genome.fa.s14.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  117  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33465583--33465609	4	6.8	4	100	0	54	77	0	0	22	0.76
33468081--33468122	7	6.1	7	86	5	59	35	0	19	45	1.50
33468077--33468120	20	2.1	21	91	4	72	34	0	15	50	1.45
33468465--33468506	7	6.1	7	86	5	59	35	0	19	45	1.50
33468461--33468504	20	2.1	21	91	4	72	34	0	15	50	1.45
33468780--33469167	9	46.2	9	70	18	248	45	20	1	32	1.60
33468780--33469188	25	16.9	25	75	10	334	45	19	1	32	1.61
33468847--33469167	34	9.8	34	73	17	202	45	20	1	32	1.59
33469062--33469142	42	1.9	42	94	0	144	46	18	1	33	1.57
33468762--33469167	16	24.9	16	69	18	170	46	19	1	32	1.60
33470480--33470560	21	3.9	21	77	1	92	33	18	45	2	1.63
33470480--33470559	42	1.9	41	87	2	115	33	18	45	2	1.63
33470904--33471071	43	3.9	43	82	3	194	30	16	27	25	1.96
33470865--33471086	86	2.6	86	81	2	257	31	17	24	27	1.97
33472865--33472965	35	2.9	35	80	0	112	16	11	33	37	1.86
33489166--33489640	44	10.8	44	85	0	626	29	20	24	25	1.99
33489165--33489640	88	5.4	88	93	0	790	29	20	24	25	1.99
33494261--33494307	21	2.2	21	77	7	51	36	27	6	29	1.82
33494318--33494355	19	2.0	19	100	0	76	52	15	5	26	1.64
33494398--33494437	20	2.0	20	85	9	55	37	12	7	42	1.71
33495437--33495467	9	3.4	9	100	0	62	77	12	0	9	0.99
33501767--33501815	19	2.5	19	90	3	71	6	18	2	73	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33504290--33504356	23	2.9	23	86	0	80	35	5	29	28	1.81
33505099--33505164	31	2.1	31	88	0	96	28	30	12	28	1.93
33505106--33505172	31	2.2	31	83	0	80	34	26	10	28	1.90
33505439--33505497	30	2.0	30	86	6	84	32	15	20	32	1.93
33506160--33506201	18	2.3	18	92	8	68	54	4	11	28	1.57
33506155--33506193	8	4.8	8	85	14	53	61	2	10	25	1.41
33508962--33508998	17	2.2	17	100	0	74	35	27	16	21	1.94
33509530--33509654	35	3.6	35	92	0	187	26	14	16	43	1.86
33511607--33511655	21	2.3	21	85	0	71	30	46	14	8	1.73
33511798--33511856	29	2.0	29	100	0	118	23	28	27	20	1.99
33514342--33514375	9	3.8	9	84	0	50	52	23	14	8	1.69
33520064--33520101	20	1.9	20	88	0	58	39	10	13	36	1.79
33522351--33522406	29	1.9	29	82	13	71	35	19	0	44	1.51
33524621--33524680	27	2.2	28	82	8	79	36	18	25	20	1.94
33524665--33524722	27	2.1	27	81	6	64	37	13	27	20	1.91
33527858--33527907	23	2.1	23	81	7	55	62	4	18	16	1.48
33535430--33535485	18	3.2	18	76	5	60	60	1	0	37	1.07
33535629--33535686	18	3.2	18	72	20	57	56	1	0	41	1.09
33535435--33535858	200	2.1	204	88	5	623	45	5	6	42	1.54
33537259--33537313	18	2.8	20	75	13	69	27	23	21	27	1.99
33537429--33537473	22	2.1	22	91	4	74	31	22	24	22	1.99
33537435--33537482	21	2.2	22	85	3	62	41	25	16	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33537591--33537655	34	1.9	34	90	0	103	32	12	13	41	1.82
33538973--33539011	21	2.0	21	85	10	55	46	2	2	48	1.29
33539828--33539853	12	2.2	12	100	0	52	50	7	7	34	1.60
33544827--33544922	6	15.8	6	80	10	54	71	6	6	15	1.26
33544857--33544903	7	6.4	7	85	11	60	82	2	2	12	0.84
33544826--33544924	12	8.2	12	71	14	69	72	6	6	15	1.24
33544887--33544990	44	2.4	43	79	8	111	72	3	13	10	1.25
33547061--33547189	43	3.0	43	93	1	206	28	20	27	23	1.99
33547370--33547474	44	2.4	43	79	6	113	27	19	20	32	1.97
33549175--33549217	19	2.4	17	81	14	50	32	2	0	65	1.06
33550595--33550633	11	3.5	11	92	0	69	46	0	0	53	1.00
33551974--33552040	21	3.2	20	74	14	64	61	5	0	32	1.20
33566687--33566752	20	3.3	20	91	0	96	40	13	6	39	1.69
33574140--33574303	86	1.9	85	88	1	247	32	20	15	31	1.94
33575887--33575928	22	1.9	22	100	0	84	45	4	23	26	1.73
33579547--33579630	39	2.1	39	84	4	105	52	7	10	29	1.63
