genome.fa.s14.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  111  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31589971--31590126	82	1.9	81	86	3	224	26	16	28	28	1.97
31590052--31590158	27	3.9	27	81	1	70	25	16	28	28	1.97
31620060--31620319	128	2.0	128	100	0	520	30	16	20	32	1.95
31621279--31621307	14	2.0	15	93	6	51	75	10	6	6	1.17
31627779--31627978	32	6.3	32	86	0	258	36	20	20	23	1.95
31627779--31627978	96	2.1	95	89	0	301	36	20	20	23	1.95
31627972--31628037	26	2.5	26	80	0	69	36	24	19	19	1.95
31628025--31628088	27	2.4	27	84	7	78	34	23	21	20	1.97
31628152--31628207	24	2.3	24	84	0	67	50	17	7	25	1.72
31628165--31628286	24	5.1	24	75	7	104	46	18	5	29	1.71
31628304--31628405	27	3.8	27	89	0	141	21	21	22	34	1.97
31628311--31628424	27	4.2	27	85	0	93	21	22	21	35	1.96
31628419--31628502	27	3.1	28	82	3	84	23	17	16	41	1.89
31632331--31632623	50	5.8	50	88	0	424	21	31	21	25	1.98
31663570--31663715	27	5.5	26	80	7	141	15	21	19	43	1.87
31663597--31663715	54	2.2	54	87	3	168	15	21	18	45	1.85
31670666--31670785	28	4.3	28	89	1	170	32	23	23	20	1.98
31671090--31671181	27	3.4	27	83	4	98	20	19	19	40	1.92
31686547--31686708	43	3.8	42	78	6	130	32	23	17	27	1.97
31693550--31693698	43	3.6	41	79	8	140	34	26	16	22	1.95
31693672--31693724	26	2.0	26	92	0	88	28	32	18	20	1.97
31693698--31693807	41	2.7	41	89	0	166	22	22	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31693849--31693899	19	2.6	20	73	14	52	33	19	0	47	1.50
31699585--31699627	12	3.6	12	84	6	52	41	2	16	39	1.61
31704348--31704379	16	2.0	16	93	0	55	25	15	0	59	1.36
31716170--31716206	16	2.2	18	90	9	60	64	5	5	24	1.36
31718349--31718384	19	1.9	18	88	5	54	41	2	0	55	1.14
31718349--31718391	19	2.3	19	84	8	52	41	4	0	53	1.21
31723138--31723226	44	2.0	44	100	0	178	35	17	6	39	1.77
31724518--31724565	25	1.9	25	87	8	71	29	6	10	54	1.59
31730374--31730461	29	3.0	29	79	1	95	39	21	14	23	1.91
31730415--31730478	30	2.2	28	81	13	67	42	21	14	21	1.88
31749456--31749515	21	3.0	20	85	4	84	21	26	3	48	1.66
31753126--31753218	40	2.3	39	83	5	114	20	29	19	31	1.97
31768672--31768899	44	5.0	44	69	16	131	27	21	19	32	1.97
31768616--31769037	142	3.0	142	91	0	673	28	21	17	32	1.96
31768951--31769051	44	2.3	44	81	3	114	26	22	18	31	1.97
31777006--31777043	20	1.9	20	88	0	58	26	34	0	39	1.57
31783128--31783191	31	2.1	31	93	0	110	21	10	29	37	1.88
31788113--31788357	43	5.8	43	79	8	216	36	24	15	22	1.94
31788086--31788273	43	4.5	41	75	14	145	36	25	15	22	1.94
31788086--31788273	85	2.2	85	86	5	258	36	25	15	22	1.94
31788115--31788357	128	1.9	127	84	4	328	36	25	15	22	1.94
31788332--31788383	26	2.0	26	96	0	95	25	30	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31788356--31788464	40	2.7	40	95	1	200	22	22	21	33	1.97
31788506--31788556	19	2.6	20	73	14	52	33	19	0	47	1.50
31793730--31793754	11	2.3	11	100	0	50	72	0	16	12	1.13
31794934--31795174	40	6.1	39	85	2	252	23	29	15	32	1.95
31794931--31795148	80	2.7	80	87	2	305	22	30	16	31	1.95
31800724--31800776	26	2.0	26	92	0	88	18	20	33	26	1.96
31800750--31800991	85	2.8	85	90	0	358	23	15	23	36	1.93
31800753--31801115	43	8.6	43	77	9	307	25	16	22	35	1.94
31800833--31801115	128	2.2	127	87	1	399	26	17	22	33	1.96
31800750--31801107	85	4.2	84	83	5	316	25	15	23	36	1.94
31810077--31810137	27	2.3	27	86	5	81	18	13	22	45	1.83
31816029--31816112	19	4.4	18	82	8	80	38	8	17	35	1.80
31816031--31816105	19	3.8	19	91	6	123	37	9	16	37	1.80
31816032--31816094	21	3.1	21	95	4	112	38	9	14	38	1.78
31816044--31816128	21	4.0	22	79	14	81	37	7	16	38	1.76
