genome.fa.s14.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  34  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9176184--9176252	20	3.4	19	79	15	68	53	2	20	23	1.59
9176204--9176270	21	3.2	21	78	16	61	53	5	19	20	1.66
9181495--9181519	3	8.3	3	100	0	50	0	32	0	68	0.90
9185974--9186007	18	1.9	17	88	5	50	50	11	11	26	1.73
9188758--9188952	98	2.0	98	93	2	338	37	24	9	28	1.86
9190403--9190534	19	6.8	19	91	3	219	36	15	10	37	1.82
9190396--9190533	59	2.4	59	91	4	221	36	14	10	38	1.80
9190751--9191091	44	7.9	43	72	11	225	28	22	20	28	1.99
9190710--9191002	44	6.7	44	74	14	162	27	23	20	28	1.99
9190700--9191114	217	1.9	217	89	1	643	27	24	19	28	1.99
9190752--9191223	217	2.2	215	80	6	488	27	23	20	28	1.99
9191076--9191464	132	2.9	132	94	0	670	24	25	20	29	1.99
9191168--9191365	44	4.5	44	65	14	111	26	25	19	28	1.98
9197262--9197456	98	2.0	98	95	0	354	36	24	10	28	1.89
9197741--9197795	9	6.1	9	77	12	51	65	3	1	29	1.20
9198912--9199043	19	6.8	19	91	3	219	36	15	10	37	1.82
9198905--9199042	59	2.4	59	91	4	221	36	14	10	38	1.80
9200041--9200093	20	2.7	20	72	21	56	50	9	20	18	1.74
9202347--9202384	21	1.9	20	89	10	60	71	2	7	18	1.23
9206752--9207745	218	4.6	218	93	1	1593	27	22	20	29	1.99
9207015--9208608	85	18.4	87	71	11	521	28	21	19	30	1.97
9207595--9208519	129	7.2	129	93	0	1530	29	21	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9209828--9209874	7	7.0	7	85	9	71	12	17	0	70	1.17
9209828--9209874	13	3.5	14	85	8	71	12	17	0	70	1.17
9209828--9209874	20	2.3	20	92	0	76	12	17	0	70	1.17
9210855--9210879	13	1.9	13	100	0	50	12	0	0	88	0.53
9210825--9210893	22	3.0	22	81	8	59	8	8	2	79	1.02
9217191--9217866	44	15.5	44	69	11	216	28	21	21	28	1.98
9217134--9217511	174	2.2	174	88	0	549	28	22	20	28	1.99
9217173--9217953	218	3.6	214	86	4	991	28	22	20	28	1.98
9217149--9217424	87	3.2	88	71	14	266	26	21	23	28	1.99
9217191--9217604	174	2.4	174	84	3	494	28	21	21	29	1.98
9217091--9217822	392	1.9	392	84	4	983	28	21	20	29	1.98
9217243--9217948	87	8.1	86	69	14	333	28	21	21	28	1.99
9217269--9217969	218	3.2	218	90	3	1076	28	22	20	28	1.98
9221136--9221174	17	2.2	18	90	4	62	35	10	5	48	1.59
9221143--9221242	18	5.7	18	76	7	98	30	11	11	48	1.73
9221144--9221242	35	2.8	35	77	7	110	30	11	11	47	1.74
9230520--9230579	9	6.6	9	77	11	59	83	8	6	1	0.88
9231461--9232457	77	13.0	78	84	5	1159	26	16	20	36	1.93
9231461--9232457	305	3.3	306	85	4	1277	26	16	20	36	1.93
9232613--9232676	29	2.2	29	86	5	85	34	17	7	40	1.78
9233031--9233080	3	16.7	3	95	0	91	66	0	32	2	1.03
9233021--9233132	6	18.0	6	77	14	75	74	0	23	1	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9233085--9233138	19	2.9	19	86	2	74	79	1	14	3	0.95
9233023--9233138	21	5.9	18	79	8	79	75	0	21	2	0.98
9233295--9233347	25	2.1	26	92	3	90	22	45	30	1	1.63
9233395--9233419	8	3.1	8	100	0	50	88	0	12	0	0.53
9233403--9233441	21	1.9	21	89	5	62	79	2	17	0	0.84
9233762--9234226	18	25.9	18	70	17	242	32	12	10	44	1.77
9233762--9234217	35	12.8	36	75	9	319	33	12	10	43	1.77
9233804--9234107	107	2.8	106	85	4	385	32	12	11	44	1.78
9238252--9238445	104	1.9	101	80	6	221	44	9	13	31	1.77
9238342--9238375	18	1.9	17	88	5	50	50	11	11	26	1.73
9242432--9242484	20	2.7	20	72	21	56	50	9	20	18	1.74
9244748--9244785	21	1.9	20	89	10	60	71	2	7	18	1.23
9246832--9248684	917	2.0	924	86	5	2578	35	11	14	37	1.83
9248726--9248759	18	1.9	17	88	5	50	50	11	11	26	1.73
9249725--9249767	18	2.4	18	84	7	52	16	6	4	72	1.24
