genome.fa.s14.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  131  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38335554--38335652	44	2.2	44	80	0	108	28	18	22	31	1.97
38335743--38335943	44	4.6	44	74	9	153	30	18	20	29	1.97
38335553--38336047	233	2.1	233	92	0	812	31	18	21	28	1.97
38338759--38338935	27	6.6	27	78	5	135	29	28	15	25	1.96
38338759--38338935	55	3.3	54	79	6	162	29	28	15	25	1.96
38346678--38346853	27	6.5	27	81	5	176	30	27	14	27	1.95
38347401--38347425	13	1.9	13	100	0	50	32	16	20	32	1.94
38360901--38361444	40	13.6	40	93	1	894	27	19	27	25	1.99
38368528--38369831	40	32.6	40	86	4	1663	27	18	27	26	1.98
38375901--38375995	35	2.7	34	91	4	154	17	9	30	42	1.81
38381988--38382042	25	2.2	25	83	3	76	16	29	18	36	1.92
38382117--38382186	27	2.7	25	78	8	77	17	27	21	34	1.95
38382225--38382317	25	3.7	25	76	7	82	20	24	20	34	1.96
38384709--38384737	10	2.9	10	100	0	58	72	6	10	10	1.28
38389065--38389089	6	4.2	6	100	0	50	84	0	0	16	0.63
38390321--38390357	17	2.1	18	90	5	58	29	32	10	27	1.90
38394335--38394361	14	1.9	14	100	0	54	33	37	14	14	1.88
38396113--38396150	19	2.0	20	84	5	51	34	7	2	55	1.43
38396502--38396577	36	2.1	36	83	9	93	46	0	19	34	1.51
38396530--38396587	17	3.3	17	71	17	55	39	0	24	36	1.55
38396517--38396590	36	2.0	37	94	2	132	39	0	22	37	1.55
38396578--38396617	20	2.0	21	95	5	73	37	2	25	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38396579--38396623	21	2.2	20	88	4	63	37	2	22	37	1.67
38396687--38396815	40	3.3	40	69	14	117	21	20	20	37	1.95
38396650--38396864	75	2.9	75	88	2	308	22	20	23	33	1.97
38396668--38396864	35	5.3	35	69	14	128	22	20	23	32	1.98
38409647--38409807	47	3.4	47	88	5	243	33	9	29	27	1.89
38409668--38409801	49	2.8	47	92	4	223	33	10	28	27	1.90
38409974--38410052	37	2.1	37	88	0	113	25	18	30	25	1.98
38411917--38412019	43	2.4	43	98	0	197	23	15	34	26	1.94
38412001--38412074	29	2.6	29	84	4	96	27	14	32	25	1.95
38412422--38412607	40	4.7	40	89	2	257	24	22	26	26	2.00
38415970--38416241	47	5.7	47	89	2	393	32	9	30	27	1.89
38416360--38416475	37	3.1	37	94	0	196	22	18	32	25	1.97
38419529--38419665	63	2.2	63	85	1	175	46	16	12	24	1.81
38438715--38439017	40	7.6	40	89	2	396	27	28	20	24	1.99
38445457--38445759	40	7.6	40	89	2	396	27	28	20	24	1.99
38448467--38448953	88	5.5	88	87	0	659	27	28	23	20	1.99
38448953--38449329	44	8.7	44	79	5	374	27	17	26	29	1.97
38450161--38450212	19	2.9	17	83	10	68	36	11	19	32	1.87
38450171--38450228	19	2.7	22	84	10	68	36	8	17	37	1.80
38452568--38452859	50	5.9	50	88	2	374	21	29	21	27	1.99
38453195--38453254	29	2.1	29	87	0	84	35	23	8	33	1.85
38457142--38457349	45	4.6	44	76	9	170	40	15	19	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38459134--38459201	34	2.0	34	100	0	136	29	14	20	35	1.93
38462190--38462374	79	2.3	81	82	7	218	24	22	27	25	2.00
38462190--38462374	40	4.7	40	82	6	216	24	22	27	25	2.00
38462243--38462407	79	2.1	79	82	6	192	26	20	27	25	1.99
38479546--38479589	22	2.0	22	100	0	88	27	22	13	36	1.92
38482873--38483175	78	3.8	80	84	7	363	24	26	22	27	2.00
38482873--38483175	40	7.6	41	86	7	357	24	26	22	27	2.00
38490870--38491119	39	6.3	39	92	2	360	24	27	21	26	1.99
38490870--38491172	39	7.7	40	88	5	340	24	27	21	26	1.99
38493869--38493949	40	2.0	40	85	0	108	14	40	18	25	1.89
38500549--38500580	16	2.0	16	93	0	55	25	15	0	59	1.36
38500806--38500996	51	3.8	51	75	15	207	31	26	16	25	1.96
38500804--38500988	101	1.8	102	90	3	302	32	25	17	24	1.97
38500800--38501017	101	2.1	103	80	8	259	30	26	16	26	1.96
38503714--38503762	20	2.5	19	78	15	55	44	8	8	38	1.64
