genome.fa.s14.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  44  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11758818--11758853	17	2.1	18	89	5	56	44	0	0	55	0.99
11764744--11764897	42	3.6	42	70	13	127	29	24	17	28	1.97
11770117--11770174	30	1.9	30	89	0	89	41	3	24	31	1.71
11770386--11770417	13	2.5	13	94	0	55	31	0	12	56	1.37
11770496--11770683	50	3.6	50	89	4	259	24	22	30	21	1.99
11775607--11775639	3	11.3	3	93	6	59	0	30	0	69	0.88
11788187--11788229	18	2.4	18	88	7	61	46	0	0	53	1.00
11790232--11790296	8	7.9	8	76	6	67	67	12	4	15	1.37
11790488--11790517	13	2.4	13	94	5	53	80	0	0	20	0.72
11793384--11793792	104	3.9	103	84	2	489	28	19	22	29	1.98
11793760--11793969	69	3.0	67	83	6	231	29	17	23	30	1.97
11794818--11794847	15	2.0	15	100	0	60	66	20	6	6	1.38
11795115--11795149	15	2.4	15	90	4	54	48	0	8	42	1.33
11812373--11812436	22	3.0	22	75	6	60	39	18	28	14	1.90
11813840--11813972	58	2.3	57	83	5	160	42	0	4	51	1.27
11815699--11815763	32	2.0	32	85	5	87	18	13	6	61	1.52
11820347--11820381	16	2.1	16	89	10	52	51	0	0	48	1.00
11831624--11831668	16	2.7	18	74	22	53	37	2	0	60	1.09
11836390--11836445	23	2.4	23	85	11	78	39	1	8	50	1.44
11836396--11836445	24	2.2	24	89	7	77	38	2	8	52	1.43
11842636--11842668	6	5.8	6	96	3	52	90	9	0	0	0.44
11844910--11845033	30	4.1	30	91	1	194	25	24	5	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11844920--11845027	15	7.2	15	66	15	71	25	22	6	45	1.76
11849599--11849692	30	3.1	30	90	1	143	25	24	6	43	1.78
11849609--11849686	15	5.2	15	67	11	61	25	21	7	44	1.79
11859068--11859113	23	2.0	22	83	4	56	26	2	2	69	1.11
11859070--11859129	29	2.1	29	87	6	86	26	1	1	70	1.07
11859084--11859141	14	4.4	14	72	16	52	27	1	1	68	1.08
11859293--11859323	7	4.4	7	95	0	53	74	9	0	16	1.07
11865328--11865406	36	2.2	36	83	0	95	30	17	29	22	1.97
11866723--11866882	17	9.4	17	70	13	87	20	21	26	30	1.98
11866824--11866863	18	2.3	17	86	4	53	22	20	27	30	1.98
11870332--11870436	51	2.1	51	94	0	183	40	6	20	32	1.78
11870342--11870423	26	3.2	26	65	16	71	43	6	18	31	1.74
11878211--11878241	14	2.2	14	94	0	53	12	9	0	77	0.99
11878876--11878905	16	1.9	15	93	6	51	43	0	3	53	1.17
11886821--11886858	17	2.1	19	90	9	62	26	5	0	68	1.11
11899680--11899715	17	2.1	18	94	5	65	0	11	2	86	0.68
11900681--11900732	19	2.9	17	78	10	50	40	9	15	34	1.80
11913383--11913582	44	4.6	44	80	7	198	32	26	18	22	1.97
11936869--11936969	42	2.4	42	85	3	132	44	16	18	19	1.87
11936953--11937006	21	2.7	20	79	2	54	42	16	16	24	1.88
11942042--11942093	16	3.3	16	81	5	61	25	1	1	71	1.07
11942064--11942125	3	20.3	3	74	9	54	25	3	3	67	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11942063--11942108	22	2.1	22	87	0	65	23	4	0	71	1.03
11942949--11942979	10	3.0	10	95	4	53	22	0	0	77	0.77
11951111--11951177	34	1.9	35	87	3	100	44	14	8	31	1.76
11954500--11954540	19	2.1	20	90	4	66	34	2	2	60	1.23
11954509--11954626	28	4.3	28	73	12	77	33	2	0	62	1.14
11954533--11954594	22	2.7	23	80	9	65	35	1	0	62	1.05
11965719--11965769	22	2.2	23	89	6	77	39	5	0	54	1.24
11971013--11971096	29	3.1	29	80	12	99	76	8	5	9	1.16
11973284--11973505	87	2.5	88	81	4	261	24	23	28	22	1.99
11973299--11973508	44	4.8	44	67	7	124	22	24	29	23	1.99
11973514--11974350	131	6.3	130	78	8	777	29	20	23	25	1.99
11973418--11974222	399	2.0	400	94	0	1396	29	21	24	24	1.99
11974609--11974867	50	5.2	50	73	9	231	36	23	16	22	1.94
11974597--11974867	100	2.7	100	87	1	391	36	23	17	22	1.95
11976377--11976435	22	2.6	22	86	7	75	35	6	1	55	1.36
11979258--11979484	43	5.3	43	81	2	235	18	18	22	40	1.92
