genome.fa.s14.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  183  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55162636--55162919	90	3.2	90	79	5	313	26	8	13	52	1.68
55162968--55162996	15	1.9	15	100	0	58	24	6	0	68	1.13
55165636--55165725	30	3.3	30	66	24	81	33	7	2	56	1.40
55165779--55165996	30	7.2	30	64	23	116	32	3	0	62	1.19
55165686--55166121	64	6.9	63	84	7	530	32	6	1	60	1.31
55165744--55165851	34	3.3	33	68	24	84	30	7	0	61	1.30
55165847--55165942	22	4.5	22	70	15	67	31	3	1	64	1.16
55165686--55166121	118	3.5	124	82	11	439	32	6	1	60	1.31
55165960--55166055	22	4.5	22	66	16	58	33	6	0	60	1.22
55165638--55166121	246	2.0	245	84	4	645	32	6	1	59	1.32
55166091--55166146	24	2.3	24	84	0	67	23	5	5	66	1.34
55168724--55168759	14	2.6	14	86	13	56	66	0	2	30	1.06
55174857--55174894	17	2.2	18	90	4	60	44	0	0	55	0.99
55184383--55184442	24	2.4	25	94	2	104	61	0	1	36	1.06
55185735--55185806	30	2.5	28	80	10	81	63	6	2	26	1.33
55185735--55185806	29	2.4	30	82	8	85	63	6	2	26	1.33
55188143--55188186	24	1.9	22	90	9	70	34	9	0	56	1.31
55203995--55204043	4	12.2	4	100	0	98	51	24	0	24	1.49
55204041--55204065	2	12.5	2	100	0	50	52	48	0	0	1.00
55205261--55205300	16	2.4	17	83	4	55	47	2	0	50	1.14
55215589--55215662	39	1.9	38	83	8	96	31	6	6	55	1.52
55217303--55217418	25	4.6	25	74	6	83	36	20	21	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55219922--55220008	42	2.1	41	83	10	106	57	5	3	33	1.39
55219982--55220312	61	5.5	59	83	9	411	52	4	12	30	1.59
55219991--55220311	121	2.7	121	86	4	436	52	4	11	30	1.58
55220743--55220785	21	2.0	21	100	0	86	27	0	9	62	1.25
55221326--55221666	171	2.0	171	92	1	576	44	11	15	28	1.81
55228765--55228815	15	3.7	13	80	17	50	29	1	0	68	1.00
55234011--55234049	19	2.1	19	90	0	60	38	2	12	46	1.56
55239422--55239487	23	3.0	23	72	12	57	40	3	3	53	1.32
55242370--55242416	24	2.0	24	82	0	58	40	4	25	29	1.75
55242538--55242570	13	2.4	14	90	5	50	78	6	15	0	0.93
55242581--55242617	18	2.1	18	89	0	56	72	0	21	5	1.04
55242516--55242676	73	2.2	72	88	2	252	70	5	19	4	1.24
55242712--55242736	6	4.2	6	100	0	50	84	0	16	0	0.63
55243104--55243137	17	1.9	18	88	5	52	41	0	23	35	1.55
55244873--55245099	27	8.5	26	82	8	242	42	20	18	18	1.90
55244878--55245099	54	4.1	54	83	6	272	42	20	18	18	1.89
55244878--55245098	81	2.7	79	86	3	309	42	20	18	18	1.89
55244876--55245126	81	3.1	78	81	8	283	41	20	18	19	1.91
55250957--55251007	21	2.4	21	72	18	52	43	15	21	19	1.88
55250945--55251053	42	2.6	42	77	10	105	45	16	19	18	1.85
55252588--55252668	29	2.8	28	78	10	81	19	4	4	70	1.25
55256931--55257006	27	2.9	26	82	5	82	32	19	7	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55257148--55257181	17	1.9	17	88	5	50	23	23	0	52	1.47
55266068--55266335	136	2.0	136	95	0	482	35	20	5	38	1.76
55266440--55266528	21	4.2	21	70	5	63	41	17	22	17	1.90
55266383--55266503	42	2.9	42	82	4	129	39	17	25	17	1.91
55270556--55270632	25	3.1	24	83	7	84	19	20	19	40	1.92
55276322--55276350	2	14.5	2	100	0	58	51	0	48	0	1.00
55286305--55286358	19	3.1	18	78	10	67	62	0	0	37	0.95
55288154--55288201	20	2.4	21	80	16	57	43	0	0	56	0.99
55289414--55289442	3	9.7	3	100	0	58	68	0	0	31	0.89
55289693--55289856	88	1.9	88	89	0	256	17	25	25	31	1.97
55290768--55290964	105	1.9	101	84	6	261	26	24	16	31	1.97
55297210--55297333	42	3.0	42	85	2	142	45	18	20	15	1.85
55297246--55297309	21	3.0	21	72	0	65	45	18	20	15	1.86
55297256--55297380	21	6.0	21	71	3	74	44	16	19	20	1.87
55306404--55306531	36	3.5	35	70	16	96	32	19	20	28	1.97
55306373--55306495	40	3.2	40	69	17	123	31	18	19	30	1.96
