genome.fa.s14.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  142  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42528886--42528966	28	2.7	31	79	14	98	48	23	13	14	1.80
42529794--42530143	177	2.0	181	90	2	564	36	27	8	28	1.85
42535054--42535145	43	2.1	43	81	0	112	23	29	26	20	1.99
42538531--42538557	14	1.9	14	100	0	54	37	22	25	14	1.93
42548854--42548880	14	1.9	14	100	0	54	37	22	25	14	1.93
42552114--42552206	47	2.0	47	95	0	168	30	13	23	32	1.94
42552592--42552662	31	2.3	31	95	2	124	38	30	7	23	1.82
42557807--42557882	20	3.8	20	78	13	93	50	0	27	22	1.50
42561655--42561733	30	2.6	30	79	0	95	39	29	15	16	1.89
42562218--42562324	54	2.0	54	85	3	144	23	25	16	34	1.95
42568002--42568070	28	2.5	27	85	2	84	34	7	8	49	1.61
42578149--42578208	27	2.2	27	78	0	66	23	25	11	40	1.88
42582833--42582858	12	2.2	12	100	0	52	42	7	0	50	1.31
42590843--42590869	7	3.9	7	100	0	54	74	0	11	14	1.08
42591457--42591497	20	2.0	20	95	0	73	58	19	4	17	1.56
42604333--42604382	25	2.0	26	84	4	66	40	4	10	46	1.56
42604565--42604614	22	2.3	22	96	0	91	52	8	14	26	1.68
42611213--42611243	16	1.9	16	93	0	53	77	0	16	6	0.97
42616315--42616385	27	2.7	27	82	8	85	26	49	12	11	1.74
42616427--42616487	27	2.3	27	88	0	86	21	39	21	18	1.93
42621920--42621959	11	3.6	11	100	0	80	32	0	30	37	1.58
42632617--42632738	22	5.3	22	63	21	61	26	29	10	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42632589--42632811	47	4.7	47	89	3	315	27	30	8	33	1.86
42634609--42634728	56	2.1	56	96	0	222	23	23	8	45	1.80
42635783--42635834	25	2.1	25	85	7	70	30	32	7	28	1.85
42636010--42636353	40	8.6	40	89	0	465	25	27	22	24	2.00
42638656--42638878	47	4.7	47	89	3	299	27	30	8	33	1.87
42640516--42640635	56	2.1	56	98	0	231	22	23	9	45	1.81
42642411--42642483	33	2.2	33	87	0	110	41	15	39	4	1.66
42649945--42650286	50	6.7	50	85	2	380	21	28	22	26	1.99
42654961--42655007	21	2.2	21	100	0	94	25	29	8	36	1.86
42656839--42657130	50	5.7	50	80	4	271	21	28	22	27	1.99
42656782--42657131	50	6.9	50	77	6	213	22	27	21	28	1.99
42658891--42658951	31	2.0	31	86	0	86	39	6	18	36	1.76
42661256--42661300	19	2.4	19	96	0	81	22	28	17	31	1.97
42661344--42661376	17	1.9	17	93	0	57	57	9	12	21	1.62
42661488--42661517	14	2.1	15	93	6	53	0	40	0	60	0.97
42670612--42670668	30	1.9	30	92	0	96	14	22	31	31	1.93
42670615--42670679	30	2.2	30	82	0	76	16	24	27	30	1.97
42672405--42672501	48	2.0	48	87	0	140	30	4	21	43	1.71
42672453--42672641	91	2.1	91	82	4	229	28	5	20	45	1.74
42675319--42675370	27	1.9	27	96	0	95	30	21	26	21	1.98
42675541--42675597	26	2.2	26	80	0	69	19	21	22	36	1.95
42682556--42682652	48	2.0	48	82	4	115	34	5	16	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42682604--42682792	91	2.1	91	82	7	224	30	5	19	44	1.74
42684087--42684182	36	2.7	36	90	1	140	30	6	19	43	1.76
42686513--42686583	33	2.2	33	92	0	115	43	14	38	4	1.64
42698223--42698303	40	2.0	40	85	0	108	35	12	29	22	1.91
42698839--42698869	15	2.1	15	100	0	62	25	12	6	54	1.62
42700906--42700953	19	2.5	20	83	13	64	52	6	0	41	1.27
42700894--42700953	20	3.0	20	80	9	70	50	6	0	43	1.28
42700932--42700984	26	2.0	26	82	7	63	50	3	0	45	1.19
42700974--42701038	20	3.3	19	72	10	58	66	9	4	20	1.38
42701026--42701052	14	1.9	14	100	0	54	66	22	0	11	1.22
42701040--42701085	10	4.4	11	82	15	53	63	21	0	15	1.31
42701312--42701374	23	2.7	23	80	7	74	49	11	1	38	1.48
42701430--42701482	27	2.0	27	84	0	70	24	28	26	20	1.99
42701523--42701653	4	31.0	4	75	17	90	70	0	29	0	0.93
42701522--42701601	26	2.9	27	81	10	81	68	0	30	1	0.97
42701550--42701686	40	3.4	44	80	18	172	70	0	28	0	0.92
