genome.fa.s14.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  153  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45862463--45862516	25	2.2	25	96	0	99	44	16	20	18	1.87
45865905--45865969	20	3.2	20	68	8	60	16	35	15	32	1.91
45865854--45866158	40	7.7	40	81	0	288	21	28	16	33	1.95
45869175--45869207	15	2.1	17	88	11	52	24	12	0	63	1.28
45870263--45870434	95	1.8	95	88	2	265	20	16	16	47	1.83
45873678--45873728	23	2.3	23	86	3	68	31	29	21	17	1.96
45882544--45882572	8	3.6	8	100	0	58	34	27	13	24	1.93
45887147--45887187	20	2.0	20	86	9	57	24	34	29	12	1.91
45892376--45892690	165	1.9	165	90	1	497	25	16	26	31	1.96
45893374--45893421	22	2.2	22	88	0	69	35	0	12	52	1.40
45896250--45896289	20	2.0	20	85	14	55	17	10	2	70	1.27
45896250--45896290	21	2.0	21	85	9	57	17	9	2	70	1.25
45898512--45898568	29	1.9	30	82	10	73	56	5	7	31	1.49
45909496--45909840	42	8.2	42	85	0	341	22	18	22	36	1.95
45909496--45909840	84	4.1	84	83	2	415	22	18	22	36	1.95
45918980--45919082	33	3.1	33	76	15	131	18	14	27	39	1.89
45924614--45924667	3	18.0	3	78	0	54	59	5	0	35	1.21
45924901--45924939	15	2.5	15	88	12	53	76	0	2	20	0.90
45926595--45926673	39	2.0	39	97	0	149	31	18	17	31	1.95
45926697--45926835	45	2.9	49	72	9	142	31	20	12	35	1.90
45926759--45926916	41	3.7	42	75	12	124	31	22	15	30	1.95
45926697--45926916	96	2.4	93	80	8	222	30	21	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45929031--45929456	47	9.1	47	91	0	656	32	9	29	28	1.88
45929575--45929653	37	2.1	37	90	0	122	24	18	31	25	1.98
45931508--45931653	43	3.4	43	98	0	274	22	13	35	28	1.92
45931635--45931708	29	2.6	29	86	4	96	25	14	32	27	1.95
45935393--45935959	47	12.1	47	94	0	920	32	8	29	28	1.87
45936078--45936156	37	2.1	37	90	0	122	24	18	31	25	1.98
45937515--45937740	51	4.7	51	69	13	181	28	19	17	34	1.95
45937514--45937741	95	2.4	96	89	0	350	28	19	17	34	1.95
45937559--45937823	44	5.9	44	74	10	194	29	18	17	34	1.94
45944643--45944707	18	3.5	17	73	19	58	70	0	4	24	1.06
45944791--45944829	15	2.5	15	88	12	53	74	2	2	20	1.06
45954357--45954386	16	1.9	16	93	6	53	50	20	0	30	1.49
45966673--45966707	17	2.1	17	88	0	52	54	0	2	42	1.15
45970887--45970911	6	4.2	6	100	0	50	20	0	0	80	0.72
45971156--45971185	14	2.1	14	93	0	51	53	0	0	46	1.00
45972573--45972611	20	2.0	20	84	0	51	17	7	2	71	1.21
45973441--45973489	23	2.0	25	88	7	75	32	2	0	65	1.04
45976050--45976096	24	2.0	24	95	0	85	23	17	34	25	1.96
45984433--45984540	42	2.6	40	73	15	94	21	33	19	25	1.97
45986731--45986830	49	2.0	49	88	0	146	49	13	7	31	1.68
45988967--45989006	22	1.9	20	85	10	53	17	20	30	32	1.95
45990139--45990369	94	2.4	94	83	2	266	33	17	22	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46005893--46005935	21	2.0	21	90	0	68	46	18	4	30	1.69
46008766--46008798	16	2.1	16	94	0	57	51	0	0	48	1.00
46008823--46008847	13	1.9	13	100	0	50	40	0	0	60	0.97
46009796--46009878	37	2.3	35	80	15	96	43	3	22	30	1.70
46009799--46009871	37	1.9	38	86	8	105	42	4	23	30	1.73
46012710--46012885	29	6.2	29	78	10	132	35	15	19	28	1.93
46012775--46012885	29	3.8	29	90	0	159	38	12	19	28	1.89
46017731--46017785	19	2.8	19	76	15	58	38	5	27	29	1.79
46035641--46035694	18	3.0	17	80	17	56	72	1	1	24	1.05
46035661--46035693	13	2.3	15	90	10	52	72	3	3	21	1.11
46035646--46035693	19	2.6	19	84	12	57	72	2	2	22	1.05
46042885--46042945	23	2.5	24	86	5	79	45	16	9	27	1.79
46047330--46047381	15	3.4	16	79	12	56	46	0	1	51	1.12
46047330--46047359	16	1.9	15	93	6	51	43	0	0	56	0.99
46047240--46047499	122	2.1	120	94	2	448	42	1	5	50	1.36
46047274--46047459	66	3.1	58	67	22	148	42	1	5	50	1.36
