genome.fa.s14.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  148  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44435090--44435134	20	2.1	22	84	8	58	22	8	4	64	1.40
44435090--44435134	21	2.2	20	84	4	54	22	8	4	64	1.40
44438286--44438323	5	7.6	5	100	0	76	18	0	0	81	0.69
44438475--44438522	23	2.1	23	100	0	96	41	8	29	20	1.81
44444809--44444862	28	2.0	27	85	3	72	25	25	14	33	1.95
44447166--44447282	28	4.2	27	75	4	117	29	18	20	30	1.97
44449062--44449109	20	2.3	20	82	10	53	41	20	27	10	1.85
44459480--44459592	29	3.9	29	68	12	81	29	17	17	35	1.93
44459492--44459833	29	11.7	29	67	15	75	29	14	19	36	1.91
44459858--44459913	28	2.0	28	82	6	69	28	12	26	32	1.93
44461358--44461429	22	3.6	21	68	22	64	13	15	29	41	1.85
44461299--44461450	76	2.0	76	84	2	198	15	17	27	39	1.90
44461299--44461450	38	4.0	38	84	0	178	15	17	27	39	1.90
44464659--44464719	30	2.0	32	87	6	90	45	6	1	45	1.39
44475070--44475105	19	1.9	19	88	5	56	58	0	2	38	1.13
44478499--44478606	9	11.4	9	68	19	60	55	1	0	41	1.17
44478499--44478567	19	3.6	19	73	11	52	57	1	0	40	1.07
44478519--44478567	20	2.5	20	87	9	66	59	0	0	40	0.98
44480914--44481041	44	3.0	41	75	10	114	25	15	25	33	1.95
44492218--44492529	40	7.8	40	94	0	545	22	27	20	29	1.98
44501126--44501326	40	5.1	40	93	1	332	22	27	20	29	1.98
44501126--44501326	79	2.5	80	92	0	332	22	27	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44501379--44501471	40	2.3	40	100	0	186	23	26	20	29	1.99
44510073--44510464	40	9.8	40	93	0	669	22	27	20	29	1.98
44514435--44514504	28	2.5	27	75	11	70	30	21	25	22	1.99
44514700--44514884	32	5.8	32	87	1	255	39	21	18	21	1.93
44515063--44515117	24	2.3	23	81	9	74	45	23	9	21	1.80
44515153--44515495	27	12.7	27	83	1	402	24	20	19	35	1.96
44526498--44526573	27	3.1	23	75	18	73	42	2	6	48	1.43
44527008--44527067	28	2.1	28	96	0	111	33	6	8	51	1.58
44527011--44527058	14	3.3	15	82	11	73	31	8	6	54	1.55
44528292--44528329	5	7.4	5	83	16	51	36	0	2	60	1.11
44528292--44528329	16	2.5	15	84	16	51	36	0	2	60	1.11
44533929--44534190	102	2.6	103	86	1	393	32	28	20	18	1.96
44534064--44534115	27	1.9	27	96	0	95	32	32	21	13	1.92
44535204--44535253	21	2.4	21	89	0	82	20	38	24	18	1.93
44539625--44539696	29	2.6	28	85	10	96	29	12	25	33	1.92
44539732--44539872	29	4.9	29	83	0	156	31	15	18	34	1.92
44539732--44539893	58	2.8	58	80	0	173	30	15	19	34	1.93
44539732--44539893	87	1.9	86	84	3	218	30	15	19	34	1.93
44554034--44554075	21	2.0	20	86	13	59	19	9	50	21	1.75
44554632--44554665	16	2.2	15	89	5	50	55	0	0	44	0.99
44564293--44564338	22	2.0	23	91	4	76	56	2	2	39	1.24
44566963--44566998	18	2.0	18	94	0	63	36	11	19	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44574874--44574908	18	1.9	18	94	0	61	31	0	37	31	1.58
44574877--44574918	21	2.0	21	85	0	57	35	0	33	30	1.58
44575320--44575353	17	2.0	17	88	0	50	20	17	5	55	1.62
44582081--44582511	144	3.0	144	93	1	740	31	14	19	34	1.92
44585687--44585734	25	1.9	25	82	0	60	33	27	14	25	1.94
44585694--44585781	25	3.5	25	84	6	99	32	27	14	25	1.95
44587494--44587546	25	2.1	25	85	0	70	26	22	16	33	1.96
44603734--44603775	21	2.0	21	90	4	66	57	26	0	16	1.40
44605977--44606039	18	3.6	18	71	4	65	42	4	15	36	1.69
44605973--44606043	35	2.0	35	94	0	124	43	5	18	32	1.73
44616203--44616258	7	7.7	7	76	7	58	60	0	0	39	0.97
44616210--44616256	15	3.1	15	78	3	58	63	0	0	36	0.94
44617790--44617856	30	2.3	28	87	10	91	61	1	0	37	1.05
44625884--44626059	46	3.8	46	83	1	210	29	18	19	32	1.96
44625885--44626059	92	1.9	92	85	2	244	29	18	19	32	1.95
44627825--44627880	28	2.0	28	92	0	94	30	23	1	44	1.63
