genome.fa.s14.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  151  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45221095--45221199	51	2.1	50	90	1	165	43	19	10	26	1.83
45221457--45221908	227	2.0	227	96	0	823	33	19	23	23	1.97
45233531--45233569	21	1.9	21	84	5	53	64	0	5	30	1.15
45234105--45234163	25	2.3	26	83	11	70	54	3	18	23	1.59
45236064--45236120	25	2.3	25	90	0	96	50	7	17	24	1.70
45236268--45236298	13	2.4	13	94	0	53	67	3	9	19	1.33
45238852--45238905	25	2.2	25	86	0	72	37	14	18	29	1.91
45238869--45238924	25	2.2	25	80	0	67	32	23	17	26	1.97
45241595--45241629	18	1.9	18	88	0	52	82	0	11	5	0.82
45242749--45242825	30	2.6	28	78	11	82	25	27	23	23	2.00
45245383--45245409	14	1.9	14	100	0	54	74	0	7	18	1.05
45246632--45246697	27	2.5	27	81	16	77	43	1	18	36	1.59
45246614--45246736	13	9.4	13	71	15	92	42	0	17	39	1.55
45259667--45259709	22	2.0	22	85	0	59	32	23	9	34	1.87
45276856--45276925	25	2.8	25	86	0	104	21	22	21	34	1.97
45283190--45283221	15	2.1	16	88	11	50	34	12	9	43	1.75
45283219--45283258	20	2.0	20	90	0	62	27	10	12	50	1.72
45283204--45283270	34	1.9	35	90	3	109	31	8	13	46	1.74
45283198--45283274	14	5.0	15	71	20	52	33	9	14	42	1.77
45284297--45284394	40	2.5	40	87	0	133	27	16	18	37	1.92
45285290--45285393	52	2.0	52	98	0	199	34	8	21	35	1.84
45287419--45287498	27	3.0	27	82	8	85	30	18	12	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45288781--45288833	26	2.0	26	85	0	70	16	13	26	43	1.85
45289829--45289853	12	2.1	12	100	0	50	24	36	24	16	1.94
45290014--45290067	9	5.6	9	91	8	72	40	27	9	22	1.84
45290012--45290064	11	5.2	11	90	9	78	43	28	9	18	1.81
45290111--45290208	17	5.4	17	64	13	52	50	13	4	32	1.60
45290072--45290229	37	4.3	38	89	4	227	47	13	5	33	1.65
45294229--45294265	6	6.2	6	96	0	56	40	0	43	16	1.48
45294262--45294293	8	4.0	8	100	0	64	37	0	25	37	1.56
45294445--45294484	16	2.5	16	91	0	62	27	5	35	32	1.79
45298847--45298871	12	2.1	12	100	0	50	24	36	24	16	1.94
45299031--45299100	9	7.8	9	96	0	122	37	30	10	22	1.87
45306341--45306365	3	8.3	3	100	0	50	68	32	0	0	0.90
45307728--45307764	9	4.1	9	92	0	65	29	10	13	45	1.77
45307995--45308030	16	2.3	16	90	4	56	36	19	0	44	1.51
45311426--45311466	22	1.9	21	85	5	55	26	4	0	68	1.10
45313570--45313604	17	2.1	17	88	0	52	37	28	11	22	1.89
45314881--45315125	34	7.2	34	74	8	187	31	11	14	42	1.81
45314889--45315125	68	3.5	68	87	2	300	30	11	14	43	1.80
45315187--45315241	24	2.5	22	80	13	76	29	25	18	27	1.98
45316427--45316903	238	2.0	238	96	0	882	36	18	11	33	1.87
45316884--45316963	42	1.9	42	81	0	97	41	16	27	15	1.88
45320685--45320714	15	2.0	15	93	0	51	36	26	3	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45329206--45329230	13	1.9	13	100	0	50	84	0	16	0	0.63
45338644--45338823	43	4.1	43	78	7	134	27	15	24	33	1.95
45343253--45343283	16	1.9	16	93	0	53	38	19	16	25	1.92
45354205--45354250	21	2.2	21	77	11	51	63	4	2	30	1.26
45358705--45358812	54	2.0	54	96	0	198	29	11	37	22	1.89
45359093--45359124	7	4.6	7	96	0	55	25	0	28	46	1.53
45359100--45359160	14	4.4	14	82	0	68	36	0	18	45	1.49
45359428--45359467	16	2.3	18	87	12	66	60	0	0	40	0.97
45361405--45361453	3	16.3	3	91	0	80	30	2	2	65	1.15
45361816--45361849	13	2.4	14	85	14	52	44	8	8	38	1.67
45362779--45363023	34	7.2	33	73	9	183	42	14	11	31	1.82
45362779--45363015	68	3.5	68	87	1	298	43	13	11	30	1.81
45364277--45364311	17	2.1	17	88	0	52	22	11	28	37	1.89
45366395--45366435	22	1.9	21	85	5	55	68	0	4	26	1.10
45369834--45369869	16	2.3	16	90	4	56	44	0	19	36	1.51
45370100--45370136	9	4.1	9	92	0	65	45	13	10	29	1.77
