genome.fa.s14.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  160  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47940107--47940272	22	7.8	22	76	14	100	35	20	2	41	1.65
47944595--47944884	44	6.7	45	76	12	232	29	26	16	28	1.97
47944595--47944884	88	3.4	88	80	4	281	29	26	16	28	1.97
47944769--47944847	38	2.1	38	85	0	104	26	22	17	32	1.96
47944595--47944886	126	2.3	128	85	5	376	29	26	16	28	1.97
47944884--47945384	88	5.7	88	87	0	696	24	26	22	26	2.00
47944919--47945326	44	9.3	44	66	4	230	26	27	21	24	1.99
47946629--47946664	16	2.2	16	90	9	56	0	16	0	83	0.65
47950597--47950634	3	12.7	3	100	0	76	68	0	0	31	0.90
47956005--47956059	6	9.5	6	96	4	96	16	0	16	67	1.24
47962732--47962882	59	2.6	56	86	9	196	40	12	13	33	1.83
47962678--47962884	58	3.6	57	79	10	222	39	13	15	32	1.86
47969812--47969843	16	2.1	15	94	5	55	21	6	34	37	1.79
47972784--47972817	16	2.1	16	100	0	68	11	26	23	38	1.89
47974136--47974174	20	1.9	21	84	5	53	61	7	10	20	1.52
47977290--47977467	27	6.6	27	83	3	205	26	15	28	29	1.96
47977291--47977446	82	1.9	81	88	3	233	26	15	28	29	1.96
47977287--47977467	82	2.2	81	83	2	229	27	15	27	29	1.96
47980738--47980776	20	2.0	19	85	5	51	66	10	0	23	1.22
47980858--47981512	154	4.4	151	84	8	802	30	9	7	52	1.60
47981509--47981927	150	2.8	151	88	2	614	54	6	6	32	1.53
47982285--47982400	10	11.5	10	67	23	57	67	0	1	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47982305--47982372	11	6.4	11	71	23	56	60	0	2	36	1.12
47982279--47982340	32	1.9	32	87	6	90	62	0	1	35	1.05
47982315--47982348	17	2.0	17	88	0	50	64	0	0	35	0.94
47982279--47982391	41	2.7	41	94	2	190	63	0	1	34	1.05
47982369--47982400	9	3.4	9	95	4	55	81	0	0	18	0.70
47982328--47982432	49	2.1	51	94	3	187	66	0	2	30	1.06
47988650--47988738	40	2.1	42	82	10	103	32	10	1	56	1.40
47989238--47989268	6	5.3	6	96	3	55	12	0	16	70	1.16
47990683--47990721	15	2.6	15	80	15	53	58	7	7	25	1.52
47992581--47992802	44	5.0	44	71	16	165	27	23	18	30	1.98
47992600--47993451	89	9.8	88	67	15	351	28	23	18	29	1.98
47992640--47993538	217	4.1	217	93	1	1428	29	23	18	28	1.98
47992863--47993192	173	1.9	173	80	9	379	28	23	19	28	1.98
47992637--47993538	44	20.8	44	71	15	406	29	23	18	29	1.98
48005409--48005447	15	2.6	15	80	15	53	58	7	7	25	1.52
48011364--48011409	16	2.9	16	84	9	60	54	0	4	41	1.20
48013078--48013139	24	2.6	24	86	0	79	35	3	29	32	1.73
48014008--48014098	42	2.2	42	93	0	155	20	20	19	38	1.94
48014417--48014478	21	3.0	21	82	0	79	4	50	19	25	1.67
48020000--48020205	9	24.2	9	69	15	109	33	1	19	44	1.62
48019993--48020055	32	2.0	32	90	6	101	30	3	19	47	1.64
48020276--48020327	22	2.4	21	87	3	68	38	1	19	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48020323--48020360	7	5.6	7	82	17	53	28	0	13	57	1.36
48020308--48020380	27	2.7	26	70	6	74	36	1	13	47	1.52
48020372--48020457	21	4.0	22	72	19	67	34	2	13	48	1.56
48020365--48020508	50	3.2	42	69	21	119	35	3	13	47	1.61
48020418--48020463	7	6.6	7	78	16	51	28	0	10	60	1.30
48020276--48020542	95	2.8	95	90	1	401	35	3	14	46	1.63
48020418--48020463	15	3.3	15	79	17	62	28	0	10	60	1.30
48020684--48020832	61	2.5	61	80	5	178	46	8	4	40	1.52
48020811--48020843	17	1.9	17	93	0	57	51	9	3	36	1.49
48022486--48022525	20	2.0	20	100	0	80	40	5	45	10	1.60
48025474--48025731	113	2.3	112	81	6	306	26	21	17	34	1.96
48027357--48027382	7	3.7	7	100	0	52	61	0	0	38	0.96
48038563--48038601	16	2.4	17	83	12	55	38	0	0	61	0.96
48046517--48046570	28	1.9	28	85	14	76	29	20	16	33	1.95
48046541--48046727	106	1.8	101	83	8	250	28	24	14	31	1.95
48047781--48047882	53	1.9	53	91	0	168	33	16	10	39	1.84