38504571--38504632	31	2.0	31	96	0	115	37	14	9	38	1.79
38508933--38509127	42	4.7	41	83	11	204	30	25	15	28	1.96
38508933--38509134	84	2.4	83	83	11	227	30	25	15	28	1.96
38533120--38533155	18	2.1	18	89	5	56	13	16	0	69	1.19
38533199--38533243	22	2.0	22	83	8	56	6	13	4	75	1.15
38534279--38534329	13	4.2	12	80	16	61	27	7	3	60	1.42
38534280--38534323	22	1.9	23	90	9	72	22	6	2	68	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38538534--38538592	23	2.6	23	84	10	84	47	13	16	22	1.82
38542929--38542968	11	3.3	12	82	10	55	35	0	0	65	0.93
38553968--38554007	20	2.0	20	85	0	53	50	5	10	35	1.58
38553956--38554022	34	1.9	35	87	3	100	46	5	8	38	1.60
38555031--38555063	17	1.9	17	93	0	57	36	24	24	15	1.93
38556690--38556714	13	1.9	13	100	0	50	84	0	0	16	0.63
38558082--38558156	37	2.1	36	90	7	118	40	2	16	41	1.62
38558163--38558201	3	13.0	3	84	10	53	69	0	30	0	0.89
38558166--38558204	17	2.2	18	90	4	62	69	0	30	0	0.89
38558910--38558961	26	2.0	26	100	0	104	42	15	11	30	1.82
38559901--38559960	27	2.2	26	78	18	61	63	3	3	30	1.27
38559904--38559993	17	5.1	17	68	23	53	61	2	2	34	1.21
38559911--38560006	44	2.2	44	85	9	124	59	1	3	36	1.20
38559922--38560013	45	2.1	43	82	8	105	60	2	3	33	1.25
38560549--38560793	10	25.8	9	66	18	79	32	3	3	61	1.28
38560578--38560619	19	2.2	20	86	4	59	21	4	0	73	1.01
38560720--38560767	18	2.9	16	82	17	62	35	2	0	62	1.07
38560698--38560800	27	4.0	26	73	15	97	32	0	2	64	1.15
38560704--38560793	19	4.9	19	67	21	57	34	1	2	62	1.15
38560779--38560824	20	2.2	21	85	11	60	26	0	0	73	0.83
38562025--38562064	19	2.1	19	95	0	71	37	7	20	35	1.81
38562360--38562417	27	2.1	27	83	0	71	18	20	24	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38573193--38573217	12	2.1	12	100	0	50	24	36	24	16	1.94
38573351--38573435	9	9.4	9	81	0	98	37	25	9	27	1.87
38573361--38573435	27	2.8	27	93	0	114	37	25	9	28	1.87
38573467--38573495	6	4.8	6	100	0	58	17	0	17	65	1.27
38574972--38575041	29	2.3	29	83	9	79	28	12	10	48	1.74
38575034--38575446	203	2.0	204	97	0	774	24	15	10	49	1.76
38581894--38581932	20	2.0	20	85	10	53	43	10	10	35	1.73
38585354--38585538	40	4.7	40	80	6	207	25	27	22	25	2.00
38590891--38590955	27	2.4	27	84	0	85	29	29	18	23	1.98
38596391--38596429	14	2.8	14	88	0	60	58	0	2	38	1.12
38609230--38609298	36	1.9	36	93	0	120	24	30	13	31	1.93
38619426--38619457	11	2.6	13	90	9	50	37	12	12	37	1.81
38620654--38621041	51	7.7	50	82	5	458	29	16	24	29	1.96
38620810--38620892	26	3.2	26	65	21	66	30	13	25	31	1.93
38620654--38621048	152	2.6	152	91	1	632	29	16	24	29	1.96
38626122--38626236	55	2.1	55	95	0	203	29	4	21	44	1.72
38627622--38627758	50	2.7	50	81	0	166	29	23	26	20	1.99
38627967--38628016	20	2.5	20	81	15	68	58	4	22	16	1.55
38630782--38630852	36	2.0	36	94	0	124	35	18	25	21	1.95
38635926--38635967	20	2.1	20	90	0	66	28	9	33	28	1.88
38638649--38638696	25	1.9	25	95	0	87	29	12	18	39	1.88
38642409--38642450	6	6.7	6	84	10	57	78	2	16	2	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38650021--38650208	51	3.7	50	81	3	189	30	26	16	27	1.97
38664247--38664373	19	6.7	19	76	3	94	34	20	21	23	1.96
38664291--38664373	38	2.2	38	88	0	130	31	19	20	28	1.97
38686185--38686250	20	3.3	20	76	0	60	19	16	21	42	1.89
38686193--38686257	20	3.2	20	73	0	67	16	18	23	41	1.90
38690397--38690533	27	5.1	26	79	7	123	35	18	18	27	1.94
38698502--38699039	264	2.0	264	98	0	1040	40	10	8	40	1.71
38700292--38700384	29	3.2	29	86	6	125	37	22	15	24	1.93
38700294--38700342	16	3.2	16	66	16	50	40	22	14	22	1.90
38700317--38700371	16	3.6	16	73	14	53	38	20	18	23	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213