genome.fa.s14.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  46  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12358829--12358892	29	2.2	29	78	10	69	28	0	7	64	1.21
12358957--12359063	10	10.9	10	70	15	71	27	2	3	66	1.22
12364449--12364482	17	1.9	18	88	5	52	50	8	5	35	1.58
12365511--12365579	24	2.9	24	73	0	66	20	21	18	39	1.93
12365539--12365578	18	2.2	18	86	0	53	20	25	15	40	1.90
12365605--12365660	24	2.3	24	81	0	67	37	8	16	37	1.80
12368123--12368147	12	2.1	12	100	0	50	0	16	0	84	0.63
12368695--12368772	41	1.9	41	91	0	129	16	15	34	33	1.90
12368753--12368808	29	1.9	29	85	0	76	14	21	35	28	1.92
12373011--12373053	18	2.5	17	85	10	61	25	11	20	41	1.86
12388078--12388155	40	2.0	40	82	10	97	52	2	0	44	1.14
12393139--12393255	44	2.7	42	79	13	130	24	19	28	27	1.99
12393141--12393255	43	2.6	44	79	14	121	25	19	27	27	1.98
12394763--12394953	23	8.2	23	80	4	195	28	12	16	42	1.84
12394751--12394953	46	4.4	46	87	1	298	28	12	16	42	1.84
12394752--12394953	93	2.2	93	89	0	305	28	12	16	42	1.85
12396038--12396086	24	2.0	25	88	4	73	36	2	10	51	1.48
12400428--12400485	27	2.1	27	81	12	66	46	15	18	18	1.84
12405889--12405948	30	2.0	30	86	0	84	21	10	16	51	1.73
12406255--12406327	33	2.2	33	81	11	89	46	15	8	30	1.74
12411242--12411328	3	29.0	3	80	9	88	28	4	3	63	1.31
12412559--12412627	30	2.2	31	87	5	95	33	31	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12435329--12435360	2	15.5	2	93	6	55	46	0	3	50	1.17
12437842--12437927	42	2.0	42	100	0	172	53	9	2	34	1.46
12439748--12439789	18	2.5	18	88	11	63	26	0	4	69	1.08
12440010--12440069	32	1.9	31	82	3	75	28	8	23	40	1.83
12444532--12444614	5	15.8	5	71	9	58	34	18	2	44	1.63
12444543--12444599	22	2.6	22	82	0	78	35	17	1	45	1.59
12444532--12444614	15	5.6	15	72	13	73	34	18	2	44	1.63
12448147--12448199	27	2.0	27	81	7	63	24	9	1	64	1.34
12448335--12448415	9	9.4	9	71	22	50	29	1	2	66	1.12
12448027--12448473	244	1.8	248	82	9	581	31	9	7	51	1.61
12453591--12453662	17	4.1	16	82	13	81	16	2	6	73	1.17
12453590--12453633	21	2.2	20	88	12	63	15	0	4	79	0.89
12461921--12462487	125	4.5	124	86	3	744	29	16	23	30	1.96
12463658--12464111	22	21.0	22	82	5	525	24	0	29	45	1.60
12463658--12464111	43	10.5	43	82	5	531	24	0	29	45	1.60
12463658--12464111	65	7.0	64	83	5	531	24	0	29	45	1.60
12464404--12464450	21	2.2	21	85	7	60	10	19	31	38	1.86
12465352--12465377	7	3.7	7	100	0	52	57	15	0	26	1.38
12465546--12465583	20	1.9	20	84	10	51	55	10	2	31	1.48
12466582--12466636	11	4.9	11	73	20	51	43	1	27	27	1.65
12466582--12466636	22	2.5	22	80	16	60	43	1	27	27	1.65
12480095--12480152	22	2.5	23	83	8	73	41	1	1	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12493961--12494041	40	2.0	41	85	2	110	30	25	19	23	1.98
12501049--12501862	265	3.1	261	88	5	1147	29	14	12	43	1.83
12503157--12503200	19	2.4	19	85	7	56	52	2	0	45	1.13
12505963--12506006	20	2.2	20	84	8	54	72	9	2	15	1.19
12508073--12508187	44	2.6	45	87	2	153	27	26	20	24	1.99
12508457--12508925	45	10.4	45	83	4	518	30	24	16	29	1.96
12508475--12508925	135	3.3	135	85	2	584	30	23	16	29	1.96
12512651--12512684	18	1.9	17	88	5	50	23	0	8	67	1.18
12528468--12528512	14	3.1	14	78	12	54	51	6	4	37	1.49
12530232--12530521	130	2.2	130	82	3	343	26	24	20	27	1.99
12530526--12530706	99	1.8	99	86	4	267	27	24	18	29	1.98
12536008--12536082	37	2.0	37	100	0	150	32	25	21	21	1.98
12537521--12537545	9	2.8	9	100	0	50	60	0	8	32	1.26
12547240--12547265	8	3.2	8	100	0	52	26	11	15	46	1.80
12550202--12550239	15	2.6	14	88	8	58	63	0	0	36	0.95
12554521--12554550	6	4.8	6	95	4	51	33	0	16	50	1.46
