genome.fa.s14.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  123  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35476531--35476724	50	3.9	50	79	2	149	21	27	22	28	1.99
35478872--35478896	13	1.9	13	100	0	50	44	16	0	40	1.47
35478851--35478981	46	2.9	45	81	11	160	49	11	4	34	1.59
35483235--35483469	116	2.0	116	99	0	461	34	7	8	48	1.63
35484327--35484354	9	3.1	9	100	0	56	53	0	10	35	1.36
35489120--35489209	38	2.4	38	94	1	155	30	18	12	38	1.88
35492411--35492637	42	5.4	42	76	10	176	22	16	25	35	1.95
35492408--35492637	43	5.5	41	79	9	214	23	16	25	34	1.95
35492408--35492645	85	2.8	84	90	0	350	23	17	25	34	1.96
35506998--35507092	49	1.9	49	95	0	172	34	10	13	41	1.79
35510030--35510214	40	4.7	40	81	6	189	25	27	22	24	2.00
35510030--35510212	79	2.3	81	79	8	196	25	27	22	24	2.00
35517942--35518124	79	2.3	81	82	7	214	25	27	21	25	1.99
35517923--35518126	40	5.1	40	80	8	220	25	27	22	25	2.00
35525848--35526030	79	2.3	81	82	7	214	25	27	21	25	1.99
35525829--35526032	40	5.1	40	80	8	220	25	27	22	25	2.00
35536526--35536568	22	2.0	22	86	9	61	27	4	20	46	1.71
35537597--35537630	18	2.0	16	88	11	50	11	14	2	70	1.27
35545077--35545261	79	2.3	81	85	7	245	24	22	27	25	2.00
35545078--35545261	40	4.6	40	82	9	207	25	22	27	25	2.00
35545078--35545294	79	2.7	79	81	7	201	26	22	26	24	2.00
35553026--35553210	40	4.7	40	80	7	200	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35553026--35553210	79	2.3	81	83	7	236	24	22	27	25	2.00
35553027--35553243	79	2.7	79	80	7	192	26	21	26	25	2.00
35575546--35575670	62	2.0	63	88	1	189	34	15	21	28	1.94
35584638--35584785	25	5.9	25	75	13	135	32	22	22	22	1.98
35584637--35584785	50	3.0	50	88	0	226	32	22	22	22	1.98
35590197--35590334	43	3.3	43	75	10	140	26	26	18	27	1.98
35593802--35593947	20	7.3	20	65	9	73	34	16	30	18	1.93
35593801--35593961	40	4.0	40	84	0	196	33	16	29	19	1.94
35594758--35594945	45	4.2	45	95	0	313	37	15	21	25	1.92
35595728--35595770	17	2.6	16	75	10	50	74	2	9	13	1.16
35601123--35601354	45	5.2	45	93	1	385	38	15	20	25	1.92
35616231--35616255	13	1.9	13	100	0	50	32	20	16	32	1.94
35617687--35618028	47	7.2	47	88	2	495	31	8	30	29	1.87
35617687--35618028	96	3.6	96	91	0	517	31	8	30	29	1.87
35617690--35618028	143	2.4	143	89	3	506	32	8	30	28	1.87
35618146--35618224	37	2.1	37	88	0	113	25	18	30	25	1.98
35620089--35620262	43	4.0	43	94	0	303	22	16	35	25	1.95
35620244--35620317	29	2.6	29	86	4	96	25	16	33	24	1.95
35620340--35620749	40	10.3	40	96	0	732	27	17	27	27	1.98
35620734--35620764	15	2.1	15	93	0	53	22	12	25	38	1.90
35620695--35620798	55	1.9	55	95	0	190	26	19	25	27	1.99
35620762--35620898	40	3.5	40	81	6	161	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35620654--35620844	95	2.0	94	89	3	294	26	19	27	26	1.99
35620883--35621003	40	3.0	40	80	0	143	23	19	29	27	1.98
35623444--35623468	13	1.9	13	100	0	50	32	20	16	32	1.94
35624900--35625241	47	7.2	47	88	2	495	31	8	30	29	1.87
35624900--35625241	96	3.6	96	91	0	517	31	8	30	29	1.87
35624903--35625241	143	2.4	143	89	3	506	32	8	30	28	1.87
35625359--35625437	37	2.1	37	90	0	122	24	18	31	25	1.98
35630731--35630816	25	3.5	25	79	9	95	34	18	22	24	1.96
35636966--35637023	28	2.1	28	90	0	89	29	20	24	25	1.99
35637138--35637208	26	2.7	26	88	0	97	40	22	21	15	1.90
35637159--35637236	26	3.0	27	86	3	79	37	20	23	19	1.95
35637390--35637609	54	4.1	54	85	5	286	17	15	19	46	1.84
35637390--35637609	81	2.7	81	87	2	291	17	15	19	46	1.84
35637390--35637609	27	8.1	27	84	6	250	17	15	19	46	1.84
35651280--35651312	15	2.3	15	89	5	50	39	27	0	33	1.57