11986862--11986960	28	3.6	27	81	9	119	31	12	28	28	1.92
11987903--11988175	25	11.5	24	72	18	193	27	12	16	43	1.84
11987931--11988175	47	5.2	47	90	2	350	26	13	16	43	1.84
11987894--11988155	72	3.7	70	76	15	270	26	12	15	45	1.82
12009332--12009382	15	3.3	15	75	5	57	60	3	1	33	1.26
12013628--12013783	44	3.4	43	66	17	109	25	23	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12013567--12013833	94	2.8	94	84	2	347	26	22	17	32	1.96
12022764--12022801	20	1.9	20	94	0	67	15	36	0	47	1.46
12025660--12025686	13	2.1	13	100	0	54	55	0	7	37	1.28
12026928--12026957	15	2.0	15	93	0	51	3	13	43	40	1.60
12027150--12027187	19	2.0	20	84	5	51	63	10	2	23	1.39
12028724--12028783	30	2.0	31	83	3	77	20	38	0	41	1.52
12045195--12045500	44	7.0	44	63	15	130	32	21	23	22	1.98
12045195--12045635	132	3.4	131	86	3	557	32	21	23	22	1.98
12048875--12049203	171	1.9	171	87	2	482	26	31	17	24	1.97
12048846--12049196	85	4.1	85	86	4	456	26	31	16	25	1.97
12048880--12049223	43	8.0	43	74	7	281	28	31	16	23	1.96
12049078--12049247	85	2.0	85	79	4	182	30	29	14	25	1.95
12049595--12049662	21	3.2	21	72	0	64	8	41	16	33	1.79
12049634--12049804	66	2.6	66	83	1	200	14	26	18	40	1.88
12055234--12055325	16	5.8	16	73	13	73	34	0	19	45	1.51
12055245--12055309	25	2.7	24	88	4	96	36	0	16	46	1.48
12055271--12055709	31	13.5	32	71	20	104	38	1	13	46	1.51
12055234--12055677	9	51.3	9	67	21	120	38	1	13	46	1.51
12055295--12055386	25	3.8	26	73	21	83	35	1	18	44	1.57
12055271--12055337	16	4.2	16	83	11	84	32	0	22	44	1.53
12055340--12055719	31	12.0	31	78	14	391	39	1	11	47	1.47
12055335--12055722	62	6.1	62	82	11	509	39	1	11	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12055296--12055681	138	2.9	138	87	10	528	39	1	13	46	1.51
12055491--12055591	22	4.8	22	71	20	81	38	0	10	49	1.45
12055451--12055700	118	2.1	118	98	0	482	38	1	11	48	1.47
12055553--12055606	22	2.3	22	87	9	72	40	1	11	46	1.50
12055600--12055700	22	4.8	21	71	25	79	37	0	11	50	1.39
12060871--12060908	15	2.5	15	86	0	58	36	42	0	21	1.53
12061369--12061682	41	7.8	39	79	9	129	34	23	24	17	1.96
12061368--12061682	82	3.9	82	80	9	249	34	24	24	17	1.96
12061430--12061663	76	3.0	76	83	7	265	33	24	25	17	1.96
12061729--12061855	40	3.2	40	76	5	123	17	25	22	33	1.96
12062184--12062225	21	1.9	21	85	9	57	42	4	2	50	1.36
12062523--12062723	108	1.9	108	91	0	330	31	19	18	29	1.96
12063714--12063750	9	4.1	9	92	0	65	45	13	10	29	1.77
12063965--12064025	30	2.0	31	87	3	88	19	37	0	42	1.52
12064766--12064791	5	5.2	5	100	0	52	19	19	19	42	1.90
12068130--12068200	34	2.1	34	81	5	81	54	4	1	39	1.28
12068953--12068995	18	2.3	19	88	4	61	72	0	0	27	0.85
12069541--12069818	144	2.0	141	92	3	468	29	10	8	51	1.66
12073172--12073214	20	2.2	20	82	0	50	48	2	0	48	1.14
12076949--12076986	20	1.9	20	94	0	67	31	21	10	36	1.87
12077687--12077716	9	3.3	9	95	0	51	36	0	0	63	0.95
12083064--12083166	3	34.3	3	96	0	188	66	0	32	1	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12084456--12084480	12	2.1	12	100	0	50	24	36	24	16	1.94
12084641--12084747	9	11.4	9	86	7	151	35	32	9	22	1.86
12084640--12084747	38	2.9	37	86	9	155	36	32	9	22	1.86
12084642--12084745	29	3.7	28	91	3	156	35	33	9	21	1.86
12084755--12084852	17	5.4	17	64	13	52	51	12	3	33	1.55
12084746--12084861	37	3.2	37	95	1	198	47	12	5	34	1.64
12084902--12084960	24	2.5	24	94	0	100	30	27	0	42	1.56
12087884--12087908	8	3.1	8	100	0	50	40	0	0	60	0.97
12088013--12088092	27	3.0	27	100	0	160	60	7	11	21	1.55
12088327--12088378	20	2.7	19	76	5	68	61	17	9	11	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213