genome.fa.s14.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  155  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46386027--46386100	29	2.6	29	89	4	105	25	16	32	25	1.96
46386392--46386578	40	4.7	40	80	4	166	25	20	29	24	1.99
46389936--46390412	47	10.2	47	92	3	784	31	8	30	28	1.87
46390531--46390609	38	2.1	37	83	6	97	25	17	29	27	1.98
46391960--46392240	70	4.0	70	83	1	341	24	16	28	29	1.97
46391968--46392240	140	2.0	140	86	2	388	24	16	29	29	1.97
46397953--46398008	29	1.9	29	96	0	103	42	8	17	30	1.80
46405097--46405153	26	2.2	26	84	9	73	19	28	19	33	1.96
46407777--46408164	205	1.9	205	98	0	749	34	25	10	30	1.89
46410371--46410487	44	2.7	44	79	11	141	29	28	18	23	1.98
46411217--46411250	18	1.9	17	88	5	50	67	14	2	14	1.34
46418352--46418410	23	2.5	23	78	13	59	37	1	3	57	1.25
46418974--46419007	15	2.3	15	94	0	59	17	0	17	64	1.29
46431304--46431463	44	3.7	43	78	10	168	28	21	21	28	1.98
46433223--46433266	19	2.2	20	92	4	72	31	0	4	63	1.14
46433246--46433292	23	2.0	23	83	8	58	36	2	4	57	1.30
46435798--46435910	41	2.9	40	84	9	144	53	8	4	32	1.52
46443048--46443080	14	2.3	15	89	5	50	27	12	33	27	1.92
46443159--46443245	6	14.7	6	76	15	83	79	0	19	1	0.80
46443159--46443250	28	3.6	25	83	15	125	78	0	20	1	0.82
46444326--46444489	44	3.7	44	81	3	159	29	17	21	30	1.97
46444136--46444634	235	2.1	235	89	0	764	32	16	20	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46444562--46444832	44	5.8	44	67	13	130	32	18	18	29	1.95
46444414--46444775	145	2.5	145	84	2	467	33	18	18	29	1.95
46447540--46447602	32	2.0	32	87	0	90	36	7	12	42	1.72
46451224--46451264	21	2.0	21	86	13	59	39	0	7	53	1.29
46454063--46454121	29	2.1	27	84	9	75	44	13	15	27	1.84
46454438--46454478	9	4.4	9	96	3	73	70	0	0	29	0.87
46454445--46454494	19	2.7	19	84	6	59	72	0	2	26	0.96
46461303--46461363	32	2.0	32	90	6	99	39	27	1	31	1.66
46471398--46471438	4	10.8	4	80	19	52	24	0	0	75	0.80
46472794--46472870	30	2.6	29	82	10	84	11	3	3	80	0.98
46472794--46472928	6	22.0	6	70	11	60	15	5	4	74	1.18
46476076--46476110	14	2.5	14	90	9	54	0	37	0	62	0.95
46482735--46482873	74	1.9	74	87	0	206	28	15	16	39	1.89
46490539--46490587	22	2.3	22	85	3	64	24	2	0	73	0.94
46493135--46493201	16	4.4	14	71	17	53	22	0	5	71	1.07
46514087--46514169	27	3.0	28	87	5	125	31	21	22	24	1.98
46514096--46514171	27	2.8	28	91	4	127	30	23	22	23	1.99
46514529--46514699	27	6.3	27	84	2	200	21	15	20	42	1.89
46517484--46517514	16	1.9	16	93	0	53	29	3	16	51	1.59
46518655--46518727	21	3.8	19	91	8	121	38	10	15	35	1.82
46518670--46518750	19	3.8	22	79	14	55	38	7	16	38	1.76
46518953--46518997	23	2.0	23	81	0	54	24	0	15	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46519221--46519261	3	13.3	3	89	5	64	31	2	0	65	1.05
46519533--46519560	13	2.2	13	100	0	56	25	0	0	75	0.81
46524265--46524290	13	2.0	13	100	0	52	69	0	15	15	1.20
46524295--46524351	11	5.1	11	78	22	57	77	0	21	1	0.86
46524304--46524349	14	3.4	13	87	6	65	78	0	21	0	0.76
46524302--46524349	20	2.3	20	86	10	62	79	0	20	0	0.74
46525621--46525910	44	6.7	44	91	3	453	25	18	26	29	1.98
46526114--46526314	99	2.0	100	88	0	296	32	21	20	25	1.98
46526327--46526873	44	12.6	43	71	15	326	29	20	23	27	1.99
46526371--46526576	84	2.4	87	80	10	219	27	21	25	26	1.99
46526312--46526971	217	3.0	217	91	0	1025	30	20	22	26	1.98
46527431--46527482	19	2.9	17	78	10	50	38	13	15	32	1.86
46527971--46527995	13	1.9	13	100	0	50	32	0	0	68	0.90
46534211--46534695	242	2.0	243	90	0	765	28	22	18	30	1.97
46540988--46541027	20	2.0	20	85	0	53	25	37	15	22	1.93
46542983--46543064	40	2.0	40	97	0	155	43	2	23	30	1.66
