genome.fa.s14.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  112  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32048398--32048501	29	3.6	29	71	6	93	36	20	17	25	1.94
32048525--32048631	52	2.1	52	100	0	214	20	29	13	36	1.90
32051820--32052012	50	3.8	50	88	0	269	21	30	22	26	1.99
32061065--32061108	22	2.0	22	95	0	79	47	4	2	45	1.35
32063411--32063567	43	3.7	43	75	13	121	33	26	17	23	1.96
32070346--32070450	29	3.6	29	73	6	95	34	20	17	28	1.95
32074869--32074898	3	10.0	3	100	0	60	33	0	0	66	0.92
32080432--32080463	2	16.0	2	100	0	64	50	0	0	50	1.00
32080636--32080707	35	2.1	35	84	5	92	37	8	2	51	1.47
32081255--32081284	13	2.3	13	94	0	51	63	0	0	36	0.95
32081257--32081295	19	2.1	18	90	4	60	64	0	2	33	1.08
32085512--32085717	111	1.9	111	88	0	313	31	15	21	31	1.95
32086422--32086451	15	2.0	15	93	0	51	50	6	6	36	1.55
32088108--32088161	28	2.0	26	89	7	81	50	0	1	48	1.11
32088768--32088808	22	1.9	22	85	5	57	53	0	0	46	1.00
32094951--32094996	21	2.2	21	88	0	65	26	23	36	13	1.91
32100381--32100435	27	2.0	27	89	0	83	41	1	12	43	1.53
32102088--32102480	54	7.3	54	81	3	375	27	21	15	36	1.93
32102090--32102471	161	2.4	162	82	3	457	27	21	14	36	1.93
32102088--32102478	108	3.6	108	80	6	443	27	21	15	36	1.93
32102102--32102510	215	1.9	215	81	3	500	27	21	15	36	1.93
32102516--32102668	23	6.6	22	65	14	76	37	19	9	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32102519--32102641	47	2.6	47	88	0	183	40	18	8	32	1.80
32102629--32102675	22	2.1	22	92	0	76	34	23	10	31	1.89
32102658--32102767	24	4.6	24	77	4	96	37	17	10	34	1.85
32102604--32102777	72	2.5	69	78	4	179	36	18	9	35	1.84
32103156--32103182	14	1.9	14	100	0	54	55	7	0	37	1.28
32104315--32104353	19	2.1	19	95	4	71	43	10	17	28	1.82
32107745--32107798	22	2.5	21	93	3	90	50	7	0	42	1.30
32107745--32107805	21	2.8	20	83	9	68	52	6	0	40	1.27
32108008--32108042	3	11.7	3	100	0	70	31	0	0	68	0.90
32108369--32108542	93	1.9	94	85	3	244	44	8	16	31	1.77
32109270--32109315	19	2.3	20	77	3	58	58	13	0	28	1.35
32109259--32109315	19	3.1	19	73	11	57	63	10	0	26	1.27
32109404--32109438	14	2.5	14	90	0	52	51	5	8	34	1.56
32115286--32115352	18	3.5	18	72	11	62	53	0	2	43	1.16
32117745--32117801	3	19.0	3	100	0	114	66	0	0	33	0.92
32118265--32118428	17	9.8	15	67	23	64	45	11	12	31	1.77
32118297--32118457	17	9.2	19	71	16	109	45	10	11	31	1.75
32118400--32118479	17	4.5	17	69	14	54	41	12	15	31	1.84
32118472--32118527	17	3.2	17	69	14	51	41	5	14	39	1.68
32118381--32118493	55	2.1	55	86	6	158	42	11	14	31	1.81
32118470--32118533	18	3.6	18	78	6	76	42	4	14	39	1.66
32118824--32118865	5	8.2	5	84	5	57	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32119051--32119106	20	2.7	21	84	10	71	0	21	0	78	0.75
32119044--32119094	24	2.0	27	88	11	81	0	25	0	74	0.82
32119060--32119100	17	2.5	16	84	7	55	0	24	0	75	0.80
32119160--32119196	19	1.9	19	88	0	56	2	27	40	29	1.70
32119354--32119395	22	1.9	22	85	9	59	2	38	0	59	1.10
32119903--32119984	30	2.8	30	84	1	121	42	2	20	34	1.65
32120204--32120560	76	4.6	76	86	5	471	37	18	17	26	1.93
32121921--32122143	40	5.6	40	82	10	237	25	27	21	25	2.00
32121921--32122144	79	2.8	80	86	7	289	25	27	21	25	2.00
32123752--32124273	79	6.8	79	82	6	513	35	19	16	29	1.94
32123749--32124260	155	3.3	157	80	7	552	34	19	16	29	1.94
32125123--32125185	6	10.5	6	81	13	67	1	3	12	82	0.86
32125141--32125184	9	4.9	9	86	8	63	0	0	18	81	0.68
32127168--32127389	107	2.1	107	96	0	408	52	11	18	18	1.74
32137614--32137638	11	2.3	11	100	0	50	28	12	32	28	1.92
32139150--32139402	18	14.4	17	73	16	155	42	11	13	32	1.80
