genome.fa.s14.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  122  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35151785--35151852	35	1.9	35	87	0	100	44	5	22	27	1.76
35151785--35151855	16	4.2	16	77	13	63	45	5	21	28	1.74
35152144--35152186	22	2.0	22	90	0	68	67	0	0	32	0.91
35155458--35155523	20	3.3	20	75	8	80	33	16	33	16	1.92
35155426--35155583	41	3.9	41	90	1	237	33	16	29	20	1.94
35161327--35161379	26	2.0	27	85	10	74	43	1	1	52	1.23
35162189--35162231	22	1.9	23	86	13	63	46	4	4	44	1.45
35162287--35162634	173	2.0	167	84	6	441	43	9	2	44	1.49
35162803--35162949	76	1.9	75	93	1	249	38	18	17	25	1.92
35165720--35165948	112	2.0	112	100	0	458	38	16	24	21	1.93
35169858--35169907	13	4.1	12	76	20	50	30	2	0	68	1.01
35172413--35172584	79	2.2	79	84	3	220	25	21	27	25	1.99
35172360--35172582	40	5.6	39	81	8	209	25	21	27	25	1.99
35172440--35172617	79	2.2	80	80	3	191	25	21	28	24	1.99
35180350--35180521	79	2.2	79	84	3	220	25	21	27	25	1.99
35180297--35180519	40	5.6	39	81	8	209	25	21	27	25	1.99
35180377--35180554	79	2.2	80	80	3	191	25	21	28	24	1.99
35185863--35185901	8	5.0	8	93	3	62	71	0	2	25	0.98
35189705--35189751	20	2.3	20	81	0	58	29	34	12	23	1.92
35191269--35191317	24	2.0	25	84	4	64	79	2	14	4	0.97
35191253--35191307	16	3.4	16	74	18	51	78	3	14	3	1.03
35192334--35192439	48	2.2	47	85	9	135	59	1	24	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35194110--35194156	20	2.3	20	81	0	58	29	34	12	23	1.92
35196313--35196415	30	3.4	30	72	7	84	36	10	27	25	1.89
35196428--35196537	29	3.6	31	75	9	102	40	11	25	21	1.87
35201113--35201152	21	1.9	21	84	0	53	40	25	12	22	1.89
35206704--35206935	27	8.6	27	83	4	272	24	13	20	41	1.89
35206704--35206935	54	4.3	54	87	2	315	24	13	20	41	1.89
35206704--35206936	107	2.2	107	86	5	328	24	13	20	41	1.89
35211055--35211155	27	3.7	27	70	7	80	36	19	16	26	1.93
35211187--35211259	24	3.0	24	93	0	119	24	6	23	45	1.77
35211189--35211297	24	4.5	24	85	0	110	23	6	22	47	1.74
35211367--35211419	27	2.0	27	85	14	74	22	30	18	28	1.98
35211464--35211581	32	3.7	32	85	3	141	22	21	20	36	1.95
35211573--35211641	22	3.1	21	78	12	68	21	17	15	44	1.86
35212691--35212808	35	3.4	35	89	0	164	38	16	16	27	1.90
35212716--35212820	35	3.0	34	80	4	120	44	14	15	25	1.84
35212691--35212827	70	2.0	70	80	2	159	42	16	14	27	1.86
35214700--35214925	27	8.4	27	86	1	233	17	15	22	44	1.86
35214700--35214926	54	4.2	54	85	2	303	17	15	22	44	1.86
35214700--35214926	81	2.8	81	84	0	310	17	15	22	44	1.86
35217240--35217270	14	2.3	14	94	5	55	29	0	6	64	1.18
35223533--35223571	5	7.8	5	88	0	60	20	0	2	76	0.90
35232588--35232626	20	2.0	20	90	10	62	15	23	5	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35232829--35232965	49	2.8	48	80	8	143	24	24	20	29	1.99
35233031--35233097	21	3.3	21	65	23	61	47	5	8	37	1.59
35235876--35235909	14	2.2	16	90	10	54	26	2	2	67	1.19
35237361--35237398	18	2.1	18	90	0	58	28	0	13	57	1.36
35238407--35238454	10	4.7	10	84	2	51	27	0	2	70	0.98
35238429--35238456	5	5.6	5	100	0	56	17	0	0	82	0.68
35238416--35238454	15	2.6	15	87	0	51	25	0	2	71	0.98
35243993--35244079	36	2.4	36	90	1	131	39	21	16	22	1.92
35247030--35247213	51	3.6	50	84	5	235	30	27	16	25	1.97
35247030--35247272	51	4.8	51	77	6	226	31	28	15	25	1.95
35247018--35247268	101	2.5	102	84	1	290	31	27	15	26	1.95
35260952--35261064	46	2.4	47	88	2	174	20	12	22	45	1.84
35268178--35268310	50	2.7	50	83	0	167	22	29	21	27	1.99
35285919--35286010	27	3.4	27	92	1	148	29	27	14	29	1.95
35296159--35296188	16	1.9	16	93	6	53	50	20	0	30	1.49
35297228--35297298	26	2.7	26	86	4	90	25	19	29	25	1.99