42701591--42701686	34	2.7	34	79	9	95	70	0	28	1	0.94
42701523--42701686	54	2.9	57	74	16	155	69	0	29	1	0.96
42701550--42701718	79	2.2	77	84	10	218	70	0	28	0	0.92
42707473--42707517	18	2.5	18	88	0	72	15	48	6	28	1.70
42708410--42708528	41	2.9	42	81	5	109	21	23	20	35	1.96
42708424--42708528	41	2.6	41	83	3	122	21	22	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42709305--42709330	7	3.7	7	100	0	52	15	0	26	57	1.38
42709591--42709650	27	2.2	28	82	8	72	46	5	6	41	1.52
42709722--42709767	24	2.0	24	83	12	60	41	0	6	52	1.27
42712961--42713731	213	3.6	213	97	0	1447	40	10	7	41	1.68
42713728--42714111	9	44.9	9	73	13	249	46	21	2	28	1.65
42713729--42713833	25	4.2	25	80	2	113	45	20	2	30	1.66
42713828--42713900	37	2.0	37	94	0	128	47	19	2	30	1.63
42713913--42714112	25	7.8	25	84	2	238	45	23	2	29	1.66
42713728--42714111	34	10.7	35	72	16	202	46	21	2	28	1.65
42719581--42719649	21	3.3	21	79	4	68	39	20	37	2	1.68
42719614--42719669	12	4.9	12	72	12	55	41	19	37	1	1.62
42720110--42720257	42	3.5	41	81	9	165	27	22	20	28	1.99
42720273--42720358	42	2.0	44	86	4	122	26	22	19	31	1.98
42720430--42720473	22	2.0	22	86	0	61	47	27	15	9	1.76
42720750--42720788	20	2.0	21	85	10	55	66	10	0	23	1.22
42720907--42720980	27	2.7	27	85	8	98	17	28	29	24	1.97
42721034--42721079	23	2.0	23	95	0	83	58	0	6	34	1.24
42723457--42723526	35	2.0	35	86	5	97	48	2	0	48	1.16
42723467--42723523	23	2.5	22	80	8	60	45	3	0	50	1.18
42724063--42724099	14	2.7	14	91	4	58	10	2	8	78	1.06
42728834--42729013	27	6.7	26	89	5	216	38	21	17	22	1.93
42728835--42729013	54	3.3	53	89	3	250	37	21	17	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42728834--42729013	81	2.2	80	86	3	245	38	21	17	22	1.93
42729256--42729366	32	3.5	32	91	0	186	18	20	22	38	1.93
42731472--42731517	2	23.0	2	100	0	92	50	0	50	0	1.00
42732879--42732929	25	2.0	25	82	17	61	21	35	1	41	1.65
42740336--42740934	27	22.2	27	86	2	758	44	19	19	16	1.87
42748455--42748507	20	2.6	21	76	8	65	7	35	20	35	1.81
42749411--42749468	27	2.1	28	84	6	75	55	13	3	27	1.55
42749412--42749445	18	1.9	18	88	5	52	58	8	2	29	1.43
42770367--42770465	51	2.0	50	82	6	119	50	16	12	21	1.77
42770478--42770565	26	3.4	26	68	3	79	51	13	9	26	1.71
42770391--42770567	51	3.5	51	84	3	214	51	16	10	22	1.74
42780982--42781126	52	2.8	51	78	5	157	12	25	18	43	1.85
42781466--42781503	17	2.2	17	86	9	51	2	5	13	78	1.02
42781465--42781529	12	5.2	12	76	10	58	1	6	12	80	0.97
42784244--42784290	19	2.5	20	86	6	62	44	8	19	27	1.79
42786120--42786159	18	2.3	18	86	4	55	57	15	5	22	1.57
42786223--42786263	21	2.0	21	85	0	55	60	21	4	12	1.50
42786379--42786411	11	3.0	11	83	16	50	78	0	3	18	0.87
42789062--42789193	27	4.9	27	85	4	178	43	20	15	20	1.88
42789062--42789222	54	3.0	54	79	9	152	41	19	17	21	1.90
42798236--42798413	27	6.6	27	83	3	205	28	15	26	29	1.96
42798233--42798413	82	2.2	81	83	2	229	28	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42798318--42798424	27	3.9	27	85	3	72	28	14	26	30	1.95
42803870--42803926	26	2.2	26	78	6	62	21	17	24	36	1.94
42804225--42804303	40	2.0	40	89	0	122	43	3	17	35	1.68
42817447--42817476	14	2.1	14	93	0	51	83	0	16	0	0.65
42827224--42827258	15	2.4	15	90	4	54	48	0	8	42	1.33
42830934--42830960	14	1.9	14	100	0	54	22	14	25	37	1.93
42837091--42837126	18	2.0	18	88	0	54	19	8	19	52	1.70
42837392--42837435	20	2.3	18	84	7	52	36	0	4	59	1.18
42837849--42837902	20	2.5	21	85	8	65	57	3	1	37	1.27
42837884--42837938	11	5.4	11	70	29	50	56	0	1	41	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213