genome.fa.s14.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  158  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47371824--47371879	29	2.0	28	85	3	76	30	7	10	51	1.63
47372592--47372640	26	1.9	25	95	4	89	36	6	38	18	1.76
47373248--47373302	19	2.7	21	80	8	69	34	3	0	61	1.13
47373248--47373324	37	2.0	39	82	7	95	37	2	0	59	1.11
47373266--47373323	29	2.0	30	82	3	73	37	0	0	62	0.96
47373521--47373561	6	6.8	6	100	0	82	48	34	0	17	1.47
47375081--47375120	3	13.3	3	94	0	71	35	2	0	62	1.09
47390461--47390757	50	5.8	50	83	2	290	22	28	20	28	1.99
47390461--47390757	100	2.9	102	81	4	325	22	28	20	28	1.99
47391708--47391762	27	2.0	27	96	0	101	38	21	12	27	1.90
47403477--47403541	20	3.3	19	73	16	51	38	16	21	23	1.93
47412347--47412376	12	2.4	13	94	5	53	20	6	6	66	1.38
47418579--47418618	20	2.0	20	90	0	62	50	12	10	27	1.72
47418567--47418633	34	1.9	35	87	3	100	46	11	8	32	1.72
47418602--47418641	14	2.9	14	84	0	53	42	17	7	32	1.77
47419741--47419770	16	1.9	15	93	6	51	53	6	6	33	1.53
47440443--47440627	40	4.7	40	81	7	200	24	23	27	24	2.00
47440443--47440627	79	2.3	81	82	7	218	24	23	27	24	2.00
47440496--47440660	79	2.1	79	83	6	201	26	21	27	24	1.99
47442262--47442286	6	4.2	6	100	0	50	64	36	0	0	0.94
47448343--47448437	20	4.8	20	70	8	68	10	28	21	40	1.86
47448331--47448437	40	2.7	38	71	9	97	11	28	20	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47450001--47450052	23	2.3	23	80	3	70	26	5	21	46	1.74
47452857--47452886	15	1.9	16	93	6	53	56	0	0	43	0.99
47460707--47460817	20	5.6	19	72	9	87	36	19	29	13	1.90
47460702--47460817	40	2.9	40	84	2	135	37	21	28	12	1.91
47464272--47464335	25	2.6	25	87	5	85	25	20	23	31	1.98
47467077--47467244	40	4.2	40	89	0	221	25	29	21	23	1.99
47467078--47467297	80	2.8	79	79	4	201	25	28	21	24	1.99
47469995--47470042	17	2.7	19	84	9	57	10	6	2	81	0.95
47472736--47472792	27	2.2	26	83	3	69	15	21	21	42	1.89
47475405--47475452	15	3.1	15	88	11	71	47	0	33	18	1.49
47475508--47475766	131	2.0	131	91	0	419	35	13	20	30	1.92
47477501--47477766	32	8.4	31	81	7	266	35	19	21	23	1.96
47477517--47477764	64	3.9	64	84	2	302	34	19	22	24	1.97
47477503--47477764	96	2.7	97	82	2	307	35	19	21	23	1.96
47477760--47477825	26	2.5	26	82	0	78	34	24	21	19	1.96
47477815--47477872	27	2.1	27	84	12	75	34	18	24	22	1.96
47477951--47478030	24	3.3	24	92	0	124	51	23	2	22	1.60
47478106--47478440	27	12.4	27	83	1	339	25	21	18	34	1.96
47478349--47478523	81	2.2	81	83	2	217	24	17	18	40	1.91
47478391--47478543	81	1.9	81	88	0	234	21	13	22	43	1.87
47478379--47478543	27	6.1	27	81	2	188	22	13	20	43	1.87
47481542--47481780	51	4.7	50	80	5	257	25	15	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47481542--47481788	101	2.5	101	85	2	327	25	15	27	31	1.96
47481542--47481817	101	2.7	102	82	4	326	26	14	26	31	1.95
47487701--47487854	41	3.8	41	90	0	238	21	27	16	35	1.94
47491341--47491900	138	4.1	138	89	2	824	41	8	5	45	1.57
47497567--47497608	21	2.0	21	90	0	66	7	47	4	40	1.52
47500690--47500728	18	2.2	18	100	0	78	58	5	10	25	1.51
47500987--47501019	5	6.6	5	86	13	50	81	0	15	3	0.80
47501175--47501215	3	13.7	3	100	0	82	34	0	31	34	1.58
47501660--47502169	42	12.2	42	84	3	535	37	22	17	22	1.94
47503151--47503195	20	2.2	21	84	11	58	6	13	6	73	1.24
47505871--47505898	14	2.0	14	100	0	56	21	21	14	42	1.88
47520061--47520227	42	4.0	41	79	11	180	25	22	22	29	1.99
47523293--47523367	28	2.7	28	95	0	132	30	25	20	24	1.98
47523595--47523820	32	7.1	32	75	1	184	35	22	22	19	1.96
47523610--47523820	64	3.3	64	87	0	269	35	23	22	18	1.96
47524098--47524189	27	3.4	27	80	8	82	25	21	14	39	1.91