48054838--48054882	19	2.3	20	81	14	58	40	2	6	51	1.41
48055858--48055882	12	2.1	12	100	0	50	36	40	16	8	1.77
48055872--48056032	43	3.7	43	89	4	225	23	26	19	29	1.98
48062967--48063347	114	3.3	112	85	5	503	26	26	20	25	1.99
48063244--48063416	73	2.4	72	90	0	265	24	26	23	26	2.00
48063130--48063576	186	2.4	186	88	0	660	26	25	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48063321--48063531	113	1.9	115	92	2	345	27	27	18	26	1.98
48063433--48063688	85	3.3	73	80	13	307	24	25	22	27	2.00
48063589--48063800	113	1.9	113	93	0	370	24	27	23	24	2.00
48071950--48072032	27	2.9	28	72	13	78	50	2	6	40	1.40
48071991--48072030	21	1.9	21	85	10	55	47	0	7	45	1.31
48071991--48072037	21	2.4	20	76	13	53	46	0	6	46	1.28
48072028--48072148	10	12.4	10	68	21	53	59	3	4	33	1.33
48072097--48072154	9	6.2	9	78	6	53	67	1	1	29	1.11
48072819--48072852	16	2.1	16	88	0	50	32	2	0	64	1.08
48074544--48074577	14	2.3	15	90	5	52	41	0	17	41	1.50
48080841--48080893	26	2.0	26	85	0	70	45	11	16	26	1.82
48081142--48081201	23	2.5	23	86	5	75	41	0	3	55	1.16
48081180--48081241	18	3.2	20	75	20	62	38	0	3	58	1.15
48083413--48083556	54	2.7	54	79	6	157	33	15	29	20	1.94
48083415--48083591	27	6.6	27	76	3	133	32	14	29	23	1.94
48092513--48092550	15	2.5	15	91	0	58	76	0	23	0	0.79
48093238--48093294	26	2.1	27	80	3	62	38	7	1	52	1.39
48098874--48098935	19	3.1	20	80	13	65	56	1	3	38	1.25
48098834--48098978	68	2.1	69	81	6	161	54	4	2	39	1.31
48104713--48104744	14	2.3	14	94	0	55	50	15	6	28	1.68
48109430--48109474	23	1.9	24	86	4	65	35	0	4	60	1.17
48122115--48122375	40	6.6	39	83	5	301	41	28	16	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48122126--48122358	120	1.9	120	89	1	360	41	27	16	15	1.88
48128635--48128765	61	2.1	61	80	5	149	36	6	15	41	1.74
48128878--48129013	41	3.3	41	92	0	218	30	17	19	32	1.95
48128878--48129063	82	2.3	82	81	3	196	30	18	20	30	1.97
48132118--48132159	11	4.1	10	85	14	59	52	0	16	30	1.44
48154872--48155095	40	5.6	40	91	1	317	26	27	20	25	1.99
48154875--48155133	80	3.3	80	86	3	274	26	28	20	24	1.99
48154870--48155133	120	2.2	118	81	5	316	27	28	20	24	1.99
48155066--48155142	40	1.9	41	81	7	95	28	28	19	23	1.98
48162817--48163079	40	6.6	40	87	3	316	26	27	20	25	1.99
48179811--48179842	16	1.9	17	93	6	57	37	21	0	40	1.54
48180003--48180119	41	2.8	42	80	8	139	31	28	17	23	1.96
48187275--48187444	43	4.0	43	77	13	181	32	27	17	22	1.96
48187277--48187434	84	1.9	84	85	7	223	31	27	18	22	1.97
48187937--48187970	9	3.8	9	84	0	50	26	14	0	58	1.36
48187933--48187973	18	2.3	18	100	0	82	29	19	0	51	1.47
48192872--48192896	6	4.2	6	100	0	50	36	48	0	16	1.46
48195258--48195380	59	2.0	61	92	3	205	26	25	6	42	1.79
48195258--48195380	30	4.1	30	93	3	203	26	25	6	42	1.79
48199963--48200041	15	5.3	15	68	13	56	25	21	7	45	1.78
48199941--48200063	30	4.1	30	94	2	203	26	25	6	42	1.79
48203346--48203433	21	4.2	21	76	2	88	45	19	17	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48203310--48203393	42	2.0	42	80	0	96	44	17	21	16	1.87
48209101--48209206	41	2.6	41	95	0	185	21	21	25	31	1.98
48210360--48210390	12	2.6	12	100	0	62	32	0	0	67	0.91
48210400--48210445	24	1.9	24	82	8	58	32	6	2	58	1.36
48214601--48214638	18	2.1	18	85	9	51	71	0	15	13	1.16
48214610--48214662	23	2.3	23	80	6	63	66	0	20	13	1.25
48214619--48214660	22	1.9	22	90	9	68	71	0	19	9	1.13
48215922--48217179	397	3.2	392	86	4	1704	28	18	23	28	1.98
48216924--48217137	44	4.9	44	68	6	137	28	18	25	26	1.98
48215922--48217179	132	9.5	132	87	3	1703	28	18	23	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213