genome.fa.s14.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  141  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42148990--42149044	27	2.0	27	89	0	83	34	0	7	58	1.26
42149210--42149241	12	2.7	12	90	0	55	28	0	0	71	0.86
42149463--42149503	11	3.7	11	80	0	55	56	9	14	19	1.66
42149464--42149511	22	2.2	22	85	7	62	60	6	16	16	1.55
42149989--42150114	40	3.1	40	78	8	96	26	26	25	20	1.99
42150049--42150147	40	2.5	40	91	0	162	26	24	28	21	1.99
42162647--42162685	12	3.2	12	96	0	69	7	38	30	23	1.83
42170297--42170347	27	2.0	26	84	7	68	29	17	5	47	1.71
42172296--42172324	7	4.1	7	100	0	58	13	13	44	27	1.82
42173342--42173690	187	1.9	186	88	3	531	31	18	23	26	1.97
42173709--42173862	73	2.1	74	85	1	202	29	17	24	27	1.97
42173322--42174108	300	2.6	298	89	2	1157	32	18	23	26	1.97
42173709--42173876	74	2.3	73	83	3	194	30	18	24	26	1.98
42173798--42174124	114	2.9	113	77	6	365	31	18	23	26	1.98
42174146--42174220	16	4.5	17	93	3	127	33	0	9	57	1.31
42174146--42174220	33	2.3	33	93	4	125	33	0	9	57	1.31
42176341--42176366	3	8.7	3	100	0	52	69	0	0	30	0.89
42177355--42177401	24	2.0	24	86	0	67	48	21	4	25	1.68
42177349--42177752	9	46.0	9	74	13	308	46	20	0	31	1.58
42177360--42177727	88	4.3	88	90	7	596	46	20	0	32	1.57
42177360--42177727	166	2.2	172	90	5	588	46	20	0	32	1.57
42183196--42183266	21	3.4	21	80	7	81	33	15	43	7	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42183584--42183827	42	5.8	42	85	2	296	32	21	20	25	1.98
42183584--42183869	126	2.3	125	84	3	351	31	20	20	27	1.98
42183584--42183869	42	6.8	42	82	4	292	31	20	20	27	1.98
42190117--42190159	20	2.2	20	100	0	86	16	32	25	25	1.96
42191058--42191820	390	2.0	391	85	1	1048	21	25	19	33	1.97
42205690--42205947	39	6.6	39	84	9	273	26	20	26	25	1.99
42205690--42205947	78	3.3	78	86	6	332	26	20	26	25	1.99
42209718--42209766	25	1.9	26	91	4	82	63	10	12	14	1.53
42211830--42211881	13	3.9	13	75	5	59	36	25	7	30	1.84
42212373--42212405	16	2.1	16	100	0	66	18	12	6	63	1.48
42214113--42214215	54	1.9	54	82	4	127	55	10	1	32	1.45
42222700--42222796	27	3.3	27	79	18	122	29	32	23	13	1.93
42222662--42222794	61	2.2	60	88	7	191	31	31	23	13	1.93
42222775--42222913	43	3.5	42	74	18	161	33	28	17	20	1.95
42222818--42222946	33	3.6	33	73	18	132	34	27	20	17	1.94
42222773--42222948	76	2.3	76	98	0	334	33	28	19	18	1.96
42223283--42223340	30	1.9	30	82	0	71	32	22	6	37	1.81
42226849--42226885	19	1.9	19	88	0	56	37	8	8	45	1.63
42226941--42226983	22	2.0	22	86	9	61	30	2	16	51	1.57
42230620--42230697	37	2.1	37	85	0	102	24	30	19	25	1.98
42230816--42231105	47	6.1	47	91	3	454	28	30	8	32	1.88
42230816--42231105	96	3.0	96	91	4	453	28	30	8	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42230816--42231105	143	2.0	143	93	0	490	28	30	8	32	1.88
42248805--42248846	18	2.4	17	88	4	57	54	9	0	35	1.33
42253149--42253401	39	6.5	39	89	1	382	29	3	21	45	1.70
42270515--42270603	45	1.9	47	84	4	119	38	16	22	22	1.93
42272712--42272890	55	3.2	56	88	2	245	30	11	24	33	1.91
42272712--42272910	56	3.6	55	85	2	227	32	11	24	32	1.90
42272712--42272940	111	2.1	109	80	4	253	33	10	24	31	1.90
42274465--42274553	23	3.9	23	78	0	88	42	14	19	23	1.88
42275031--42275064	17	2.0	17	94	0	59	23	14	11	50	1.76
42280698--42280750	9	5.9	9	86	0	79	47	18	7	26	1.75
42293187--42293335	41	3.6	41	82	3	183	45	16	12	25	1.82
42293184--42293371	82	2.3	82	78	5	193	44	16	14	24	1.85
42293186--42293371	41	4.5	40	80	4	113	45	16	13	24	1.84
42305299--42305920	309	2.0	309	98	0	1208	31	20	17	30	1.96
42311326--42311590	30	8.9	30	92	1	419	30	10	19	39	1.85