46559164--46559699	47	11.4	47	95	0	910	31	8	30	29	1.87
46559822--46559896	37	2.0	37	87	5	107	21	21	30	26	1.98
46562579--46562634	12	4.8	12	78	8	53	53	0	26	19	1.45
46562579--46562639	23	2.6	23	84	7	70	50	0	26	22	1.49
46563402--46563431	14	2.2	13	94	5	51	16	23	30	30	1.96
46564700--46564763	3	21.3	3	100	0	128	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46576246--46576338	44	2.1	46	87	4	136	36	27	4	31	1.76
46576320--46576372	16	3.3	16	89	0	79	24	32	3	39	1.73
46581936--46582197	39	6.7	40	87	7	319	25	27	22	25	2.00
46590410--46590485	29	2.6	29	91	0	116	23	21	25	30	1.99
46592231--46592269	20	2.0	20	89	0	60	7	33	20	38	1.81
46599385--46599418	16	2.1	16	88	5	50	70	2	2	23	1.15
46608826--46608947	64	1.9	64	91	0	199	28	6	23	40	1.79
46616940--46617026	36	2.4	36	96	0	156	32	24	11	32	1.91
46618609--46618647	12	3.2	12	85	0	51	17	20	5	56	1.60
46618910--46619030	50	2.4	50	79	2	127	23	28	19	28	1.98
46626336--46626393	30	1.9	30	86	13	84	0	50	0	50	1.00
46629541--46629599	29	2.0	29	96	0	109	35	11	13	38	1.82
46629349--46629791	221	2.0	221	100	0	886	38	11	13	36	1.81
46631204--46631306	52	2.0	52	94	0	179	37	15	15	31	1.89
46636975--46637094	60	2.0	60	100	0	240	20	18	15	46	1.84
46639115--46639315	29	6.8	29	80	7	217	37	13	29	19	1.90
46643003--46643117	40	2.9	39	87	3	158	13	30	20	34	1.92
46643003--46643102	20	5.0	20	70	4	76	13	33	20	34	1.90
46643815--46643851	19	1.9	19	94	0	65	24	27	29	18	1.98
46644868--46644990	42	2.9	42	86	0	165	26	20	24	28	1.99
46651297--46651501	39	5.2	39	92	0	320	31	15	21	32	1.94
46653933--46654109	43	4.1	43	81	5	198	23	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46653933--46654109	86	2.1	85	85	1	237	23	28	20	27	1.99
46654468--46654507	20	2.0	21	90	5	64	2	47	20	30	1.63
46657338--46657754	9	49.3	9	69	19	242	32	1	20	45	1.63
46657377--46657754	25	14.6	25	77	14	274	32	2	20	44	1.63
46657412--46657754	34	9.7	34	67	21	138	32	2	21	44	1.64
46657346--46657659	57	5.3	59	74	18	238	32	1	19	46	1.61
46657722--46657762	18	2.3	18	91	0	64	29	2	24	43	1.67
46657698--46657784	43	2.0	42	84	2	111	28	1	22	47	1.59
46657758--46657815	21	2.9	19	80	10	53	31	1	13	53	1.50
46657920--46657944	7	3.6	7	100	0	50	28	0	12	60	1.32
46658313--46658376	31	2.0	32	87	3	94	48	18	14	18	1.81
46658787--46658811	13	1.9	13	100	0	50	48	28	8	16	1.74
46658857--46658917	32	1.9	31	83	9	79	52	22	3	21	1.61
46659770--46659844	29	2.6	29	86	0	105	49	9	18	22	1.76
46661128--46661179	22	2.4	21	81	6	59	46	32	0	21	1.52
46661252--46661278	7	3.9	7	100	0	54	44	40	0	14	1.46
46661511--46661770	115	2.3	114	78	2	261	27	21	18	31	1.97
46670463--46670563	45	2.2	46	80	1	114	25	16	19	37	1.93
46670412--46670577	68	2.4	68	79	4	172	22	16	19	40	1.90
46670440--46670563	23	5.4	23	80	1	124	23	16	20	38	1.93
46677066--46677224	80	2.0	81	91	1	257	47	6	20	25	1.74
46682361--46682397	16	2.3	16	90	0	56	48	0	5	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46690957--46690983	4	6.8	4	100	0	54	51	0	48	0	1.00
46691246--46691275	6	5.0	6	100	0	60	83	0	0	16	0.65
46691556--46691613	27	2.2	26	81	12	64	55	0	0	44	0.99
46693461--46693514	20	2.7	20	88	5	74	24	12	27	35	1.92
46705099--46705137	20	2.0	19	90	5	60	43	0	10	46	1.37
46708908--46709004	20	4.8	20	72	5	88	15	23	13	47	1.81
46708896--46709010	40	2.9	41	85	2	144	14	23	14	46	1.82
46719001--46719060	31	1.9	31	93	0	102	21	11	25	41	1.87
46721661--46721868	53	3.9	53	81	0	245	32	12	25	28	1.93
46724374--46724412	13	3.2	13	85	7	55	23	23	30	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213