genome.fa.s14.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  134  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39466688--39467179	114	4.3	113	83	3	574	26	20	24	27	1.99
39466688--39467179	229	2.2	227	82	3	596	26	20	24	27	1.99
39467438--39467481	14	3.0	15	86	6	63	22	0	40	36	1.54
39467803--39467851	7	6.9	7	76	4	53	20	0	46	32	1.51
39467799--39467866	15	4.7	15	80	10	63	22	0	44	33	1.53
39467338--39468008	299	2.2	297	82	8	754	31	2	25	40	1.68
39468432--39469285	106	7.7	106	72	16	585	48	10	11	29	1.73
39468618--39468786	83	2.0	83	92	3	279	50	10	8	30	1.66
39468432--39469428	461	2.1	462	82	12	1242	47	11	11	29	1.75
39468861--39469286	107	3.9	106	86	7	520	50	10	10	28	1.70
39472145--39472409	43	6.2	43	80	1	275	27	18	27	26	1.98
39472716--39472756	21	2.0	22	85	9	59	29	14	0	56	1.39
39496870--39497054	79	2.3	81	82	7	218	24	22	28	24	1.99
39496870--39497054	40	4.7	40	82	6	216	24	22	28	24	1.99
39496923--39497077	79	2.0	79	82	7	190	26	20	27	25	1.99
39504664--39504847	40	4.6	39	82	6	194	25	22	27	25	2.00
39504664--39504847	39	4.7	40	82	8	191	25	22	27	25	2.00
39504664--39504847	79	2.3	80	83	6	223	25	22	27	25	2.00
39504717--39504880	79	2.1	78	81	5	188	26	20	28	25	1.99
39508759--39508880	50	2.5	49	87	1	163	22	14	31	30	1.94
39508975--39509106	66	2.0	66	92	2	221	41	5	28	25	1.77
39511047--39511115	35	2.0	35	88	0	102	47	0	26	26	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39511432--39511482	16	3.1	17	77	11	52	9	15	0	74	1.06
39514222--39514278	18	3.2	17	73	11	53	28	17	14	40	1.88
39526604--39526666	30	2.1	30	96	0	117	31	7	25	34	1.85
39532196--39532261	33	2.0	33	93	0	114	19	10	34	34	1.86
39538232--39538264	16	2.1	16	94	0	57	51	6	6	36	1.51
39540334--39540509	96	1.8	96	95	0	316	34	16	14	34	1.90
39547432--39547482	6	8.5	6	78	8	59	15	1	3	78	0.99
39557528--39557567	20	2.0	20	100	0	80	25	10	25	40	1.86
39562843--39562911	24	2.9	24	86	0	84	24	18	26	30	1.98
39562867--39563018	64	2.4	64	87	0	214	25	18	25	31	1.97
39571441--39571573	69	1.9	70	90	1	214	32	14	16	36	1.89
39572961--39573173	47	4.6	47	89	1	313	33	8	30	27	1.87
39575381--39575508	25	5.2	25	72	9	100	25	24	18	31	1.98
39575446--39575512	24	2.8	24	79	6	73	31	25	16	26	1.96
39577664--39577886	50	4.5	50	77	2	198	21	28	22	27	1.99
39577807--39577970	84	2.0	84	86	0	229	20	32	21	24	1.98
39577891--39577988	50	2.0	50	91	0	160	20	31	21	26	1.98
39582976--39583009	17	1.9	18	88	5	52	32	5	0	61	1.20
39594799--39594850	25	2.1	25	100	0	104	32	15	13	38	1.86
39595087--39595175	30	2.9	30	76	14	92	42	0	11	46	1.39
39595097--39595192	30	3.1	31	74	18	92	42	0	10	46	1.38
39595097--39595192	32	3.1	32	75	15	94	42	0	10	46	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39595752--39595776	9	2.8	9	100	0	50	32	0	0	68	0.90
39595791--39595821	11	2.8	11	90	0	53	67	0	0	32	0.91
39600678--39600784	24	4.3	24	71	18	85	57	2	0	39	1.13
39600678--39600822	76	1.9	73	94	4	254	58	2	0	37	1.17
39600745--39600799	24	2.3	24	81	6	67	63	3	0	32	1.12
39603275--39603405	61	2.2	57	82	5	145	48	3	5	41	1.44
39603363--39603399	17	2.2	17	85	4	58	51	0	0	48	1.00
39607549--39607726	27	6.6	27	82	3	187	26	15	29	28	1.96
39607550--39607705	82	1.9	81	85	3	215	26	15	29	28	1.96
39607546--39607726	82	2.2	81	81	2	211	27	15	28	28	1.96
39610411--39610457	20	2.4	19	86	10	60	51	0	10	38	1.37
39618088--39618112	3	8.3	3	100	0	50	32	68	0	0	0.90
39619972--39620119	72	2.0	73	89	6	230	43	11	11	33	1.77
39620103--39620295	87	2.2	88	81	4	228	47	8	7	36	1.62
39622569--39622608	16	2.4	16	87	4	53	32	0	2	65	1.06
