52962770	91	1.9	90	90	3	272	36	7	9	47	1.63
52963473--52963525	27	2.0	27	88	0	79	37	18	22	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52967139--52967186	24	2.0	24	84	8	62	45	0	14	39	1.45
52971192--52971330	37	3.8	36	91	3	197	28	30	16	24	1.97
52971193--52971330	74	1.9	74	90	0	222	28	30	16	24	1.97
52971449--52972149	47	14.7	47	94	2	1125	29	29	8	32	1.87
52971449--52972149	143	4.9	141	93	2	1125	29	29	8	32	1.87
52975318--52975376	25	2.5	24	89	8	93	54	6	3	35	1.44
52975626--52975677	27	1.9	27	88	0	77	17	26	34	21	1.95
52976870--52976919	18	2.9	17	84	3	64	52	0	2	46	1.12
52995005--52995146	63	2.3	63	79	0	149	26	6	33	33	1.82
52998428--52998485	28	2.1	28	100	0	116	32	17	15	34	1.91
53000751--53000775	12	2.1	12	100	0	50	24	36	24	16	1.94
53000936--53000990	9	6.2	9	95	2	85	41	25	10	21	1.86
53011035--53011064	15	2.0	15	100	0	60	33	33	13	20	1.91
53018028--53018068	21	2.0	21	100	0	82	34	21	14	29	1.93
53018271--53018318	2	24.0	2	100	0	96	0	50	0	50	1.00
53018423--53018464	21	2.0	21	95	0	75	38	26	14	21	1.91
53023322--53023367	18	2.7	18	90	6	69	32	10	13	43	1.78
53026711--53026763	19	2.8	20	82	8	65	30	33	7	28	1.85
53027140--53027194	28	1.9	29	85	3	76	32	14	21	30	1.93
53037934--53037977	23	1.9	23	90	0	70	52	0	6	40	1.28
53038638--53038687	24	2.0	25	92	3	84	30	8	14	48	1.72
53040596--53040790	41	4.8	41	84	3	250	32	29	20	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53055179--53055220	22	1.9	22	90	9	68	57	9	14	19	1.64
53056594--53056754	24	6.6	24	71	12	112	28	39	7	24	1.82
53056615--53057105	48	8.9	56	72	18	304	28	37	10	23	1.89
53056796--53056910	33	3.5	33	86	0	158	27	37	12	22	1.90
53056706--53057078	114	3.3	110	89	7	486	28	37	11	23	1.89
53056934--53057030	33	2.9	33	84	0	131	30	37	10	21	1.87
53057033--53057095	24	2.6	24	77	5	65	17	44	15	22	1.86
53056744--53057079	114	2.9	114	93	4	537	27	36	12	23	1.90
53057077--53057184	57	1.9	57	84	0	144	25	39	12	21	1.89
53057261--53057296	18	2.0	18	89	10	56	22	47	5	25	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213