genome.fa.s14.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  211  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63367500--63367556	16	3.6	16	90	0	78	29	0	35	35	1.58
63367527--63367569	16	2.7	16	85	0	59	37	2	32	27	1.70
63367500--63367569	32	2.2	32	84	0	86	31	1	32	34	1.67
63367548--63367642	44	2.1	44	82	1	109	32	7	26	33	1.84
63367802--63367836	18	2.0	17	88	5	52	54	0	0	45	0.99
63371447--63371472	4	6.5	4	100	0	52	73	0	0	26	0.84
63389467--63389517	24	2.1	24	100	0	102	37	23	11	27	1.90
63397088--63397114	12	2.2	12	100	0	54	33	0	0	66	0.92
63402119--63402228	37	2.9	37	88	9	118	19	14	15	50	1.77
63402141--63402228	37	2.4	37	98	0	167	17	15	15	51	1.77
63406008--63406118	55	2.0	55	100	0	222	30	32	12	24	1.92
63412655--63412705	5	10.4	5	85	12	61	54	0	0	45	0.99
63412659--63412708	19	2.8	19	88	8	70	56	0	0	44	0.99
63412661--63412715	26	2.2	26	80	9	60	58	1	0	40	1.09
63413655--63413689	14	2.5	14	85	0	52	51	0	11	37	1.38
63423033--63423091	32	2.0	30	83	12	77	28	6	5	59	1.45
63423979--63424056	13	5.6	14	72	19	56	73	0	1	25	0.91
63424132--63424201	35	2.1	34	82	12	85	18	31	15	34	1.92
63425808--63425872	31	2.1	31	88	5	96	24	10	18	46	1.81
63431035--63431195	86	1.9	86	88	0	241	38	18	6	36	1.78
63438525--63438584	29	2.1	28	87	3	84	36	13	10	40	1.78
63440145--63440177	15	2.2	15	89	10	50	63	6	6	24	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63443616--63443646	15	2.0	16	93	6	55	87	0	12	0	0.55
63445652--63445703	4	13.2	4	95	4	97	50	25	0	25	1.50
63448763--63448787	12	2.1	12	100	0	50	8	56	20	16	1.65
63450930--63450979	24	2.1	24	81	7	57	42	0	0	58	0.98
63450936--63450977	22	1.9	22	85	0	57	40	0	0	59	0.97
63451135--63451173	19	2.1	19	85	4	53	28	17	5	48	1.68
63458405--63458438	11	3.0	11	91	4	50	38	0	0	61	0.96
63460286--63460352	33	2.0	33	100	0	134	41	8	11	37	1.73
63463590--63463627	19	2.0	19	94	0	67	26	28	5	39	1.78
63463594--63463635	19	2.2	19	86	0	57	30	23	4	40	1.75
63463783--63463822	4	10.0	4	88	0	53	27	5	25	42	1.75
63470487--63470526	14	2.8	16	78	21	52	55	5	0	40	1.22
63471303--63471335	17	1.9	17	93	0	57	36	0	6	57	1.23
63473640--63473680	21	2.0	21	95	0	73	51	2	4	41	1.36
63475061--63475126	27	2.5	26	82	5	78	37	21	7	33	1.82
63475173--63475242	21	3.4	20	73	11	61	22	8	34	34	1.85
63478490--63478521	17	1.9	17	93	6	57	21	6	21	50	1.71
63480878--63480966	31	2.9	32	75	8	78	40	15	4	39	1.68
63501655--63501939	46	6.6	44	72	14	186	31	21	19	26	1.97
63503468--63503555	3	29.3	3	88	4	133	31	3	1	63	1.18
63503685--63503764	36	2.2	36	82	8	101	37	8	1	52	1.41
63503991--63504029	20	2.1	19	90	9	62	33	2	5	58	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63508520--63508550	15	2.0	16	93	6	55	58	6	19	16	1.59
63517034--63517094	20	3.0	20	85	4	77	44	6	4	44	1.51
63517183--63517213	3	10.3	3	100	0	62	67	0	0	32	0.91
63519012--63519055	24	1.9	24	90	9	74	36	0	2	61	1.09
63519241--63519282	16	2.6	16	92	0	66	42	7	2	47	1.43
63519256--63519317	23	2.8	23	80	4	65	46	1	1	50	1.20
63520908--63520974	24	2.9	23	76	12	66	46	0	0	53	1.00
63525200--63525260	20	3.0	20	85	4	77	44	6	4	44	1.51
63526312--63526340	3	9.7	3	100	0	58	31	0	0	68	0.89
63529507--63529573	34	1.9	35	87	3	100	32	8	11	46	1.72
63529522--63529561	20	2.0	20	85	0	53	30	10	10	50	1.69
63531156--63531214	28	2.1	27	84	3	73	18	8	3	69	1.28
63531234--63531295	24	2.4	28	77	17	73	24	4	6	64	1.37
63531319--63531377	18	3.1	18	80	9	73	33	1	1	62	1.15
63531326--63531384	9	6.2	9	77	15	57	33	0	1	64	1.04
63531635--63531718	38	2.2	38	97	2	159	17	23	11	46	1.82