12555664--12555724	29	2.2	28	85	11	81	77	1	14	6	1.05
12556254--12556292	20	2.0	21	90	10	64	35	0	2	61	1.10
12558257--12558298	21	2.0	21	90	0	66	23	26	26	23	2.00
12562619--12562658	20	2.0	20	90	0	62	30	5	15	50	1.65
12564021--12564081	32	1.9	32	93	0	104	47	18	4	29	1.69
12564021--12564094	32	2.5	30	85	10	91	48	18	4	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12564054--12564107	27	2.0	27	85	7	74	51	18	3	25	1.62
12569108--12569346	30	8.0	30	78	7	211	29	14	17	38	1.89
12569117--12569346	60	3.8	60	77	6	250	29	14	18	37	1.91
12569119--12569346	90	2.5	90	79	2	233	29	14	17	37	1.91
12570136--12570176	19	2.1	20	90	4	66	48	2	2	46	1.28
12570687--12570834	71	2.1	70	92	2	244	52	6	12	29	1.63
12573130--12573205	22	3.5	21	71	8	62	28	10	21	39	1.86
12575106--12575136	15	2.1	15	100	0	62	48	6	6	38	1.55
12586083--12586114	15	2.1	15	94	0	55	34	18	3	43	1.66
12586520--12586556	16	2.2	17	90	4	58	27	0	2	70	1.01
12589722--12590099	126	3.0	126	86	0	533	38	15	17	28	1.90
12593623--12593665	18	2.4	18	92	0	68	41	9	27	20	1.83
12595386--12595452	32	2.1	32	83	10	84	40	1	20	37	1.62
12598199--12598230	16	2.0	16	100	0	64	43	18	12	25	1.85
12601951--12602007	20	2.8	21	78	7	64	73	3	8	14	1.20
12602829--12603086	132	2.0	132	87	0	372	23	24	21	30	1.99
12603187--12603898	44	16.6	44	70	13	312	27	21	19	30	1.98
12603165--12603508	129	2.7	129	92	0	555	28	21	19	31	1.97
12603360--12603849	85	5.8	85	77	8	351	27	21	20	30	1.98
12603418--12603552	41	3.2	41	70	17	132	30	20	20	28	1.98
12603178--12603820	129	5.0	128	78	9	474	27	21	19	31	1.97
12605288--12605321	13	2.5	14	90	4	52	11	14	2	70	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12605288--12605321	7	5.0	7	85	7	52	11	14	2	70	1.27
12606156--12606189	14	2.3	15	90	5	52	0	23	0	76	0.79
12606157--12606221	20	3.2	20	72	14	60	3	13	3	80	0.96
12606212--12606244	6	5.7	6	92	3	50	3	9	15	72	1.21
12612106--12612161	20	2.8	20	76	15	53	73	3	8	14	1.21
12612780--12612836	22	2.6	22	85	0	69	47	10	19	22	1.80
12613083--12613112	16	1.9	16	93	6	53	43	13	13	30	1.82
12622303--12622363	22	2.9	22	88	9	83	49	18	4	27	1.68
12644883--12644924	12	3.6	12	78	15	52	21	23	0	54	1.44
12649513--12649550	20	1.9	20	84	10	51	57	5	5	31	1.43
12649616--12649649	10	3.2	10	84	15	50	38	0	11	50	1.39
12649612--12649640	14	2.1	14	100	0	58	34	0	13	51	1.42
12649748--12649802	3	18.7	3	90	3	76	63	1	3	30	1.22
12670528--12670563	15	2.4	15	95	0	63	61	13	0	25	1.33
12678423--12678447	12	2.1	12	100	0	50	68	8	0	24	1.16
12678584--12678625	20	2.1	20	86	0	57	47	0	7	45	1.30
12691450--12691705	54	4.7	54	72	10	200	32	15	25	26	1.96
12691498--12691714	27	8.0	27	77	9	160	31	16	24	27	1.96
12691450--12691721	81	3.3	81	75	9	264	31	15	25	27	1.96
12692800--12692875	9	8.4	9	85	5	91	27	7	19	44	1.78
12692800--12692876	27	2.9	27	82	3	102	27	7	19	45	1.77
12693597--12693688	46	2.0	46	93	4	161	26	4	30	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12693597--12693705	46	2.5	44	85	11	147	28	3	31	36	1.75
12693848--12694092	122	2.1	109	82	10	285	53	4	1	41	1.28
12693949--12694003	18	3.4	17	82	14	55	54	0	0	45	0.99
12693946--12694009	28	2.4	28	89	5	96	57	0	0	42	0.98
12696636--12696677	22	1.9	22	95	0	75	57	16	4	21	1.58
12696885--12696945	25	2.5	25	94	2	106	42	19	8	29	1.80
12698542--12698582	12	3.4	12	100	0	82	24	0	0	75	0.80
12705922--12705959	20	2.0	20	84	5	51	2	21	0	76	0.91
12706556--12706661	44	2.4	44	76	6	108	33	22	17	26	1.96
12706845--12707110	87	3.1	86	90	0	397	24	22	22	31	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213