9249725--9249770	19	2.6	18	86	6	58	17	6	4	71	1.24
9260081--9260341	85	3.1	84	79	8	235	28	25	19	26	1.99
9260124--9260383	43	6.1	43	76	3	184	29	27	17	25	1.97
9260124--9260366	85	2.8	85	80	6	251	27	27	18	25	1.98
9260564--9260601	19	2.0	19	94	0	67	57	2	10	28	1.45
9263264--9263289	12	2.2	12	100	0	52	38	19	26	15	1.91
9264259--9264300	17	2.3	19	88	8	61	21	19	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9269743--9269777	10	3.6	10	92	3	54	80	0	17	2	0.84
9269910--9270003	28	3.3	28	73	8	91	34	39	18	8	1.81
9282336--9282713	75	5.0	75	88	0	479	26	17	20	35	1.95
9283275--9283344	27	2.5	29	86	4	99	22	21	8	47	1.78
9284348--9284386	12	3.2	12	88	3	51	82	0	15	2	0.79
9284524--9284614	46	2.0	46	84	4	121	28	43	15	12	1.82
9285681--9285716	17	2.1	17	89	0	54	25	19	22	33	1.97
9291160--9291230	30	2.3	30	80	2	88	36	18	0	45	1.50
9303959--9304096	40	3.5	40	76	6	147	31	23	17	27	1.97
9304995--9305089	4	22.0	4	83	12	93	2	23	2	72	1.06
9304995--9305089	30	3.3	30	81	12	94	2	23	2	72	1.06
9304995--9305089	45	2.1	46	88	5	140	2	23	2	72	1.06
9304995--9305089	41	2.4	39	87	8	131	2	23	2	72	1.06
9306344--9306484	71	2.0	71	100	0	282	28	21	24	25	1.99
9306846--9307039	102	1.9	102	95	0	352	18	16	14	51	1.77
9308751--9308887	63	2.2	62	84	5	177	23	29	23	23	1.99
9309466--9309494	14	2.0	15	93	6	51	75	3	20	0	0.94
9310817--9310867	21	2.4	21	83	6	59	37	1	19	41	1.63
9311326--9311382	26	2.2	26	83	0	69	19	24	19	36	1.94
9311326--9311463	25	5.5	25	68	12	77	18	26	21	34	1.96
9311360--9311516	73	2.2	73	80	4	165	17	26	21	34	1.96
9324655--9324707	21	2.5	21	81	3	61	54	13	7	24	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9324698--9324746	17	2.8	17	76	14	55	55	4	4	36	1.38
9325628--9325690	32	2.0	32	87	6	92	38	9	17	34	1.82
9328310--9328336	4	6.8	4	100	0	54	77	0	0	22	0.76
9328882--9328920	6	6.3	6	88	11	53	0	15	0	84	0.62
9331193--9331230	19	2.0	19	89	0	58	28	7	0	63	1.23
9335850--9335910	26	2.4	24	78	13	59	62	1	1	34	1.15
9339594--9339662	30	2.3	30	82	2	84	40	1	7	50	1.39
9339595--9339639	22	2.0	22	83	12	56	35	2	4	57	1.31
9339934--9340025	30	3.1	29	71	10	78	38	8	14	39	1.77
9341818--9341856	14	2.6	15	84	8	53	66	5	2	25	1.25
9346135--9346188	11	4.8	12	76	19	62	29	29	0	40	1.57
9346129--9346188	23	2.6	22	80	19	70	30	28	0	41	1.56
9346150--9346247	51	1.9	51	85	4	135	28	23	2	45	1.64
9346245--9346278	10	3.4	10	91	0	50	23	0	0	76	0.79
9348062--9348101	18	2.2	18	90	0	62	20	32	7	40	1.80
9348564--9348699	60	2.3	60	100	0	272	35	4	11	49	1.58
9351848--9351902	25	2.2	24	81	12	58	45	5	10	38	1.63
9354619--9355040	125	3.4	124	90	2	675	29	22	18	29	1.97
9367477--9367512	15	2.3	16	85	9	56	25	41	8	25	1.83
9370534--9370594	31	2.0	31	96	0	113	27	4	26	40	1.76
9373934--9373963	15	2.0	15	100	0	60	20	20	46	13	1.83
9383097--9383121	12	2.1	12	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9384321--9384467	49	3.0	49	87	4	206	31	29	15	23	1.95
9385345--9385377	2	16.5	2	93	0	57	48	0	0	51	1.00
9386090--9386220	67	2.0	67	92	3	219	26	32	19	22	1.97
9389013--9389106	39	2.4	39	80	3	100	32	17	27	22	1.96
9389142--9389379	41	5.8	41	83	3	291	20	21	27	30	1.98
9389144--9389379	123	1.9	123	86	3	341	20	22	26	30	1.98
9390200--9390448	43	5.8	43	80	2	223	20	20	30	28	1.97
9390195--9390448	86	2.9	85	80	4	258	22	19	29	28	1.98
9390205--9390448	129	1.9	130	82	2	312	20	19	30	29	1.97
9392352--9392546	98	2.0	98	93	0	336	36	24	11	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213