47524100--47524321	81	2.7	81	79	5	227	24	16	16	41	1.89
47524113--47524310	27	7.3	27	79	10	190	23	17	18	40	1.90
47533180--47533218	20	1.9	21	89	5	62	28	2	7	61	1.37
47536125--47536175	25	2.1	24	85	10	68	56	1	0	41	1.10
47537219--47537262	3	13.3	3	82	17	52	29	38	0	31	1.58
47537218--47537259	7	6.1	7	88	5	68	28	40	0	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47540767--47540799	2	16.5	2	100	0	66	51	0	48	0	1.00
47541536--47541574	18	2.2	18	86	9	53	71	0	5	23	1.05
47547301--47547548	130	1.9	129	87	0	361	33	15	21	29	1.94
47547456--47547685	103	2.2	102	76	11	254	36	16	20	26	1.93
47551794--47551875	42	2.0	42	90	4	130	23	26	15	34	1.95
47575788--47575987	97	2.1	97	93	0	346	47	21	23	8	1.78
47576402--47576452	21	2.4	21	86	0	75	35	7	31	25	1.85
47576416--47576454	18	2.2	18	85	0	51	43	5	30	20	1.73
47577158--47577199	21	2.0	21	100	0	84	38	9	14	38	1.78
47577170--47577235	23	3.0	23	80	12	77	37	7	15	39	1.75
47582779--47582817	6	6.5	6	82	11	53	82	0	17	0	0.68
47584137--47584434	44	6.8	44	88	3	431	27	17	24	30	1.97
47584512--47585125	268	2.3	267	91	0	978	26	20	26	25	1.99
47584950--47585258	100	3.1	100	88	0	447	31	21	22	25	1.98
47584942--47585208	50	5.3	50	67	0	183	29	21	24	23	1.99
47585266--47585643	44	8.7	43	71	10	191	29	19	22	29	1.98
47586256--47586313	19	2.8	19	80	16	71	37	6	17	37	1.76
47586269--47586313	23	2.0	23	95	4	83	40	4	17	37	1.70
47586787--47586817	3	10.3	3	100	0	62	35	0	0	64	0.94
47590933--47590975	19	2.5	16	82	14	50	44	0	0	55	0.99
47590940--47590977	17	2.3	16	83	16	51	42	0	0	57	0.98
47602595--47602763	89	1.9	89	80	2	196	30	18	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47602938--47603052	44	2.6	44	82	9	135	35	13	21	28	1.92
47606215--47606266	27	1.9	27	84	0	68	46	5	0	48	1.26
47607224--47607271	3	16.0	3	100	0	96	33	0	0	66	0.92
47607680--47607711	3	10.7	3	93	0	55	3	0	65	31	1.08
47608546--47608600	18	2.9	18	75	22	51	32	1	0	65	1.03
47616144--47616320	51	3.5	51	82	4	216	22	16	29	31	1.96
47616322--47616416	45	2.1	45	92	0	163	26	18	24	30	1.98
47618363--47618430	16	4.2	16	78	9	75	20	11	47	20	1.81
47620294--47620372	17	4.7	17	80	1	79	21	12	46	18	1.82
47620287--47620372	34	2.6	33	81	3	100	23	12	45	18	1.84
47620294--47620393	50	2.0	51	82	9	125	25	13	44	18	1.85
47620857--47620909	23	2.3	23	81	12	65	32	13	24	30	1.93
47621149--47621666	108	4.8	107	78	5	447	38	12	18	30	1.88
47621132--47621666	54	9.9	54	75	7	385	38	12	18	30	1.88
47621784--47621865	29	2.8	28	89	7	119	45	6	32	15	1.71
47622987--47623030	17	2.6	16	79	10	52	68	0	6	25	1.14
47623295--47623328	3	11.0	3	87	6	50	61	0	2	35	1.11
47624872--47625675	44	18.4	44	69	10	357	27	25	18	28	1.98
47624847--47625683	218	3.8	217	91	1	1293	27	25	18	28	1.98
47624847--47625683	435	1.9	435	89	1	1311	27	25	18	28	1.98
47627739--47627772	17	2.1	17	94	5	61	64	5	5	23	1.38
47631176--47631228	23	2.4	22	76	20	56	9	18	1	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47633827--47633851	13	1.9	13	100	0	50	32	0	12	56	1.36
47636345--47636501	29	5.4	29	83	3	181	36	13	26	24	1.92
47636345--47636588	58	4.2	58	77	3	231	37	13	25	22	1.92
47636489--47636603	29	4.0	28	78	5	113	38	15	25	20	1.92
47636483--47636602	59	2.1	58	82	4	143	37	15	25	21	1.93
47640501--47640552	13	3.9	13	80	7	52	17	5	9	67	1.38
47643959--47644011	22	2.3	22	87	6	70	56	0	9	33	1.32
47644427--47644488	3	20.0	3	84	12	81	61	0	4	33	1.17
47645798--47647132	89	15.0	88	84	3	1292	29	23	15	30	1.95
47645798--47647132	134	10.0	133	82	3	1374	29	23	15	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213