genome.fa.s14.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  136  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40309628--40309911	138	2.1	138	93	1	489	40	7	6	46	1.57
40316384--40316427	22	2.0	22	100	0	88	27	22	22	27	1.99
40317885--40317923	13	3.0	13	100	0	78	15	15	30	38	1.88
40323374--40323405	16	2.0	16	100	0	64	56	18	0	25	1.42
40324530--40324678	41	3.6	41	82	4	167	24	22	18	34	1.96
40331791--40331936	43	3.5	42	78	8	145	36	25	16	21	1.94
40331947--40332089	41	3.5	41	84	0	187	25	23	16	35	1.94
40332920--40332950	12	2.6	12	100	0	62	19	0	6	74	1.03
40334309--40334349	19	2.2	19	100	0	82	65	19	0	14	1.26
40350661--40350727	29	2.2	29	84	5	80	16	29	13	40	1.87
40350679--40350734	29	1.9	29	96	0	103	14	26	16	42	1.86
40350723--40350799	30	2.6	30	78	0	91	27	20	11	40	1.87
40350602--40350880	120	2.3	119	85	3	364	21	25	14	38	1.91
40350783--40350854	28	2.4	29	81	9	83	20	26	9	43	1.83
40352957--40353035	37	2.1	37	88	4	115	25	30	18	25	1.98
40353154--40353650	47	10.5	47	79	12	421	29	29	8	32	1.87
40353256--40353475	76	3.0	76	88	7	314	30	28	8	32	1.86
40353303--40353360	29	2.0	29	100	0	116	34	27	3	34	1.74
40353209--40353571	123	3.0	123	83	6	526	30	28	7	32	1.86
40353399--40353448	21	2.3	21	96	3	91	26	30	16	28	1.96
40353352--40353495	68	2.1	69	97	2	281	28	29	11	31	1.91
40364092--40364133	21	2.0	21	85	4	57	40	19	14	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40381734--40381809	38	2.0	38	92	0	125	14	18	13	53	1.72
40386737--40387094	27	13.3	27	81	7	354	41	17	17	22	1.90
40387567--40387636	33	2.2	32	82	5	79	28	21	18	31	1.97
40392952--40392998	21	2.2	22	92	3	78	21	19	38	21	1.94
40412799--40412827	14	2.0	15	93	6	51	48	20	0	31	1.50
40416824--40416867	22	2.0	23	86	4	63	56	11	20	11	1.64
40419408--40419432	13	1.9	13	100	0	50	64	0	20	16	1.30
40431679--40431732	25	2.2	25	82	0	63	40	16	20	22	1.91
40431691--40431738	25	1.9	25	91	0	78	35	20	20	22	1.96
40432687--40432916	50	4.6	50	83	4	275	23	30	21	25	1.99
40432687--40432916	100	2.3	100	87	3	311	23	30	21	25	1.99
40440526--40440707	91	2.0	91	87	0	265	20	18	26	34	1.96
40455828--40455871	19	2.4	18	84	3	52	11	38	0	50	1.39
40470963--40470987	12	2.1	12	100	0	50	24	28	0	48	1.52
40471955--40472016	30	2.1	30	84	6	81	4	14	4	75	1.13
40475375--40475421	20	2.3	20	85	0	67	21	12	36	29	1.91
40475883--40475944	10	5.9	10	74	10	52	33	32	3	30	1.74
40475883--40475945	21	3.0	21	88	2	90	33	33	3	30	1.74
40476650--40476687	10	3.8	10	83	13	51	26	15	28	28	1.96
40476652--40476698	20	2.3	20	88	0	67	23	14	34	27	1.94
40478048--40478093	12	3.5	13	88	8	67	80	4	0	15	0.86
40478135--40478173	16	2.4	16	100	0	78	64	5	10	20	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40480653--40480695	11	3.6	11	82	14	50	79	6	6	6	1.07
40480653--40480695	14	3.5	13	85	14	56	79	6	6	6	1.07
40480778--40480804	13	2.1	13	100	0	54	77	7	0	14	0.97
40481745--40481816	21	3.4	21	74	16	60	75	4	18	2	1.09
40481746--40481817	37	2.0	36	84	13	94	73	4	19	2	1.12
40484065--40484161	30	3.2	30	75	2	106	28	26	15	28	1.96
40488586--40488623	19	2.0	19	100	0	76	36	21	21	21	1.95
40490433--40490457	12	2.1	12	100	0	50	24	28	0	48	1.52
40492921--40492977	12	4.4	13	78	20	57	73	5	5	15	1.19
40492921--40492977	13	4.3	13	76	10	62	73	5	5	15	1.19
40497743--40497825	30	2.8	28	79	15	87	8	15	4	71	1.28
40497807--40497873	13	5.6	12	76	10	57	14	7	4	73	1.22
40497818--40497873	12	4.5	13	71	6	53	16	5	5	73	1.21
40499339--40499376	10	3.8	10	83	13	51	26	15	28	28	1.96
40499341--40499387	20	2.3	20	88	0	67	23	14	34	27	1.94