35654191--35654232	21	2.0	21	85	0	57	33	0	23	42	1.55
35665151--35665201	26	2.0	26	96	0	93	9	21	37	31	1.86
35667813--35667857	24	1.9	24	86	4	65	22	2	48	26	1.62
35668963--35669022	20	3.0	20	75	4	59	33	13	31	21	1.92
35668972--35669148	40	4.6	40	81	8	213	33	16	31	18	1.93
35668972--35669148	74	2.3	76	85	5	223	33	16	31	18	1.93
35669042--35669138	20	4.8	20	64	13	56	31	18	32	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35676142--35676409	40	6.7	40	96	0	473	22	27	20	30	1.98
35690627--35690796	45	3.8	45	76	14	179	22	20	27	29	1.99
35690624--35690791	91	1.8	91	93	0	291	22	20	27	28	1.99
35693397--35693573	42	4.2	42	83	3	187	34	20	12	31	1.91
35697513--35697595	24	3.3	23	67	20	67	43	12	22	21	1.86
35697516--35697600	25	3.3	25	67	20	75	45	12	20	21	1.84
35701619--35701685	34	2.0	32	86	11	91	23	8	11	55	1.64
35703992--35704052	21	2.9	21	83	11	56	50	18	14	16	1.78
35719388--35719585	45	4.4	44	77	6	166	24	14	25	35	1.94
35723321--35723378	29	2.0	29	83	9	75	25	24	18	31	1.98
35724340--35724377	6	6.3	6	96	0	67	50	13	0	36	1.42
35728594--35728747	50	3.0	50	92	3	254	46	14	20	18	1.83
35738582--35738645	32	2.0	32	100	0	128	50	21	9	18	1.75
35738592--35738643	16	3.2	16	68	10	52	50	21	9	19	1.76
35739210--35739255	23	2.0	23	82	0	56	34	15	30	19	1.93
35748964--35749019	24	2.3	24	78	6	69	46	19	3	30	1.67
35749020--35749237	27	8.1	26	78	7	159	41	20	16	21	1.90
35749020--35749237	54	4.0	54	78	2	215	41	20	16	21	1.90
35749025--35749237	81	2.6	81	80	5	234	42	19	15	21	1.89
35766926--35766968	20	2.2	20	86	0	59	53	2	30	13	1.53
35773090--35773136	23	2.1	23	84	7	62	51	12	4	31	1.59
35780657--35780688	12	2.7	12	95	0	55	18	21	0	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35780692--35780797	6	17.7	6	67	9	56	6	17	3	71	1.23
35780694--35780811	12	10.0	12	69	19	61	8	17	3	70	1.27
35780694--35780731	14	2.7	15	88	11	55	7	18	0	73	1.06
35780692--35780793	18	5.6	18	72	10	82	6	17	3	71	1.24
35781880--35781905	11	2.4	11	100	0	52	15	0	7	76	0.99
35781980--35782008	10	2.7	11	94	5	51	6	3	6	82	0.93
35798698--35798863	64	2.6	65	73	7	160	31	7	26	34	1.84
35800950--35801107	69	2.3	69	76	3	174	37	12	11	38	1.80
35802284--35802610	124	2.6	122	83	4	381	23	25	25	25	2.00
35802284--35802614	62	5.3	61	79	6	328	22	26	25	25	2.00
35803318--35803357	21	1.9	21	84	0	53	65	0	27	7	1.20
35803321--35803382	30	2.1	30	81	6	72	67	0	24	8	1.17
35823027--35823238	40	5.3	39	82	5	255	27	28	20	23	1.99
35823027--35823238	80	2.7	80	90	0	336	27	28	20	23	1.99
35826336--35826556	27	8.3	26	79	6	140	46	17	17	18	1.84
35826344--35826554	54	3.9	53	76	10	198	46	17	18	18	1.85
35826344--35826557	81	2.7	80	79	8	220	46	17	17	18	1.85
35826882--35827019	28	5.0	28	84	2	163	23	23	21	30	1.99
35833943--35834161	27	8.1	27	84	1	233	47	18	16	17	1.84
35833943--35834175	81	2.9	80	85	1	297	45	19	15	18	1.85
35834486--35834609	28	4.4	28	84	2	151	25	22	20	32	1.98
35841402--35841453	25	2.1	26	82	13	65	30	0	23	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35843287--35843314	14	2.0	14	100	0	56	71	7	7	14	1.29
35845575--35845628	23	2.2	25	78	15	60	62	3	22	11	1.43
35851963--35852005	23	1.9	23	90	4	70	51	9	4	34	1.55
35852591--35852695	51	2.1	51	90	0	165	42	18	12	26	1.85
35855832--35855907	35	2.2	35	85	2	100	32	9	13	44	1.75
35863554--35863591	19	2.0	19	100	0	76	36	21	21	21	1.95
35864280--35864337	12	4.8	12	91	2	89	72	8	3	15	1.23
35868538--35868579	13	3.4	13	93	6	70	78	7	0	14	0.95
35868526--35868581	11	4.9	11	85	8	76	73	8	1	16	1.17
35874119--35874164	20	2.4	19	88	3	65	23	17	34	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213