55306328--55306543	76	2.8	76	86	0	288	33	19	18	27	1.96
55321924--55321965	21	2.0	21	86	9	59	73	2	0	23	0.94
55321939--55321990	15	3.3	15	84	15	61	71	0	0	28	0.87
55323576--55323637	27	2.2	28	80	8	65	67	1	1	29	1.09
55326023--55326090	33	2.1	33	94	0	118	13	27	33	25	1.93
55329016--55329155	57	2.5	57	77	4	138	37	10	15	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55329246--55329920	138	4.9	138	79	2	629	22	18	22	36	1.95
55329246--55329920	277	2.4	275	80	3	735	22	18	22	36	1.95
55329246--55329920	69	9.8	69	79	2	566	22	18	22	36	1.95
55337094--55337208	38	3.0	38	93	0	194	26	13	4	55	1.56
55342040--55342074	18	1.9	18	88	11	54	54	2	0	42	1.15
55345084--55345133	25	2.0	26	84	4	66	34	22	26	18	1.96
55345161--55345273	25	4.5	25	78	8	122	35	20	26	17	1.95
55345116--55345257	50	2.9	50	82	5	146	37	21	24	16	1.94
55345115--55345279	50	3.3	49	80	7	140	38	20	26	15	1.92
55345710--55345754	21	2.1	22	87	4	65	28	2	0	68	1.01
55345760--55345802	22	2.0	22	86	9	61	37	6	20	34	1.80
55345997--55346145	34	4.4	34	76	11	142	19	24	12	43	1.86
55345996--55346130	69	2.0	69	85	5	184	18	24	14	42	1.87
55348923--55348967	20	2.1	23	88	12	69	13	8	8	68	1.38
55348999--55349041	21	2.0	23	81	9	54	32	11	11	44	1.77
55353729--55353763	14	2.5	14	90	0	52	51	0	5	42	1.25
55360332--55360386	12	4.5	12	84	10	67	23	21	9	45	1.80
55360497--55360601	54	1.9	54	100	0	210	26	32	2	38	1.71
55375218--55375250	16	2.1	16	100	0	66	36	6	36	21	1.78
55375489--55375523	18	2.0	17	88	5	52	54	0	0	45	0.99
55375609--55375643	18	2.0	17	88	5	52	54	0	0	45	0.99
55375469--55375764	59	5.0	57	67	15	206	48	5	2	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55375517--55375704	61	3.1	61	68	14	181	48	7	2	41	1.43
55375727--55375763	16	2.2	17	86	13	51	54	0	2	43	1.14
55375469--55375764	120	2.5	120	97	1	549	48	5	2	43	1.36
55375746--55375985	44	5.3	46	71	19	182	47	3	2	46	1.32
55375771--55375985	90	2.4	90	94	1	367	46	3	2	46	1.33
55380026--55380088	23	2.7	24	76	16	78	52	23	7	15	1.69
55380055--55380100	22	2.1	22	84	8	58	58	19	4	17	1.55
55379999--55380459	107	4.3	107	92	1	798	44	24	6	24	1.77
55380133--55380195	23	2.8	21	76	21	65	52	22	7	17	1.70
55380162--55380207	22	2.1	22	84	8	58	58	19	4	17	1.55
55380240--55380302	23	2.7	24	74	16	69	52	20	9	17	1.72
55380520--55380564	18	2.5	18	92	0	72	55	20	11	13	1.68
55382966--55383029	25	2.6	25	100	0	128	12	26	23	37	1.90
55384836--55385099	132	2.0	132	99	0	519	25	18	19	37	1.94
55388109--55388284	93	1.9	93	96	0	325	33	20	15	30	1.93
55389354--55389420	29	2.2	31	86	13	111	32	11	19	35	1.88
55389362--55389420	29	2.0	29	100	0	118	32	13	16	37	1.88
55397419--55397605	51	3.7	50	84	4	232	34	25	13	26	1.93
55397401--55397603	102	2.0	102	86	1	282	33	25	14	26	1.94
55416619--55416657	18	2.2	18	86	9	53	33	0	10	56	1.33
55417311--55417521	109	2.0	106	87	2	305	35	17	17	30	1.93
55418106--55418171	3	22.0	3	87	0	96	62	3	3	31	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55420161--55420198	18	2.3	16	86	13	51	23	0	0	76	0.79
55422162--55422195	16	2.1	17	94	5	61	41	5	17	35	1.74
55426169--55426223	24	2.3	24	90	0	83	20	34	32	12	1.90
55427106--55427857	375	2.0	372	97	0	1414	36	17	11	34	1.86
55428431--55428493	25	2.5	25	84	0	90	34	23	19	22	1.96
55429141--55429432	152	1.9	152	95	0	530	30	23	10	35	1.88
55430975--55431237	40	6.6	40	88	3	325	26	27	20	24	1.99
55436335--55436397	24	2.7	23	82	5	72	17	41	4	36	1.71
55437868--55437897	15	2.0	15	93	0	51	83	0	0	16	0.65
55438168--55438269	51	2.0	51	100	0	204	39	11	27	21	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213