39628654--39629072	207	2.0	207	99	0	829	32	8	7	51	1.60
39629257--39629308	15	3.2	15	73	19	50	44	0	1	53	1.11
39632067--39632091	10	2.5	10	100	0	50	56	24	12	8	1.62
39636411--39636450	18	2.3	18	82	4	55	70	2	17	10	1.27
39642904--39643081	27	6.6	27	83	3	205	26	15	28	29	1.96
39642905--39643060	82	1.9	81	88	3	233	26	15	28	29	1.96
39642901--39643081	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39650816--39650993	27	6.6	27	83	3	205	26	15	28	29	1.96
39650817--39650972	82	1.9	81	88	3	233	26	15	28	29	1.96
39650813--39650993	82	2.2	81	83	2	229	27	15	27	29	1.96
39657974--39658052	42	1.9	41	81	2	95	31	20	22	25	1.98
39658018--39658344	50	6.6	50	80	3	288	25	21	30	22	1.99
39659834--39659884	23	2.2	23	89	0	75	41	19	9	29	1.84
39660089--39660362	137	2.0	137	97	0	521	41	9	21	27	1.84
39670447--39670597	27	5.6	27	84	4	187	27	13	27	31	1.94
39670447--39670597	55	2.8	55	87	5	200	27	13	27	31	1.94
39670447--39670597	82	1.8	82	87	2	223	27	13	27	31	1.94
39674035--39674159	41	3.0	41	100	0	250	31	16	12	40	1.84
39674067--39674133	21	3.2	21	67	12	66	31	14	11	41	1.83
39686160--39686337	27	6.6	27	84	3	205	29	28	15	26	1.96
39686181--39686336	82	1.9	81	88	3	233	29	28	15	26	1.96
39688166--39688200	17	2.1	17	100	0	70	31	22	22	22	1.98
39693444--39693508	25	2.6	25	82	2	87	24	21	13	40	1.90
39693489--39693600	25	4.5	25	81	0	143	21	21	25	31	1.98
39705688--39705733	23	2.0	24	91	4	76	41	6	10	41	1.66
39709407--39709439	16	2.0	17	88	5	50	60	0	12	27	1.32
39714717--39714864	50	2.9	51	82	7	169	42	11	12	33	1.79
39719370--39719399	14	2.1	14	93	0	51	40	0	43	16	1.48
39720011--39720061	18	2.7	18	84	6	66	43	3	1	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39720155--39720201	24	1.9	25	83	12	62	40	19	8	31	1.81
39730321--39730364	22	2.0	21	83	12	54	40	0	0	59	0.98
39731146--39731210	34	1.9	34	96	0	121	44	9	20	26	1.81
39733743--39733973	102	2.3	102	87	0	336	23	17	26	32	1.97
39733876--39734074	75	2.6	76	87	4	285	22	17	27	33	1.96
39742147--39742334	50	3.8	49	81	7	218	32	26	13	28	1.93
39742147--39742334	101	1.9	101	84	4	254	32	26	13	28	1.93
39743669--39743716	22	2.3	22	85	7	64	60	8	4	27	1.44
39752499--39752531	12	2.8	12	95	0	57	12	36	33	18	1.88
39754475--39754626	27	5.6	27	91	3	223	30	28	13	27	1.94
39754475--39754626	55	2.8	55	93	0	250	30	28	13	27	1.94
39756060--39756237	27	6.6	27	83	3	187	31	28	14	25	1.94
39756081--39756236	82	1.9	81	88	3	233	30	28	14	26	1.95
39764060--39764132	27	2.7	27	89	0	101	28	35	15	20	1.93
39764089--39764238	27	5.5	27	82	6	178	27	29	16	26	1.97
39764089--39764238	82	1.8	81	85	4	212	27	29	16	26	1.97
39769967--39770102	56	2.4	57	88	2	195	29	14	22	33	1.94
39787245--39787291	22	2.1	22	96	0	85	23	10	25	40	1.87
39794720--39794991	50	5.4	49	86	4	348	22	29	20	27	1.98
39800243--39800320	29	2.7	28	78	11	86	28	14	29	28	1.95
39800273--39800600	174	1.9	174	94	0	575	30	14	24	30	1.94
39816790--39817052	39	6.6	39	87	6	313	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39824772--39825033	39	6.7	40	87	7	328	24	27	22	25	2.00
39838627--39838661	18	2.0	18	88	5	54	28	14	20	37	1.91
39839696--39839797	29	3.6	29	81	6	127	29	27	12	30	1.93
39841200--39841242	21	2.0	22	82	13	54	41	13	0	44	1.44
39841885--39841944	15	3.9	15	79	12	68	58	5	3	33	1.36
39841977--39842044	17	3.9	17	69	23	52	67	7	1	23	1.24
39845309--39845581	40	6.8	40	89	2	377	24	29	22	24	1.99
39848562--39848682	60	2.0	60	100	0	242	40	8	21	29	1.82
39850247--39850422	88	2.0	88	88	0	262	23	11	23	40	1.87
39890399--39890435	19	1.9	19	100	0	74	29	16	10	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213