genome.fa.s14.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  184  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55438583--55438637	20	2.8	20	88	0	83	25	29	16	29	1.97
55443673--55443733	32	1.9	31	84	15	81	50	3	21	24	1.63
55445667--55445703	18	2.1	18	90	10	58	40	10	45	2	1.53
55455146--55455191	16	3.1	15	76	11	51	67	2	0	30	1.03
55459155--55459201	24	2.0	24	83	8	60	63	0	0	36	0.94
55461001--55461055	25	2.2	25	86	0	74	34	21	23	20	1.97
55461012--55461066	25	2.2	25	86	0	74	36	16	27	20	1.93
55463462--55463534	12	6.6	11	75	18	64	65	2	1	30	1.15
55463465--55463513	20	2.3	22	80	16	59	67	4	0	28	1.09
55473984--55474016	15	2.2	15	89	10	50	45	0	6	48	1.27
55480341--55480471	60	2.2	61	90	1	201	45	13	29	12	1.80
55480645--55480789	60	2.4	60	83	4	168	40	9	33	16	1.81
55480688--55480874	60	3.4	59	76	17	179	44	13	29	12	1.81
55480776--55480887	50	2.2	49	87	9	156	44	15	29	10	1.80
55484378--55484546	58	2.9	58	83	0	194	30	13	18	37	1.89
55484577--55484754	70	2.5	70	82	3	198	29	17	21	32	1.96
55484597--55485045	70	6.5	70	75	8	308	26	17	23	32	1.97
55489946--55490137	43	4.5	43	76	10	171	22	16	25	34	1.95
55489946--55490183	85	2.8	83	85	3	287	23	17	25	34	1.96
55493223--55493405	51	3.6	50	79	6	190	24	17	27	31	1.97
55493416--55493502	45	1.9	45	90	0	138	27	13	21	36	1.92
55498252--55498325	31	2.3	31	80	11	78	63	21	6	8	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55501601--55501659	30	2.0	30	100	0	118	57	8	16	16	1.63
55501767--55502011	9	27.6	9	86	2	262	64	0	35	0	0.97
55501767--55502011	6	41.3	6	88	2	262	64	0	35	0	0.97
55505647--55505714	23	3.2	23	64	20	65	45	5	17	30	1.72
55505959--55505990	3	10.7	3	100	0	64	68	0	0	31	0.90
55506862--55506913	27	2.0	26	84	3	68	13	13	55	17	1.69
55507439--55507574	43	3.2	43	64	12	107	25	23	22	28	1.99
55507435--55508067	88	7.3	88	86	3	630	24	23	23	28	2.00
55507697--55508011	44	7.2	44	67	11	162	27	25	22	24	2.00
55507743--55508055	44	7.1	43	67	13	190	25	24	24	25	2.00
55509324--55509376	5	10.8	5	82	13	58	0	15	0	84	0.61
55509323--55509375	24	2.2	25	90	6	83	0	15	0	84	0.61
55510701--55510726	13	2.0	13	100	0	52	15	23	23	38	1.92
55514169--55514208	21	1.9	21	89	0	62	57	0	2	40	1.12
55514353--55514396	12	3.5	12	76	11	52	43	0	9	47	1.35
55514662--55514692	15	2.1	15	93	0	53	77	0	0	22	0.77
55516027--55516085	25	2.4	25	85	2	75	33	23	25	16	1.96
55517265--55517296	15	2.1	15	94	0	55	68	9	6	15	1.36
55521300--55521922	114	5.5	116	75	11	490	32	19	21	26	1.97
55521378--55521921	228	2.4	226	86	2	714	32	18	21	27	1.97
55521378--55522053	228	3.0	228	82	3	644	32	19	21	27	1.97
55522816--55522851	14	2.3	17	86	13	51	55	0	2	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55525289--55525321	17	1.9	17	100	0	66	36	6	6	51	1.51
55525300--55525447	61	2.4	61	81	10	169	41	4	7	46	1.53
55525504--55525629	25	5.3	25	74	12	106	55	15	0	28	1.41
55525529--55525947	9	47.7	9	69	17	190	51	16	0	31	1.51
55525526--55525583	22	2.6	22	70	5	55	58	10	0	31	1.31
55525570--55525636	25	2.7	25	83	2	91	52	16	0	31	1.44
55525769--55525831	12	5.0	12	77	11	72	50	17	0	31	1.46
55525715--55525850	67	2.0	65	81	8	157	49	17	1	31	1.56
55525782--55525952	25	6.7	25	74	17	122	47	19	0	32	1.54
55525902--55525954	7	7.0	7	91	8	70	52	16	0	30	1.44
55525868--55525954	39	2.2	41	89	8	135	48	18	1	32	1.56
55531721--55531756	18	1.9	18	88	5	54	36	5	0	58	1.22
55531923--55532016	42	2.2	43	86	1	136	26	19	24	29	1.98
55533516--55533665	42	3.5	42	92	3	239	23	23	20	32	1.98
55542287--55542335	26	1.9	26	83	4	64	55	12	4	28	1.55
55543876--55543922	23	2.0	24	87	4	69	38	17	6	38	1.75