35298399--35298481	10	8.2	10	75	1	76	21	24	13	40	1.89
35298412--35298462	20	2.5	20	90	0	84	19	23	17	39	1.92
35305226--35305264	10	3.9	10	82	0	51	12	30	15	41	1.85
35312493--35312664	79	2.2	79	84	3	220	25	21	27	25	1.99
35312440--35312662	40	5.6	39	81	8	209	25	21	27	25	1.99
35312520--35312697	79	2.2	80	80	3	191	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35336091--35336310	80	2.8	78	79	8	230	27	27	20	24	1.99
35336091--35336310	40	5.6	39	79	8	189	27	27	20	24	1.99
35339758--35339796	17	2.1	20	86	13	57	71	2	5	20	1.17
35345814--35345857	18	2.4	18	96	0	79	45	29	0	25	1.54
35346840--35346904	31	2.1	32	88	11	100	38	0	0	61	0.96
35346859--35346906	16	3.1	16	75	3	53	35	0	0	64	0.94
35351598--35351673	23	3.3	23	94	0	134	22	19	26	31	1.98
35351803--35351875	38	1.9	37	86	8	103	45	1	21	31	1.61
35357750--35357795	18	2.5	18	86	10	58	28	2	2	67	1.14
35360656--35360680	10	2.5	10	100	0	50	84	0	0	16	0.63
35360656--35360703	19	2.5	19	86	6	62	77	2	0	20	0.88
35360673--35360710	19	2.0	19	94	0	67	73	2	0	23	0.95
35361247--35361296	18	2.7	18	90	6	73	32	0	8	60	1.26
35367036--35367096	20	2.9	21	83	11	72	26	31	1	40	1.66
35367033--35367096	11	5.9	11	76	20	64	25	31	1	42	1.64
35367057--35367155	51	1.9	51	87	4	146	26	27	3	43	1.69
35369261--35369309	21	2.3	21	82	6	64	32	38	26	2	1.68
35369552--35370124	22	26.8	22	81	6	669	45	29	0	25	1.56
35369552--35370124	65	8.9	65	83	6	670	45	29	0	25	1.56
35369552--35370124	43	13.4	44	84	5	669	45	29	0	25	1.56
35369979--35370068	8	12.4	8	66	17	54	46	28	0	24	1.53
35373192--35373707	126	4.1	125	84	5	673	31	22	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35373191--35373747	252	2.2	251	86	3	757	31	22	15	29	1.95
35373190--35373773	126	4.6	122	80	6	553	31	22	15	30	1.95
35380537--35380592	15	3.7	15	72	6	51	25	3	7	64	1.35
35387584--35387768	40	4.7	40	87	7	236	25	27	21	25	2.00
35396410--35396682	49	5.5	49	68	12	141	31	23	22	22	1.98
35396510--35396880	49	7.5	49	70	3	224	33	23	20	22	1.97
35396398--35396929	99	5.4	99	84	4	635	32	22	21	23	1.98
35396398--35396929	198	2.7	197	89	1	816	32	22	21	23	1.98
35396947--35397128	100	1.8	99	80	8	217	31	24	21	21	1.98
35398461--35398516	15	3.7	15	72	6	51	25	3	7	64	1.35
35413836--35413875	21	1.9	21	85	10	55	10	20	2	67	1.31
35420348--35420377	15	2.0	15	93	0	51	43	6	3	46	1.46
35421186--35421230	12	3.8	12	79	2	56	40	0	0	60	0.97
35423373--35423460	45	2.0	45	93	0	149	36	0	12	51	1.40
35423383--35423485	25	4.3	25	71	12	99	38	0	12	48	1.41
35423383--35423513	70	1.9	70	98	0	253	37	0	12	49	1.41
35423390--35423529	70	2.0	70	91	2	212	38	1	13	46	1.52
35426643--35427018	124	3.0	124	94	0	653	32	23	15	27	1.95
35432685--35432774	26	3.1	29	81	15	105	51	2	2	44	1.26
35433087--35433148	29	2.2	28	85	2	79	25	12	14	46	1.80
35441567--35441594	4	7.0	4	100	0	56	25	0	0	75	0.81
35451101--35451172	37	1.9	37	97	0	135	27	11	22	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35460142--35460206	25	2.6	26	85	4	73	38	3	0	58	1.14
35460239--35460289	25	2.1	24	82	10	59	45	1	1	50	1.24
35460399--35460437	19	2.0	20	90	5	62	41	7	5	46	1.55
35460971--35461018	20	2.4	21	82	10	64	37	0	2	60	1.09
35462267--35462370	51	2.0	51	98	0	199	41	12	11	34	1.79
35464373--35464419	20	2.5	20	82	6	53	59	0	4	36	1.17
35464800--35464901	43	2.4	43	85	3	143	44	10	7	37	1.69
35467715--35467942	40	5.7	40	96	0	402	31	20	26	21	1.98
35472865--35472989	46	2.7	45	77	4	133	29	12	25	32	1.93
35476530--35476659	49	2.6	51	84	6	160	22	26	21	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213