63535199--63535240	22	2.0	21	85	4	57	47	0	4	47	1.23
63541428--63541525	33	3.3	33	62	26	90	41	14	2	41	1.57
63541410--63541528	56	2.1	56	98	0	229	41	12	3	42	1.59
63543459--63543492	4	8.5	4	93	0	50	50	17	0	32	1.47
63543457--63543489	16	2.1	16	94	0	57	51	15	0	33	1.43
63555646--63555700	27	2.0	27	96	0	101	40	12	10	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63560904--63560928	3	8.3	3	100	0	50	32	0	0	68	0.90
63575580--63575631	21	2.5	21	78	9	54	42	3	19	34	1.69
63582687--63582790	31	3.5	30	71	14	90	22	18	15	44	1.87
63582659--63582805	58	2.5	58	80	8	163	23	16	12	47	1.80
63583266--63583332	31	2.2	31	86	0	89	44	11	17	25	1.83
63583276--63583344	31	2.2	31	89	0	102	44	13	18	23	1.84
63585537--63585895	52	7.1	51	82	9	434	35	14	22	28	1.93
63585523--63585884	98	3.6	98	92	2	571	34	15	21	28	1.94
63585529--63585932	150	2.8	144	81	10	486	35	14	22	27	1.93
63585859--63586004	37	4.0	37	93	1	251	36	16	22	24	1.94
63590457--63590500	20	2.4	17	82	17	52	27	0	4	68	1.09
63597398--63597736	101	3.4	101	88	0	480	29	24	15	31	1.95
63614391--63614446	21	2.8	20	74	15	53	41	1	5	51	1.35
63617454--63617492	18	2.2	18	90	0	60	53	10	5	30	1.56
63617560--63617627	19	3.6	19	80	7	68	60	2	0	36	1.12
63617585--63617675	45	2.0	44	81	12	103	52	4	1	41	1.28
63618504--63618613	10	11.3	10	72	21	74	69	0	30	0	0.89
63618488--63618616	24	5.5	24	75	11	108	66	0	33	0	0.92
63618503--63618621	18	6.4	18	73	15	109	68	0	31	0	0.90
63618509--63618622	14	7.4	14	75	17	102	69	0	30	0	0.89
63618488--63618689	38	5.1	38	70	13	140	65	0	33	0	0.96
63618559--63618609	27	1.9	27	84	4	68	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63618504--63618691	45	4.2	45	80	10	176	66	0	32	0	0.96
63619336--63619374	16	2.4	16	82	0	51	56	0	2	41	1.13
63619059--63620055	285	3.4	293	88	6	1436	50	6	12	30	1.65
63619629--63620048	158	2.7	154	73	15	410	50	6	12	30	1.66
63625595--63625656	27	2.3	27	82	0	88	17	30	32	19	1.95
63630298--63630343	22	2.1	22	87	0	65	50	19	6	23	1.71
63633877--63633934	30	1.9	30	83	16	75	29	12	1	56	1.45
63637754--63638166	210	2.0	206	85	5	555	42	17	12	27	1.85
63639230--63639400	56	3.0	55	82	5	207	42	16	18	22	1.88
63643127--63643160	11	3.1	11	91	0	50	17	5	2	73	1.16
63646055--63646124	30	2.3	30	83	13	83	47	14	8	30	1.74
63647028--63647052	12	2.1	12	100	0	50	72	8	0	20	1.10
63650043--63650067	3	8.3	3	100	0	50	68	0	32	0	0.90
63656433--63656460	5	5.6	5	100	0	56	35	0	0	64	0.94
63659319--63659353	6	5.8	6	100	0	70	14	0	0	85	0.59
63659320--63659364	18	2.5	18	88	0	63	11	0	6	82	0.84
63662632--63662690	29	2.0	29	100	0	118	30	35	16	16	1.92
63663762--63663787	4	6.5	4	100	0	52	0	0	23	76	0.78
63664716--63664791	29	2.6	29	97	0	143	50	9	10	30	1.68
63666914--63666980	29	2.2	30	86	5	91	32	10	10	46	1.72
63667265--63667299	17	2.1	17	94	0	61	22	5	14	57	1.59
63670819--63670901	31	2.7	31	77	7	80	39	9	8	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63671457--63671510	23	2.2	26	80	16	69	5	16	5	72	1.23
63671458--63671516	26	2.4	23	86	8	73	5	18	5	71	1.24
63671460--63671512	24	2.3	23	83	3	61	5	18	5	69	1.28
63679494--63679544	26	2.0	25	81	11	59	49	7	5	37	1.56
63683628--63684062	148	2.9	149	83	3	561	35	20	13	31	1.91
63695928--63695969	16	2.8	15	78	7	50	47	21	11	19	1.81
63711057--63711092	17	2.1	17	89	0	54	41	8	2	47	1.48
63711395--63711424	13	2.4	13	94	5	53	0	0	30	70	0.88
63714732--63714961	115	2.0	114	90	2	363	20	8	24	46	1.79
63714846--63715187	155	2.2	155	88	4	503	23	10	20	45	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213