genome.fa.s14.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  210  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62999553--62999708	63	2.5	63	96	0	294	22	19	14	43	1.87
63001478--63001503	5	5.2	5	100	0	52	61	0	0	38	0.96
63002380--63002417	20	2.0	20	94	5	69	60	0	0	39	0.97
63002425--63002458	14	2.5	13	90	4	50	79	0	0	20	0.73
63004098--63004123	4	6.5	4	100	0	52	26	0	23	50	1.50
63021874--63021920	21	2.2	22	92	3	78	21	19	38	21	1.94
63036164--63037635	768	1.9	767	92	0	2462	37	16	12	33	1.87
63045467--63045500	18	1.9	17	88	5	50	52	0	5	41	1.25
63046423--63046471	23	2.1	23	88	0	71	46	12	14	26	1.79
63049437--63049552	58	2.0	58	86	3	162	42	13	17	26	1.87
63053029--63053071	22	2.0	22	95	0	77	9	20	27	41	1.83
63053143--63053476	43	7.8	42	73	6	213	26	27	20	24	1.99
63053167--63053501	86	3.9	87	80	5	308	25	28	20	25	1.99
63053827--63053939	21	5.4	21	84	0	127	5	43	16	34	1.71
63053910--63054056	66	2.2	66	86	4	199	12	29	17	40	1.87
63053916--63054079	66	2.5	66	84	5	181	13	26	18	41	1.87
63059514--63059557	16	2.8	16	85	0	61	36	0	15	47	1.46
63059525--63059597	25	2.7	25	81	10	74	34	2	16	46	1.61
63059582--63059665	9	9.8	9	70	10	68	35	1	19	44	1.58
63059584--63059634	16	3.1	16	85	5	66	29	1	23	45	1.64
63059653--63059843	34	5.4	34	73	14	118	43	2	12	42	1.53
63059829--63059961	9	15.6	9	72	20	58	36	2	14	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63059774--63059922	79	1.9	78	82	8	185	40	2	14	42	1.59
63059853--63060212	34	11.2	34	71	18	263	40	1	11	46	1.50
63059886--63059988	22	4.9	22	68	21	76	38	1	11	47	1.51
63060002--63060118	9	12.6	9	69	21	57	37	0	10	52	1.36
63060132--63060184	16	3.3	16	79	12	56	32	1	22	43	1.64
63060135--63060181	23	2.0	23	95	0	85	31	2	21	44	1.64
63063098--63063196	7	13.0	8	69	21	61	35	46	1	17	1.55
63063124--63063195	37	1.9	38	91	2	119	36	44	1	18	1.58
63064994--63065313	41	7.8	40	82	5	295	34	24	23	16	1.95
63064993--63065313	123	2.6	120	81	6	349	34	24	23	17	1.96
63073967--63074005	4	9.8	4	94	0	69	28	0	23	48	1.51
63078368--63078418	25	2.0	25	100	0	102	41	7	11	39	1.71
63088493--63088547	26	2.1	26	89	0	83	20	10	30	38	1.87
63088501--63088558	26	2.2	26	100	0	116	20	8	29	41	1.82
63090981--63091039	21	2.8	20	80	14	57	54	3	1	40	1.27
63091006--63091066	21	3.0	20	76	9	70	59	0	1	39	1.08
63091021--63091057	10	3.4	11	88	11	58	56	0	2	40	1.13
63091471--63091504	15	2.2	16	89	5	52	70	2	0	26	1.01
63098876--63098960	27	3.1	27	64	12	75	18	14	17	49	1.80
63098854--63098963	54	2.0	54	100	0	220	19	15	20	45	1.85
63098867--63098950	27	3.2	26	64	12	71	19	11	19	50	1.78
63115795--63115854	31	2.0	31	86	3	86	53	21	1	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63116153--63116197	23	2.0	23	87	12	67	44	26	8	20	1.80
63124182--63124222	18	2.2	19	86	8	57	53	4	7	34	1.50
63135562--63135653	3	30.7	3	100	0	184	0	33	0	66	0.92
63142064--63142155	16	5.3	16	69	15	58	43	10	9	35	1.73
63142119--63142173	18	3.2	18	85	10	71	45	9	5	40	1.59
63142183--63142423	17	13.6	17	67	16	89	42	11	16	29	1.82
63142183--63142423	35	6.9	35	72	16	162	42	11	16	29	1.82
63142119--63142323	17	12.2	17	66	21	71	45	9	12	32	1.74
63142299--63142383	19	4.6	19	64	14	52	42	9	15	32	1.79
63142337--63142429	19	5.2	19	76	20	62	39	10	12	36	1.79
63142363--63142434	17	4.2	17	77	8	58	41	12	11	34	1.78
63143080--63143151	10	7.3	10	70	14	51	1	23	1	73	0.99
63143095--63143143	19	2.5	20	77	9	57	0	30	2	67	1.02
63143242--63143270	11	2.7	11	94	5	51	0	34	0	65	0.93
63155546--63155605	28	2.1	28	87	0	84	13	0	5	81	0.84
63156154--63156209	25	2.3	25	82	11	71	25	3	14	57	1.53