33581702--33581769	22	3.3	22	72	15	56	52	0	4	42	1.21
33581767--33581811	19	2.4	19	85	7	56	17	2	4	75	1.07
33582180--33582283	7	14.6	7	74	10	59	36	40	0	23	1.55
33582185--33582247	21	3.0	21	79	6	65	31	47	0	20	1.51
33582185--33582247	14	4.4	14	81	2	72	31	47	0	20	1.51
33582682--33582961	122	2.3	123	83	2	348	27	30	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33582682--33582961	41	6.9	41	85	2	348	27	30	21	21	1.98
33583005--33583080	40	1.9	40	86	0	107	21	21	22	35	1.96
33584210--33584260	8	6.0	8	84	11	66	58	3	0	37	1.16
33584187--33584263	18	4.2	18	78	13	77	57	3	1	37	1.26
33584303--33584372	22	3.2	21	78	13	70	55	0	2	41	1.14
33584325--33584389	21	3.0	21	84	11	69	50	0	3	46	1.17
33588181--33588285	44	2.4	44	95	0	192	25	28	14	31	1.95
33588485--33588633	44	3.4	44	73	1	163	27	24	14	32	1.95
33588186--33588633	133	3.4	132	67	8	332	28	24	17	29	1.97
33588492--33588667	89	2.0	89	88	0	262	26	24	18	30	1.98
33596734--33596773	20	2.0	20	100	0	80	30	15	25	30	1.95
33601367--33601409	10	4.6	9	80	8	50	74	0	11	13	1.07
33603149--33603232	20	4.4	18	71	21	55	53	4	0	41	1.22
33603469--33603579	41	2.7	41	81	2	125	40	21	18	19	1.91
33609118--33609368	40	6.3	40	89	3	319	23	19	27	29	1.98
33612620--33612779	43	3.7	43	81	5	180	26	15	28	30	1.95
33612622--33612783	86	1.9	86	88	2	245	25	16	27	30	1.96
33616785--33616853	31	2.2	31	84	0	84	28	10	11	49	1.72
33617489--33617529	19	2.1	20	90	4	66	70	4	2	21	1.18
33617482--33617532	19	2.8	17	80	16	57	70	5	1	21	1.18
33619922--33619969	19	2.6	18	83	6	51	45	2	33	18	1.61
33635377--33635404	4	7.0	4	100	0	56	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33639254--33639369	43	2.7	43	77	10	112	28	26	18	25	1.98
33645537--33645688	27	5.6	27	91	3	223	27	12	29	30	1.93
33645537--33645688	55	2.8	55	91	0	232	27	12	29	30	1.93
33667827--33667974	40	3.7	40	94	0	251	21	27	20	30	1.98
33671522--33671570	25	1.9	25	83	4	62	34	10	28	26	1.89
33671548--33671612	33	2.0	32	90	3	103	40	16	24	18	1.91
33676413--33676442	6	5.2	6	92	8	53	86	0	13	0	0.57
33676413--33676442	11	2.6	12	89	10	53	86	0	13	0	0.57
33679480--33679512	17	1.9	17	100	0	66	24	12	18	45	1.83
33685213--33685390	27	6.6	27	84	3	205	29	28	15	26	1.96
33685234--33685389	82	1.9	81	88	3	233	29	28	15	26	1.96
33687226--33687413	40	4.7	40	95	0	322	21	26	20	30	1.98
33690649--33690791	76	1.9	78	85	2	200	38	3	17	40	1.67
33691216--33691336	41	3.0	40	78	11	113	28	19	25	27	1.98
33695636--33695710	29	2.6	29	87	4	98	40	13	16	30	1.86
33698274--33698306	14	2.4	14	85	5	50	42	27	21	9	1.83
33701936--33701992	30	1.9	30	92	0	96	35	7	12	45	1.69
33706071--33706126	29	1.9	29	88	0	85	35	1	10	51	1.47
33707160--33707196	5	7.4	5	93	0	56	43	13	0	43	1.44
33707551--33707867	126	2.5	125	91	2	512	31	17	21	29	1.96
33709083--33709123	11	3.6	12	83	9	50	53	2	21	21	1.57
33709070--33709173	51	2.0	51	85	10	140	50	1	23	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33710730--33710769	18	2.2	19	90	4	64	50	0	7	42	1.30
33710378--33711081	234	2.9	230	81	10	740	39	9	5	45	1.61
33710680--33711264	248	2.3	244	80	6	620	39	9	6	45	1.62
33714826--33714899	37	2.0	37	94	0	130	24	24	4	47	1.69
33721571--33721776	84	2.4	84	86	4	259	38	12	25	23	1.90
33721602--33721772	29	5.9	29	76	5	150	39	12	26	22	1.89
33721640--33721772	59	2.3	59	85	2	178	39	9	27	22	1.85
33726377--33726423	16	3.1	16	76	17	64	19	19	21	40	1.92
33726371--33726416	13	3.3	13	77	16	56	17	13	26	43	1.85
33726989--33727165	40	4.4	40	79	9	175	25	20	26	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213