44630351--44630382	16	2.0	16	93	0	55	25	15	0	59	1.36
44630610--44630800	51	3.8	50	80	4	231	31	27	15	25	1.96
44630608--44630792	101	1.8	102	89	3	293	31	27	16	24	1.96
44630601--44630826	101	2.2	102	82	3	278	30	28	15	25	1.96
44638954--44638986	17	1.9	17	88	11	50	18	9	3	69	1.28
44641697--44641786	35	2.6	35	84	10	105	40	17	15	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44641724--44641798	35	2.1	35	83	9	91	45	16	12	26	1.82
44657376--44657415	19	2.1	19	85	0	53	25	15	7	52	1.68
44661478--44661521	18	2.4	18	88	0	61	40	38	2	18	1.63
44661617--44661693	9	8.6	8	83	13	64	25	7	22	44	1.79
44661616--44661693	18	4.3	18	90	3	113	25	7	21	44	1.79
44661617--44661694	27	2.9	27	84	7	97	25	7	21	44	1.79
44661891--44661923	16	2.1	16	100	0	66	33	24	0	42	1.55
44664255--44664350	39	2.5	38	74	17	90	60	3	6	30	1.37
44664274--44664347	20	3.7	20	73	8	62	58	4	8	29	1.46
44664622--44664680	21	2.8	21	75	14	59	5	10	6	77	1.10
44666346--44666404	27	2.2	27	78	3	66	32	1	1	64	1.13
44670836--44670917	41	2.0	41	80	4	94	17	21	23	37	1.93
44685004--44685038	18	1.9	18	88	0	52	28	17	11	42	1.83
44685904--44685937	17	2.0	17	94	0	59	44	35	14	5	1.70
44689962--44690007	24	1.9	24	100	0	92	41	13	8	36	1.75
44691611--44691727	54	2.2	54	81	3	146	29	28	17	25	1.97
44717497--44717537	22	1.9	22	85	14	59	56	21	0	21	1.43
44719872--44719902	11	2.8	11	95	0	53	6	45	9	38	1.63
44739204--44739374	51	3.4	51	90	1	245	29	24	12	32	1.93
44739270--44739347	25	3.1	25	64	29	65	30	23	12	33	1.92
44746785--44747107	51	6.4	50	80	7	339	30	24	14	30	1.94
44746817--44747111	102	2.9	102	92	1	486	30	23	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44746818--44747103	153	1.9	152	86	3	405	30	23	15	30	1.95
44749838--44749922	20	4.2	20	66	0	53	20	27	20	32	1.97
44749827--44749906	40	2.0	40	85	0	106	22	27	20	30	1.98
44772592--44772642	19	2.7	19	84	0	75	17	7	15	58	1.60
44780781--44780808	12	2.3	12	100	0	56	46	14	0	39	1.44
44795946--44795985	11	3.5	12	90	10	66	20	27	0	52	1.46
44795935--44795985	22	2.3	23	90	6	79	21	25	0	52	1.47
44796150--44796190	19	2.0	21	90	9	68	24	4	0	70	1.06
44796160--44796205	10	4.6	10	78	10	58	26	2	0	71	0.97
44797737--44797779	18	2.4	18	88	0	59	23	27	9	39	1.85
44798121--44798311	93	2.1	92	95	1	346	35	3	5	56	1.38
44798259--44798313	25	2.2	24	75	12	58	40	0	5	54	1.23
44801381--44801778	126	3.2	125	88	2	593	28	17	16	37	1.92
44801828--44801940	33	3.5	32	83	5	129	45	13	0	40	1.49
44804198--44804259	13	4.8	13	85	0	79	33	8	14	43	1.75
44809696--44809791	41	2.3	41	81	0	102	38	26	13	21	1.91
44809716--44809870	66	2.3	66	84	4	186	36	28	17	17	1.92
44809768--44809827	25	2.4	25	91	0	93	36	30	18	15	1.91
44809799--44809905	41	2.7	40	81	9	123	34	28	21	15	1.94
44809835--44809932	38	2.5	38	85	5	115	35	28	19	16	1.93
44814269--44814321	26	2.0	26	100	0	106	49	32	0	18	1.48
44814275--44814318	13	3.4	13	74	0	52	54	27	0	18	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44815460--44815694	41	5.9	41	82	2	212	35	27	19	17	1.94
44815557--44815748	38	5.0	38	83	1	186	34	30	21	14	1.92
44815557--44815748	76	2.5	77	82	2	233	34	30	21	14	1.92
44821553--44821825	147	1.9	147	92	1	467	36	20	10	32	1.88
44825376--44825464	38	2.2	40	88	5	128	49	5	3	41	1.43
44826493--44826531	19	1.9	19	85	10	51	41	0	2	56	1.13
44828146--44828185	20	2.1	19	85	4	53	55	5	2	37	1.35
44833436--44833483	24	2.0	24	84	8	62	22	22	4	50	1.67
44834335--44834378	22	2.0	22	86	0	61	52	0	0	47	1.00
44834471--44834527	15	3.5	15	73	17	60	50	0	0	49	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213