46047456--46047497	15	2.7	16	82	14	52	45	0	2	52	1.13
46047447--46047488	15	2.9	15	82	10	52	47	0	0	52	1.00
46047625--46047729	44	2.5	40	76	15	113	31	29	4	34	1.78
46047623--46047732	45	2.6	44	81	8	131	31	29	5	33	1.80
46047711--46047748	16	2.4	16	90	0	58	34	34	0	31	1.58
46049794--46049831	18	2.1	18	90	0	58	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46051456--46051482	13	2.1	13	100	0	54	29	7	22	40	1.81
46058654--46058850	98	2.0	98	93	0	340	37	23	10	29	1.88
46061000--46061510	44	11.8	43	71	14	248	28	22	19	29	1.98
46061023--46061522	218	2.3	217	89	1	768	28	22	20	29	1.98
46072880--46073076	98	2.0	98	94	0	349	37	23	9	29	1.87
46076922--46077005	32	2.7	30	80	12	107	57	0	5	36	1.23
46077054--46077095	18	2.3	18	88	8	59	59	2	9	28	1.41
46081328--46081464	67	2.1	65	79	5	141	35	20	8	35	1.82
46082191--46082239	24	2.0	24	100	0	98	24	30	20	24	1.98
46083327--46083371	22	2.2	20	84	8	54	35	20	4	40	1.72
46084677--46084719	22	2.0	22	85	0	59	37	25	18	18	1.94
46085103--46085173	10	7.3	10	76	4	56	69	0	2	28	1.03
46085103--46085164	19	3.2	19	76	13	54	67	0	3	29	1.06
46086180--46086224	13	3.5	13	80	19	58	71	0	2	26	0.98
46087387--46087433	22	2.1	23	84	4	60	68	2	4	25	1.19
46087410--46087470	28	2.2	28	85	5	79	67	1	3	27	1.16
46087846--46087880	12	2.9	12	91	0	52	25	8	25	40	1.84
46088191--46088223	11	3.1	11	91	8	59	30	6	0	63	1.18
46088468--46088497	4	7.5	4	100	0	60	76	0	0	23	0.78
46105090--46105534	44	10.1	44	87	3	583	30	24	12	32	1.92
46107769--46107807	19	2.1	19	85	0	51	66	5	12	15	1.41
46111943--46111980	12	3.2	12	82	10	51	55	0	10	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46111934--46111980	24	2.0	24	87	8	69	57	0	10	31	1.33
46117269--46117301	14	2.2	16	89	10	52	66	3	0	30	1.06
46120830--46120872	20	2.1	21	83	12	54	37	20	0	41	1.53
46124176--46124228	28	1.9	28	84	3	72	45	7	0	47	1.31
46129160--46129522	188	1.9	188	98	0	708	30	17	14	37	1.90
46131422--46131458	17	2.1	18	90	5	58	29	24	0	45	1.53
46132124--46132212	44	2.0	44	100	0	178	26	22	22	28	1.99
46132228--46132307	9	9.4	8	81	12	81	80	8	0	11	0.92
46132220--46132307	27	3.4	27	83	12	121	80	7	0	11	0.90
46132218--46132307	18	5.3	16	82	15	110	78	8	0	12	0.95
46132319--46132351	16	2.1	16	88	5	50	84	0	12	3	0.72
46133162--46133193	9	3.8	9	84	16	50	75	0	12	12	1.06
46133162--46133193	16	2.0	16	100	0	64	75	0	12	12	1.06
46134403--46136039	88	18.6	88	93	0	2713	27	21	25	26	1.99
46136008--46136070	31	2.0	31	87	0	90	33	22	28	15	1.95
46135920--46136158	119	2.0	119	98	0	460	29	20	25	24	1.99
46136039--46136851	88	9.2	88	93	0	1317	27	23	24	24	2.00
46135854--46136246	207	1.9	207	92	0	660	28	21	24	25	1.99
46158467--46158563	40	2.5	39	86	1	131	18	30	19	30	1.96
46158467--46158580	39	2.9	40	85	1	140	19	28	18	33	1.95
46169375--46169408	16	2.1	16	94	0	59	20	11	32	35	1.89
46173164--46173194	15	2.1	15	93	0	53	29	19	9	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46178007--46178038	16	2.0	16	93	0	55	40	6	9	43	1.62
46178264--46178448	101	1.8	102	88	5	286	23	18	26	31	1.97
46178264--46178448	51	3.7	50	79	6	169	23	18	26	31	1.97
46178370--46178450	26	3.2	26	64	28	64	22	16	28	33	1.95
46183439--46183673	50	4.6	50	80	8	235	28	21	27	22	1.99
46204794--46204923	49	2.6	48	81	13	142	42	4	2	50	1.35
46204878--46205052	94	1.9	94	93	0	305	36	10	5	48	1.61
46218200--46218269	33	2.1	33	97	0	131	28	17	14	40	1.88
46220880--46220923	22	2.0	23	86	13	65	54	4	2	38	1.33
46225674--46225716	21	2.0	21	86	0	59	37	4	0	58	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213