genome.fa.s14.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  107  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30362049--30362166	41	2.9	41	93	1	191	24	22	25	27	1.99
30362547--30362577	14	2.1	15	94	5	55	32	0	35	32	1.58
30362599--30362650	14	3.7	14	86	0	59	26	0	36	36	1.57
30362599--30362663	7	9.3	7	73	6	51	26	0	36	36	1.57
30363247--30363280	17	1.9	17	88	5	50	73	2	2	20	1.09
30363739--30363905	76	2.2	76	92	0	271	46	13	8	30	1.74
30363803--30364135	115	2.9	116	94	1	589	43	14	12	29	1.82
30364029--30364210	76	2.4	76	95	0	321	44	13	10	31	1.77
30363915--30364399	191	2.5	191	95	0	873	43	13	11	31	1.79
30364105--30364326	115	1.9	116	93	0	383	44	13	11	29	1.80
30363725--30364326	306	2.0	307	93	1	1030	44	13	11	30	1.80
30364220--30364489	76	3.5	76	91	0	441	46	12	7	33	1.69
30364523--30364570	22	2.4	19	83	13	60	25	47	0	27	1.52
30368814--30369060	43	5.8	42	87	1	314	24	17	30	27	1.97
30368814--30369060	129	1.9	128	86	2	352	24	17	30	27	1.97
30376785--30376834	17	3.0	16	82	8	55	24	10	26	40	1.86
30376808--30376861	17	3.2	17	81	0	63	22	5	24	48	1.72
30377975--30378040	33	2.0	33	93	0	114	22	22	10	43	1.84
30378347--30378445	27	3.7	27	74	8	103	21	19	13	46	1.83
30378491--30378577	26	3.3	26	76	7	86	21	26	11	40	1.87
30383762--30383828	33	2.0	33	97	0	125	35	4	16	43	1.68
30385246--30385347	53	1.9	53	82	4	125	26	24	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30385437--30385485	22	2.3	22	85	3	73	20	12	6	61	1.52
30390851--30391030	90	2.0	90	98	0	351	32	21	18	26	1.97
30391985--30392044	15	4.1	14	75	12	57	15	5	1	78	1.00
30392004--30392035	17	1.9	16	93	6	55	18	0	0	81	0.70
30393013--30393104	42	2.2	43	82	2	105	32	7	6	53	1.55
30395182--30395248	30	2.2	30	84	10	84	31	14	2	50	1.58
30396703--30396822	64	1.9	64	89	0	186	47	10	12	30	1.74
30397048--30397180	62	2.2	62	81	8	148	42	11	4	41	1.61
30415916--30415958	17	2.5	17	80	0	50	23	4	4	67	1.28
30416414--30416472	9	6.6	9	82	7	75	45	20	8	25	1.79
30416414--30416472	27	2.2	27	90	0	91	45	20	8	25	1.79
30417124--30417163	16	2.5	16	88	11	64	42	7	22	27	1.80
30419375--30419410	17	2.1	17	100	0	72	11	11	11	66	1.45
30419738--30419802	33	2.0	34	87	6	98	46	16	4	32	1.68
30420672--30420763	23	4.1	21	86	8	80	18	6	21	53	1.67
30420703--30420778	23	3.3	23	96	0	143	21	7	26	44	1.79
30421972--30422071	25	4.0	25	79	18	120	49	8	8	35	1.62
30421965--30422096	48	2.8	48	93	3	216	49	7	6	36	1.58
30425553--30425761	92	2.3	91	85	5	269	45	3	4	46	1.39
30425689--30425736	26	1.9	25	84	16	64	45	0	2	52	1.12
30425815--30426025	66	3.4	63	69	21	192	41	3	6	48	1.44
30425777--30426069	120	2.4	120	94	3	502	42	2	4	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30425902--30425953	15	3.6	15	80	12	56	44	0	1	53	1.11
30426031--30426072	15	2.7	16	82	14	52	45	0	2	52	1.13
30426022--30426063	15	2.9	15	82	10	52	47	0	0	52	1.00
30426006--30426322	157	2.0	157	96	0	580	47	5	3	44	1.42
30426175--30426209	18	2.0	17	88	5	52	45	0	0	54	0.99
30428694--30428743	4	12.8	4	80	4	57	26	30	0	44	1.55
30430282--30430333	27	1.9	27	88	0	77	34	19	17	28	1.94
30433951--30433997	21	2.2	22	84	3	60	27	8	17	46	1.76
30445227--30445270	11	3.9	11	82	5	52	34	0	2	63	1.07
30448798--30449020	40	5.6	40	96	0	365	21	28	22	26	1.99
30453935--30453997	29	2.2	29	82	5	74	17	20	33	28	1.95
30457282--30457306	12	2.1	12	100	0	50	24	16	0	60	1.36
30457944--30458039	29	3.3	29	88	0	129	34	11	25	29	1.91
30458029--30458114	29	3.0	28	89	6	111	39	17	24	18	1.92
30463576--30463798	80	2.8	79	82	3	232	24	21	28	26	1.99
30463629--30463798	40	4.3	40	90	0	234	23	21	28	26	1.99