31816094--31816138	23	2.0	23	86	4	65	33	4	15	46	1.66
31816637--31816687	25	2.0	25	82	14	61	23	0	3	72	1.01
31816730--31816808	26	2.9	27	75	9	72	32	1	5	60	1.26
31816730--31816815	22	3.4	26	73	16	74	31	1	4	62	1.23
31821058--31821090	6	5.7	6	92	7	59	84	0	15	0	0.61
31822294--31822758	176	2.6	176	85	2	614	28	15	26	30	1.96
31822294--31822757	44	10.5	45	79	5	473	28	15	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31822879--31823084	44	4.7	44	79	8	222	25	17	27	29	1.97
31823391--31823642	128	2.0	129	83	2	319	29	19	21	29	1.98
31823925--31823978	19	2.8	19	97	0	99	37	9	16	37	1.81
31824487--31824551	33	1.9	33	82	14	80	21	9	3	66	1.34
31840495--31840564	27	2.6	27	90	2	113	31	27	12	28	1.93
31848399--31848468	27	2.6	27	90	2	104	31	27	12	28	1.93
31848399--31848496	28	3.5	28	87	2	126	31	27	13	27	1.94
31861966--31862040	25	3.2	25	64	30	65	48	21	5	25	1.71
31864641--31864709	21	3.3	21	80	8	61	13	26	27	33	1.93
31865580--31865647	34	2.0	34	97	0	127	23	33	2	39	1.70
31866890--31867019	43	3.0	43	83	4	174	22	33	21	23	1.98
31866898--31867024	42	3.0	42	87	1	182	22	33	22	22	1.97
31876223--31876273	26	2.0	26	84	0	66	35	17	25	21	1.95
31876267--31876331	22	3.0	22	81	0	76	44	16	20	18	1.87
31876323--31876493	32	5.4	32	82	6	204	38	21	19	20	1.93
31876701--31877552	27	31.6	27	84	3	921	25	21	19	34	1.96
31879524--31879695	43	4.1	42	74	9	136	28	13	26	31	1.94
31882841--31883008	47	3.6	47	90	0	255	27	30	8	33	1.86
31883214--31883374	40	4.1	40	79	10	170	24	27	22	25	2.00
31901709--31901756	24	2.0	24	87	0	69	16	10	27	45	1.80
31910138--31910427	27	10.8	27	82	4	327	17	14	21	45	1.84
31919252--31919285	16	2.2	15	89	5	50	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31919942--31920000	25	2.4	24	83	13	75	37	1	1	59	1.18
31937560--31937704	72	2.0	72	97	0	272	33	28	15	22	1.94
31939845--31939876	15	2.1	15	94	0	55	15	31	3	50	1.60
31941286--31941327	22	2.1	19	86	13	57	45	2	0	52	1.13
31942921--31942958	3	12.7	3	88	0	58	65	2	31	0	1.06
31944918--31944969	10	5.0	10	79	9	50	34	1	3	59	1.27
31948083--31948117	17	2.1	16	89	5	52	42	11	25	20	1.85
31951767--31952021	54	4.7	53	78	7	271	20	16	18	43	1.88
31951767--31952022	81	3.2	80	80	9	286	20	16	18	44	1.87
31951810--31952019	109	1.9	109	85	1	287	20	17	19	43	1.88
31951767--31952018	27	9.3	26	79	7	243	20	17	19	43	1.88
31958071--31958196	30	4.2	30	75	8	121	24	28	11	35	1.90
31961014--31961041	6	4.7	6	100	0	56	17	28	0	53	1.44
31967732--31967774	18	2.4	18	88	0	59	41	44	2	11	1.53
31967879--31967929	9	5.7	9	80	0	57	29	9	15	45	1.79
31967872--31967929	18	3.2	18	73	4	55	31	10	15	43	1.80
31973286--31973458	26	6.7	26	81	6	172	39	19	13	27	1.89
31973286--31973458	52	3.3	51	83	7	208	39	19	13	27	1.89
31973286--31973458	78	2.2	78	86	0	229	39	19	13	27	1.89
31973865--31973943	33	2.6	28	80	9	77	21	24	25	29	1.99
31984867--31984904	13	3.0	13	84	3	51	81	2	15	0	0.80
31995701--31995761	31	2.0	30	84	9	79	36	14	6	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31995905--31995954	25	2.0	25	84	7	66	24	18	24	34	1.96
31996377--31996418	22	1.9	23	90	9	70	47	14	0	38	1.44
32010521--32010568	21	2.2	23	85	7	64	58	6	0	35	1.23
32010606--32010655	20	2.5	21	83	9	68	46	4	0	50	1.20
32018881--32018921	22	1.9	21	85	5	55	36	31	0	31	1.58
32019555--32019593	19	2.1	19	85	0	51	38	2	0	58	1.12
32025127--32025274	72	2.0	73	92	1	244	40	11	14	33	1.82
32027236--32027279	22	2.0	22	95	4	81	40	9	18	31	1.81
32034343--32034412	34	2.1	34	100	0	140	37	24	11	27	1.89
32040460--32040729	130	2.1	130	91	2	436	29	12	12	45	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213