55554902--55554938	12	3.0	13	84	11	51	29	40	18	10	1.85
55559036--55559257	87	2.5	85	80	12	229	35	18	10	35	1.85
55559397--55559432	10	3.5	10	85	7	54	77	0	2	19	0.88
55559443--55559481	20	2.0	20	90	10	62	66	5	2	25	1.25
55559610--55559664	20	2.8	21	75	8	53	45	1	0	52	1.11
55560088--55560184	40	2.4	41	86	6	135	35	9	17	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55560087--55560158	19	3.7	19	90	7	117	34	11	16	37	1.84
55562097--55562164	23	3.0	23	74	18	79	58	4	1	35	1.27
55563321--55563345	12	2.1	12	100	0	50	16	8	0	76	1.02
55567339--55567365	12	2.2	12	100	0	54	18	29	7	44	1.77
55569435--55570016	88	6.6	88	89	0	840	24	23	26	25	2.00
55569467--55570110	264	2.4	264	85	1	763	26	21	25	26	2.00
55569590--55570399	264	3.1	264	80	2	736	27	19	25	27	1.99
55569982--55570396	89	4.7	89	81	3	453	29	14	25	29	1.95
55569985--55570396	133	3.1	133	91	0	657	30	14	25	29	1.95
55569982--55570368	44	8.8	44	83	2	454	29	14	25	30	1.95
55570743--55570807	21	3.0	21	80	15	80	32	9	18	40	1.82
55570741--55570796	21	2.8	19	87	10	85	32	10	19	37	1.86
55571163--55571237	19	3.8	19	89	6	123	36	10	17	36	1.84
55577756--55577794	17	2.4	16	84	16	53	56	0	12	30	1.37
55581596--55581642	23	2.0	22	84	15	60	36	21	0	42	1.53
55581684--55581771	45	2.0	45	88	4	133	34	25	17	23	1.96
55581779--55581919	51	2.8	51	81	4	176	34	28	14	22	1.94
55581780--55581949	51	3.3	50	76	12	148	32	28	14	24	1.94
55584913--55585002	25	3.6	25	79	4	85	31	15	28	24	1.96
55584963--55585049	24	3.6	23	78	9	93	36	20	26	16	1.93
55584963--55585059	48	2.0	48	81	2	113	37	21	25	15	1.93
55585396--55585485	25	3.6	25	79	4	85	31	15	28	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55585446--55585532	24	3.6	23	78	9	93	36	20	26	16	1.93
55584617--55586067	483	3.0	483	99	0	2857	33	18	19	28	1.95
55585446--55585542	48	2.0	48	81	2	113	37	21	25	15	1.93
55585879--55585968	25	3.6	25	79	4	85	31	15	28	24	1.96
55585929--55586015	24	3.6	23	78	9	93	36	20	26	16	1.93
55585929--55586025	48	2.0	48	81	2	113	37	21	25	15	1.93
55586208--55586271	25	2.6	25	87	0	92	45	18	21	14	1.85
55595832--55596608	44	17.8	44	68	12	329	29	21	17	32	1.96
55595725--55596437	129	5.5	129	77	7	523	29	21	17	31	1.96
55595792--55596300	217	2.3	216	87	3	725	29	20	16	33	1.95
55595757--55596610	175	4.9	174	80	6	861	29	21	17	31	1.96
55597758--55597807	16	3.3	15	86	10	57	12	2	10	76	1.11
55597770--55597827	9	6.7	9	86	13	86	10	0	10	79	0.94
55599872--55599920	19	2.5	20	80	6	57	42	12	18	26	1.85
55603743--55603894	75	2.0	75	83	0	187	46	18	2	32	1.63
55613874--55614187	46	6.8	46	91	0	457	25	16	27	29	1.97
55614334--55614461	44	2.9	44	77	5	159	28	16	26	28	1.97
55614471--55614591	44	2.8	44	85	0	152	30	20	19	28	1.97
55615984--55616035	3	18.0	3	80	4	54	26	3	1	67	1.18
55615969--55616035	18	3.3	20	75	14	66	28	5	1	64	1.26
55616281--55616316	16	2.2	16	90	0	54	38	8	2	50	1.47
55616461--55616510	24	2.1	24	96	0	91	24	6	16	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55616464--55616524	24	2.6	25	82	15	76	22	4	14	57	1.57
55618023--55618226	75	2.7	75	83	0	228	45	20	3	30	1.67
55619501--55619525	13	1.9	13	100	0	50	40	24	4	32	1.73
55621553--55621629	26	3.1	26	79	5	70	37	22	22	18	1.94
55623337--55623374	17	2.4	17	86	8	53	39	5	2	52	1.38
55623371--55623420	25	2.0	26	88	11	77	40	10	4	46	1.56
55623493--55623561	16	4.2	16	88	3	102	26	1	34	37	1.65
55623493--55623561	33	2.1	32	89	2	102	26	1	34	37	1.65
55623780--55625001	120	10.2	120	97	0	2293	47	5	2	43	1.40
55623917--55623951	18	2.0	18	94	5	63	57	0	0	42	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213