42318592--42318639	10	4.5	10	78	21	53	75	4	20	0	0.97
42318592--42318642	22	2.4	21	83	9	59	76	3	19	0	0.94
42329953--42330643	138	5.1	138	85	4	924	40	7	5	45	1.57
42337155--42337969	138	5.9	138	88	1	1168	39	9	6	44	1.62
42355063--42355240	27	6.6	27	84	3	205	29	28	15	26	1.96
42355084--42355239	82	1.9	81	88	3	233	29	28	15	26	1.96
42363140--42363317	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42363161--42363316	82	1.9	81	88	3	233	29	28	15	26	1.96
42366817--42366847	10	3.1	10	95	0	53	54	0	0	45	0.99
42366801--42366845	15	3.0	15	83	6	56	46	0	0	53	1.00
42370346--42370386	21	2.0	21	85	9	57	19	0	7	73	1.07
42380013--42380204	29	6.6	29	74	9	122	22	28	11	37	1.90
42380003--42380121	59	2.0	59	87	6	170	22	27	11	37	1.89
42400611--42400648	17	2.1	18	85	14	51	5	15	0	78	0.91
42408031--42408071	21	1.9	22	85	5	57	24	2	9	63	1.37
42412225--42412492	40	6.7	40	96	0	473	30	20	27	22	1.98
42423365--42423695	40	8.3	40	95	0	583	24	20	28	26	1.99
42423727--42423883	28	5.6	27	77	8	143	21	18	29	30	1.97
42423755--42423883	29	4.5	28	78	8	118	21	17	30	31	1.96
42423723--42423911	57	3.3	57	86	2	247	22	17	30	29	1.97
42427413--42427750	48	7.0	48	93	0	577	34	6	28	31	1.82
42427891--42427993	37	2.8	37	92	0	170	24	21	31	23	1.99
42429281--42429572	40	7.3	40	92	0	458	25	20	26	27	1.99
42429604--42429760	28	5.6	27	77	8	143	21	18	29	30	1.97
42429632--42429760	29	4.5	28	78	8	118	21	17	30	31	1.96
42429600--42429788	57	3.3	57	86	2	247	22	17	30	29	1.97
42433481--42433748	40	6.7	40	95	0	464	30	20	27	22	1.98
42442043--42442310	40	6.7	40	96	0	473	30	20	27	22	1.98
42448119--42448156	17	2.3	17	86	4	51	57	0	2	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42449028--42449102	30	2.3	34	80	17	97	46	2	12	38	1.55
42449152--42449261	58	1.9	57	80	9	125	43	5	4	46	1.47
42449756--42449795	21	1.9	21	84	0	53	45	2	7	45	1.45
42449777--42449814	15	2.4	17	86	8	53	57	5	0	36	1.21
42463248--42463285	5	8.0	5	88	11	62	42	0	57	0	0.98
42463249--42463285	14	2.6	14	100	0	74	43	0	56	0	0.99
42463248--42463285	9	4.0	10	90	10	62	42	0	57	0	0.98
42467672--42467729	9	6.4	9	81	0	71	41	24	8	25	1.83
42467672--42467757	18	4.8	18	81	4	84	36	27	10	25	1.89
42467672--42467757	27	3.2	27	78	3	84	36	27	10	25	1.89
42467723--42467756	9	3.8	9	88	0	50	23	35	14	26	1.94
42472401--42472464	24	2.7	24	75	18	69	35	0	1	62	1.05
42486929--42486988	26	2.3	27	85	8	88	36	18	6	38	1.77
42489917--42489967	24	2.1	26	85	10	72	54	7	5	31	1.53
42494625--42494687	18	3.6	18	81	10	76	31	0	3	65	1.09
42494639--42494686	17	2.7	17	87	6	60	29	0	4	66	1.10
42503630--42503707	21	3.7	21	79	14	81	37	15	8	38	1.79
42505532--42505608	13	5.9	13	81	0	91	28	7	22	41	1.81
42505833--42505882	20	2.6	20	81	6	59	56	0	2	42	1.11
42510635--42510675	19	2.2	19	86	4	57	58	4	0	36	1.20
42510634--42510686	19	2.7	20	77	14	56	60	5	0	33	1.20
42510653--42510713	27	2.2	28	79	5	70	57	1	0	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42510699--42510762	10	6.5	10	77	15	71	70	1	3	25	1.11
42510654--42510721	28	2.4	28	80	2	73	60	1	0	38	1.06
42510700--42510762	19	3.2	18	81	14	72	71	1	3	23	1.09
42511230--42511279	17	2.8	18	84	9	66	68	6	0	26	1.13
42511276--42511349	22	3.4	22	71	15	64	62	1	2	33	1.18
42511422--42511492	35	2.0	35	100	0	142	46	11	5	36	1.63
42517029--42517207	33	5.4	32	71	13	110	27	27	16	28	1.97
42517027--42517242	101	2.1	101	90	0	333	27	26	17	28	1.97
42525581--42526205	47	13.2	47	93	2	1040	33	8	28	29	1.86
42526324--42526402	37	2.1	37	90	0	122	24	18	31	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213