63156510--63156569	29	2.0	29	83	3	75	53	13	6	26	1.64
63165126--63165161	11	3.4	11	96	3	65	44	0	0	55	0.99
63180203--63180259	17	3.4	17	74	11	55	0	21	1	77	0.86
63180203--63180259	11	5.3	11	77	12	64	0	21	1	77	0.86
63191250--63191333	15	5.3	16	72	18	52	42	14	9	33	1.78
63191277--63191319	17	2.7	15	80	13	50	44	16	0	39	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63207135--63207179	7	6.6	7	79	5	56	17	13	0	68	1.20
63219712--63219901	95	2.0	95	96	0	353	38	19	15	26	1.91
63224949--63225018	15	4.7	14	72	15	52	52	5	1	40	1.34
63229225--63229254	15	2.0	15	100	0	60	53	0	6	40	1.27
63232423--63232495	18	3.9	18	84	10	85	38	1	8	52	1.40
63232425--63232495	20	3.7	19	81	14	83	36	1	8	53	1.40
63232431--63232495	19	3.4	19	87	10	89	38	1	7	52	1.40
63246785--63246841	21	2.9	20	76	7	55	43	36	5	14	1.67
63246751--63246823	27	2.7	26	77	14	76	38	34	8	19	1.81
63246815--63246852	12	3.1	13	81	11	53	50	39	0	10	1.37
63252269--63252293	3	8.3	3	100	0	50	0	0	32	68	0.90
63253073--63253108	2	18.0	2	100	0	72	0	50	0	50	1.00
63255427--63255461	11	3.3	11	96	4	63	74	0	0	25	0.82
63255421--63255472	22	2.4	21	81	15	61	67	0	0	32	0.91
63260569--63261519	195	4.9	193	78	9	702	25	7	21	45	1.79
63260632--63261518	194	4.6	192	83	5	865	26	7	22	43	1.80
63275087--63275173	21	4.1	21	79	7	95	39	24	19	17	1.92
63275087--63275173	44	2.0	41	82	6	102	39	24	19	17	1.92
63276223--63276281	30	2.0	29	83	9	75	0	23	6	69	1.12
63276234--63276306	5	14.2	5	75	13	51	4	19	4	72	1.17
63276405--63276441	3	13.0	3	83	11	51	62	0	0	37	0.96
63276405--63276478	11	6.3	11	75	14	58	54	1	0	44	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63278544--63278584	15	2.8	15	85	3	57	21	29	39	9	1.86
63283053--63283146	48	2.0	48	83	8	120	23	12	23	40	1.89
63285569--63285662	48	2.0	48	83	8	120	23	12	23	40	1.89
63288209--63288283	31	2.4	30	84	8	89	28	21	2	48	1.64
63289214--63289253	21	1.9	21	89	0	62	55	5	5	35	1.44
63300546--63300591	20	2.4	19	80	20	51	26	0	69	4	1.07
63303524--63303640	59	2.0	59	94	0	207	32	13	17	36	1.89
63303943--63303991	3	16.3	3	95	0	89	67	0	30	2	1.02
63309156--63309387	122	1.9	122	92	1	394	40	18	11	29	1.86
63311121--63311173	27	2.0	27	88	3	81	41	3	9	45	1.54
63324761--63324828	28	2.3	28	80	12	75	39	19	2	38	1.67
63327581--63327626	16	3.1	15	82	14	51	52	10	6	30	1.62
63327590--63327626	16	2.3	16	90	0	56	48	10	8	32	1.67
63331436--63331465	15	2.0	15	100	0	60	33	13	6	46	1.69
63332806--63332849	18	2.5	17	82	10	52	63	4	2	29	1.26
63334998--63335329	168	2.0	169	91	0	540	25	27	21	25	1.99
63341991--63342053	8	7.5	8	73	16	56	26	1	0	71	0.95
63341992--63342025	15	2.3	15	94	0	59	20	0	0	79	0.73
63342014--63342069	28	2.0	27	89	3	85	35	3	0	60	1.14
63343895--63343919	8	3.1	8	100	0	50	52	0	0	48	1.00
63345810--63345848	11	3.5	11	89	0	51	35	0	2	61	1.10
63345835--63345889	23	2.4	22	79	8	74	36	1	0	61	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63345835--63345889	24	2.4	23	81	6	76	36	1	0	61	1.06
63346565--63346736	91	1.9	94	89	6	271	20	12	15	50	1.77
63346638--63346836	111	1.8	109	87	4	301	22	10	15	52	1.72
63346712--63346976	137	1.9	138	83	6	347	26	12	14	46	1.81
63346854--63347149	107	2.7	105	80	9	328	25	10	12	51	1.72
63346854--63347160	111	2.9	107	80	8	322	24	10	12	51	1.71
63350203--63350402	106	1.9	106	87	6	302	24	10	13	52	1.71
63350477--63350787	111	2.8	111	87	2	423	24	12	13	49	1.76
63351013--63351701	344	2.0	344	99	0	1369	29	14	13	43	1.83
63357920--63358012	44	2.1	43	84	5	116	48	5	6	39	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213