30463651--30463833	79	2.3	80	82	1	226	25	20	28	25	1.99
30470009--30470213	93	2.2	91	87	6	279	44	4	4	46	1.43
30470191--30470289	52	2.0	52	80	11	118	45	6	2	46	1.39
30470246--30470279	17	2.0	17	94	0	59	44	5	0	50	1.26
30470251--30470298	17	3.0	16	79	17	55	45	6	2	45	1.40
30470295--30470473	54	3.1	54	65	22	137	41	2	7	49	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30470291--30470478	61	3.1	61	68	14	190	41	2	6	49	1.41
30470339--30470373	18	2.0	17	88	5	52	40	0	0	60	0.97
30470288--30470510	120	1.9	120	97	0	419	42	2	6	49	1.40
30470459--30470493	18	2.0	17	88	5	52	45	0	0	54	0.99
30470322--30470507	54	3.2	54	66	21	142	43	1	4	50	1.33
30470447--30470718	144	1.9	147	94	3	487	47	2	3	46	1.34
30470603--30470637	18	2.0	17	88	5	52	45	0	0	54	0.99
30470799--30470893	45	2.1	45	88	1	138	32	27	5	34	1.79
30470872--30470904	16	2.1	16	94	0	57	30	36	0	33	1.58
30470885--30470927	21	2.0	21	95	0	77	34	37	0	27	1.57
30473855--30474077	80	2.8	79	82	3	232	24	21	28	26	1.99
30473908--30474077	40	4.3	40	90	0	234	23	21	28	26	1.99
30473930--30474112	79	2.3	80	82	1	226	25	20	28	25	1.99
30486281--30486467	29	6.4	29	77	6	173	34	12	26	26	1.92
30486274--30486436	87	1.9	87	88	2	247	34	14	25	24	1.94
30486274--30486496	87	2.6	87	82	4	245	35	13	25	25	1.93
30486281--30486506	116	1.9	116	89	0	344	34	13	26	24	1.93
30486331--30486497	58	2.9	57	72	7	167	35	13	26	24	1.92
30488554--30488603	25	2.0	25	96	0	91	38	12	10	40	1.76
30491376--30491433	29	2.0	29	89	0	89	17	24	15	43	1.87
30492619--30492667	20	2.5	19	78	12	55	18	24	4	53	1.62
30492977--30493101	56	2.4	52	82	9	139	24	28	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30500313--30500361	20	2.5	20	81	15	66	12	24	6	57	1.58
30500651--30500755	50	2.1	50	83	3	131	17	29	24	28	1.97
30504016--30504156	63	2.2	63	83	0	165	27	26	22	22	1.99
30515904--30515978	29	2.5	30	84	4	107	21	26	12	40	1.88
30515904--30515989	29	2.9	29	84	3	100	20	25	15	38	1.92
30517386--30517416	15	2.1	15	93	0	53	32	9	0	58	1.31
30517692--30517752	23	2.7	23	75	12	63	34	13	0	52	1.40
30517830--30517885	26	2.1	27	80	9	62	35	8	1	53	1.43
30518180--30518589	106	3.9	107	89	1	610	30	19	18	31	1.95
30523079--30523124	12	3.8	12	97	0	83	43	41	13	2	1.55
30530007--30530714	132	5.4	132	87	3	630	27	15	26	29	1.96
30530169--30530714	175	3.1	175	87	2	722	27	15	27	29	1.96
30530043--30530753	307	2.3	307	94	0	1244	27	16	26	29	1.96
30530010--30530753	44	17.0	43	71	14	341	27	15	26	29	1.96
30532738--30532799	23	2.7	23	75	7	63	33	12	0	53	1.39
30533191--30533600	107	3.9	107	90	0	619	31	18	18	31	1.95
30541578--30541653	40	1.9	40	86	0	107	30	14	25	30	1.95
30541787--30541844	28	2.1	28	86	0	80	22	13	31	32	1.93
30541818--30542004	41	4.6	40	89	7	252	20	20	27	31	1.98
30541817--30542004	82	2.3	81	88	4	288	20	20	28	30	1.98
30542383--30542438	21	2.6	22	77	2	60	21	3	33	41	1.70
30542604--30542646	22	2.0	22	85	0	59	20	4	32	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30542648--30542678	16	1.9	16	100	0	62	22	0	45	32	1.53
30542627--30542717	7	12.6	7	72	15	60	21	0	38	39	1.54
30542231--30542804	242	2.3	248	88	5	824	31	2	21	44	1.67
30545110--30545297	43	4.3	43	89	3	288	24	28	19	28	1.98
30547396--30547424	14	2.0	15	93	6	51	34	48	0	17	1.47
30548293--30548382	41	2.2	42	79	2	101	27	26	20	25	1.99
30549151--30549401	86	2.9	86	81	7	267	33	9	15	41	1.80
30549371--30549496	40	3.2	40	80	5	112	29	6	15	49	1.69
30551516--30551825	43	7.2	43	81	6	274	25	18	26	28	1.98
30551516--30551813	129	2.3	129	80	7	320	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213