32139150--32139402	17	14.4	16	72	16	141	42	11	13	32	1.80
32139150--32139390	35	6.8	35	75	11	197	43	11	13	31	1.80
32139906--32139965	11	5.6	11	68	7	52	0	20	0	80	0.72
32140021--32140057	19	1.9	19	88	0	56	0	27	40	32	1.57
32140196--32140257	7	9.0	7	78	3	63	0	24	0	75	0.80
32140196--32140258	14	4.6	14	84	4	74	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32140365--32140397	9	3.8	9	88	4	50	0	21	0	78	0.75
32141578--32141622	21	2.1	21	84	8	56	42	0	0	57	0.98
32141702--32141735	17	1.9	18	88	5	52	55	0	5	38	1.24
32145727--32145874	42	3.5	42	85	0	152	16	19	18	45	1.85
32145777--32145876	21	4.8	21	75	2	76	15	22	19	44	1.87
32148878--32148918	21	2.0	21	95	0	73	41	0	9	48	1.36
32154259--32154428	92	1.8	92	82	5	218	24	17	24	33	1.96
32156956--32156993	17	2.3	16	83	16	51	78	5	13	2	1.02
32171524--32171567	5	8.8	5	94	0	61	40	6	18	34	1.77
32172153--32172285	66	2.0	66	88	4	198	47	18	24	9	1.78
32174799--32174921	65	1.9	65	91	3	203	45	17	26	11	1.81
32175449--32175487	5	7.8	5	100	0	78	41	0	17	41	1.50
32178725--32178835	51	2.2	51	83	8	145	28	18	8	44	1.79
32179336--32179382	24	2.0	24	100	0	94	23	8	29	38	1.84
32184000--32184032	13	2.5	13	95	5	57	9	0	15	75	1.03
32194691--32194732	21	2.0	21	95	0	75	42	7	7	42	1.59
32197197--32197371	27	6.5	27	81	5	176	28	29	16	26	1.96
32197197--32197372	55	3.3	53	83	5	212	28	28	15	26	1.96
32197217--32197371	82	1.9	80	86	5	222	28	29	16	26	1.97
32205329--32205506	27	6.6	27	83	5	180	29	28	15	27	1.96
32205350--32205505	82	1.9	81	86	3	224	28	28	15	27	1.96
32210076--32210129	19	2.8	19	97	0	99	37	9	16	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32210266--32210340	38	1.9	38	89	5	114	58	6	20	14	1.58
32215164--32215196	11	3.0	11	95	0	57	87	0	12	0	0.53
32215164--32215196	6	5.8	6	86	13	52	87	0	12	0	0.53
32216404--32216822	44	9.5	42	76	12	346	27	16	26	29	1.97
32216404--32216823	88	4.8	90	77	7	407	27	16	26	29	1.97
32216404--32216810	132	3.1	132	95	0	715	27	15	27	29	1.96
32216857--32217056	44	4.5	44	81	3	242	25	19	27	27	1.99
32216804--32217126	132	2.4	132	71	13	311	26	22	26	25	2.00
32217905--32217947	20	2.1	21	95	4	79	37	9	13	39	1.78
32217904--32217958	20	2.8	19	81	5	74	36	9	16	38	1.80
32220020--32220099	42	1.9	42	87	5	117	45	21	13	20	1.85
32221598--32221626	14	2.0	15	93	6	51	27	6	20	44	1.77
32222771--32222894	43	2.9	43	81	11	146	20	20	28	30	1.98
32231177--32231271	45	2.1	45	88	0	145	27	21	23	28	1.99
32233905--32233960	29	1.9	29	85	0	76	39	17	16	26	1.91
32234477--32234856	104	3.6	105	85	7	490	25	0	13	60	1.39
32236909--32236954	6	7.7	6	100	0	92	32	32	34	0	1.58
32237422--32237530	48	2.3	48	87	3	148	46	7	10	35	1.65
32241208--32241266	23	2.6	24	73	10	61	3	32	0	64	1.10
32244414--32244481	32	2.1	33	83	8	86	14	14	22	48	1.80
32246683--32246716	16	2.1	16	88	0	50	64	5	23	5	1.38
32252464--32252509	12	3.8	12	88	2	56	80	4	10	4	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32252464--32252509	18	2.5	19	85	7	76	80	4	10	4	0.99
32252470--32252504	6	5.8	6	100	0	70	85	0	14	0	0.59
32252483--32252568	31	2.7	30	77	21	95	73	5	11	9	1.25
32254957--32255148	44	4.3	45	72	12	130	31	22	21	24	1.98
32254957--32255122	88	1.9	88	82	2	208	31	22	22	23	1.99
32255134--32255663	100	5.3	100	89	0	765	32	24	19	23	1.97
32255212--32255663	50	9.0	50	70	4	293	33	23	19	23	1.97
32255677--32255805	50	2.6	50	81	3	125	31	21	17	29	1.96
32256398--32256431	16	2.1	16	94	0	59	64	2	26	5	1.30
32261785--32261821	19	2.0	19	89	5	58	48	2	0	48	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213