40505677--40507578	960	2.0	956	95	1	3411	23	16	17	42	1.88
40507621--40507719	6	16.0	6	72	8	74	5	20	2	72	1.13
40508670--40508716	10	5.1	9	82	14	60	17	2	0	80	0.80
40508672--40508716	19	2.4	18	89	10	65	15	2	0	82	0.77
40508672--40508718	9	5.1	9	82	5	58	17	2	0	80	0.80
40509824--40509849	13	2.0	13	100	0	52	46	7	0	46	1.31
40514303--40514331	12	2.3	13	94	5	51	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40516055--40516089	18	1.9	18	88	11	54	22	20	0	57	1.41
40519395--40519438	22	2.0	22	90	0	70	34	2	36	27	1.70
40524394--40524437	22	2.0	22	95	0	79	34	4	36	25	1.76
40525861--40525895	13	2.7	13	100	0	70	77	5	5	11	1.12
40525936--40525987	14	3.8	13	90	7	77	71	0	9	19	1.13
40525938--40525987	13	3.6	14	87	12	68	74	0	8	18	1.06
40525933--40525987	27	2.0	28	92	3	94	67	0	10	21	1.21
40536861--40536912	27	1.9	27	88	0	77	63	1	25	9	1.35
40550360--40550438	37	2.1	37	88	0	113	26	31	17	24	1.97
40550556--40550713	49	3.2	48	95	2	273	30	31	7	31	1.85
40555244--40555306	21	3.0	21	88	2	81	33	31	4	30	1.78
40561724--40561775	22	2.4	20	79	17	59	11	5	3	78	1.05
40571691--40571747	30	1.9	30	82	7	71	42	15	10	31	1.81
40577219--40577257	18	2.2	18	85	0	51	61	2	23	12	1.43
40579786--40579820	18	1.9	18	88	11	54	22	20	0	57	1.41
40580700--40580727	8	3.5	8	100	0	56	0	10	0	89	0.49
40586895--40586946	23	2.3	22	75	21	54	9	23	1	65	1.32
40599231--40599266	17	2.1	17	89	5	54	25	13	0	61	1.33
40599317--40599402	11	7.7	11	71	16	61	12	10	3	73	1.22
40599309--40599389	44	1.9	41	87	7	117	11	14	2	71	1.24
40600893--40600939	20	2.3	20	81	0	58	23	12	34	29	1.92
40601434--40601487	19	2.7	21	77	8	67	72	3	20	3	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40604877--40604917	15	2.7	16	74	11	50	7	26	0	65	1.18
40606010--40606073	27	2.3	28	87	12	89	10	9	3	76	1.12
40606119--40606177	12	4.7	12	88	12	91	15	1	6	76	1.07
40606119--40606177	13	4.5	13	89	6	93	15	1	6	76	1.07
40610066--40610413	40	8.7	40	89	0	527	20	27	20	31	1.98
40617022--40617074	23	2.4	22	76	20	56	9	18	1	69	1.25
40619976--40620014	18	2.2	18	85	0	51	61	2	23	12	1.43
40630212--40630245	14	2.4	14	90	0	50	29	11	29	29	1.92
40632046--40633203	88	13.2	88	84	3	1327	27	24	24	22	2.00
40632048--40633203	263	4.4	265	85	2	1445	27	25	24	22	2.00
40632363--40632948	44	13.4	43	65	9	170	26	26	25	21	2.00
40632046--40633203	351	3.3	349	84	3	1380	27	24	24	22	2.00
40633286--40633501	44	4.9	44	89	2	326	28	17	24	29	1.97
40633286--40633544	132	2.0	131	81	6	308	29	18	23	28	1.98
40634170--40634213	18	2.3	19	80	15	54	70	4	2	22	1.17
40634268--40634307	16	2.5	16	84	11	55	45	37	2	15	1.59
40634639--40634672	17	2.1	17	88	5	52	85	8	2	2	0.80
40635352--40635433	12	6.7	12	74	9	67	25	3	2	68	1.18
40638698--40638741	22	1.9	23	81	9	54	31	13	13	40	1.84
40639369--40639443	33	2.2	34	90	2	116	42	12	6	38	1.68
40640290--40640336	20	2.3	20	88	0	76	27	17	31	23	1.96
40650235--40650292	20	2.9	19	82	7	62	24	29	13	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40657979--40658016	19	2.0	20	94	5	69	18	34	10	36	1.85
40660630--40660671	11	3.7	12	93	6	70	76	7	4	11	1.15
40660630--40660672	12	3.7	12	90	3	61	76	6	4	11	1.13
40662756--40662810	15	3.8	14	80	7	65	74	1	21	1	1.01
40672641--40672670	15	1.9	16	93	6	53	83	0	13	3	0.77
40673688--40673756	33	2.1	34	83	2	86	30	20	14	34	1.92
40675891--40675939	22	2.2	23	82	10	66	42	18	8	30	1.79
40680178--40680235	12	4.8	12	87	6	73	81	3	3	12	0.95
40680176--40680220	11	4.0	11	94	2	72	80	6	2	11	0.99
40680200--40680237	13	2.9	13	100	0	76	76	0	7	15	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213