45376320--45376404	38	2.2	38	95	4	154	48	4	8	38	1.54
45376494--45376526	13	2.4	14	90	5	50	60	6	0	33	1.21
45376571--45376619	16	2.8	17	77	14	55	59	0	2	38	1.09
45376565--45376615	9	5.7	9	77	15	52	64	0	1	33	1.05
45381329--45381403	5	15.0	5	80	5	80	38	20	5	36	1.75
45381626--45381661	14	2.6	14	91	4	56	44	22	0	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45383530--45383610	30	2.7	30	79	12	94	58	2	8	30	1.42
45384747--45384797	25	2.0	25	96	0	93	31	39	17	11	1.86
45385139--45385193	5	11.4	5	86	11	53	61	5	0	32	1.19
45390872--45390896	3	8.3	3	100	0	50	32	0	36	32	1.58
45390897--45390926	15	2.0	15	100	0	60	13	0	20	66	1.24
45390901--45390966	3	22.0	3	84	0	78	24	0	7	68	1.15
45395948--45395976	12	2.4	12	100	0	58	58	0	34	6	1.25
45404383--45404522	51	2.7	52	83	5	178	29	13	25	32	1.94
45404377--45404553	51	3.4	50	75	6	140	31	12	25	30	1.92
45404712--45404784	37	1.9	38	83	2	94	43	2	23	30	1.67
45406988--45407071	42	2.0	42	100	0	168	28	21	11	38	1.89
45414252--45414316	25	2.6	25	90	0	94	15	26	21	36	1.93
45416412--45416442	15	2.1	15	100	0	62	45	12	6	35	1.68
45417002--45417050	20	2.7	18	77	22	57	51	4	2	42	1.32
45419029--45419055	12	2.2	12	100	0	54	85	0	14	0	0.61
45421104--45421148	19	2.3	19	81	11	56	73	0	20	6	1.05
45428299--45428616	171	1.9	171	89	1	503	28	18	14	38	1.89
45428870--45428898	15	1.9	15	100	0	58	20	20	20	37	1.94
45431677--45431792	57	2.0	57	100	0	232	29	25	15	29	1.96
45433292--45433371	39	2.1	39	92	4	135	32	18	16	32	1.93
45433424--45433540	62	1.9	59	87	5	171	50	4	3	41	1.38
45433519--45433625	20	5.8	18	69	18	60	52	3	1	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45433511--45433614	37	3.0	37	68	20	89	51	4	2	40	1.38
45442338--45442381	19	2.4	18	82	14	54	43	0	6	50	1.29
45445484--45445536	22	2.4	23	81	9	65	39	0	3	56	1.17
45448075--45448109	17	2.0	18	88	5	54	31	5	2	60	1.35
45455728--45455912	40	4.6	39	84	6	221	24	21	27	26	1.99
45455728--45455912	79	2.3	81	84	7	236	24	21	27	26	1.99
45455729--45455945	79	2.7	77	81	10	206	25	21	27	25	1.99
45463702--45463885	39	4.7	39	79	11	180	25	20	27	26	1.99
45463703--45463885	79	2.3	79	80	10	205	25	20	27	26	1.99
45471834--45472122	44	6.3	44	71	12	145	33	19	21	25	1.97
45471843--45472170	142	2.3	142	89	0	512	33	19	20	26	1.97
45472075--45472392	44	6.8	44	67	20	153	33	15	20	30	1.94
45472029--45472392	98	3.8	95	89	5	508	33	16	20	29	1.95
45472225--45472392	88	1.9	88	91	2	275	33	16	20	29	1.94
45471887--45472363	240	2.0	239	82	5	588	33	17	20	28	1.95
45473966--45474024	25	2.2	28	82	17	72	23	6	6	62	1.44
45474081--45474115	17	2.0	18	88	5	54	31	5	2	60	1.35
45476304--45476346	22	1.9	22	85	4	59	39	9	20	30	1.84
45478046--45478088	18	2.4	18	81	14	61	46	4	9	39	1.57
45478556--45478709	28	5.5	28	96	0	256	26	13	27	31	1.94
45480424--45480507	43	2.0	43	95	0	150	28	14	28	28	1.95
45484810--45484845	18	1.9	19	88	5	56	41	0	5	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45487286--45487341	22	2.6	22	85	2	69	12	30	28	28	1.93
45490819--45490863	22	2.0	22	83	16	56	15	35	20	28	1.93
45491647--45491677	11	2.8	11	90	0	53	6	22	6	64	1.40
45494412--45494465	25	2.2	25	86	0	72	29	22	18	29	1.97
45496694--45496736	16	2.7	16	78	10	52	13	0	20	65	1.27
45501180--45501218	18	2.1	19	90	4	62	53	5	5	35	1.45
45503805--45504104	45	6.7	44	76	11	170	43	18	18	19	1.89
45503940--45504106	45	3.7	46	83	3	178	43	18	20	17	1.89
45504271--45504387	41	2.9	41	81	0	126	18	17	26	36	1.94
45504319--45504397	41	1.9	41	92	5	133	16	17	30	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213