genome.fa.s14.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  191  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57473266--57473319	18	2.9	18	81	10	63	61	0	0	38	0.96
57473240--57473366	30	4.4	29	73	17	88	66	0	3	29	1.13
57473606--57473643	19	2.0	19	89	0	58	28	2	7	60	1.38
57473689--57473735	19	2.4	19	85	3	58	31	2	2	63	1.18
57473689--57473736	10	4.9	10	79	5	53	31	2	2	64	1.16
57474640--57474770	49	2.5	50	79	10	138	60	4	4	30	1.37
57475149--57475261	49	2.2	51	82	7	131	61	4	3	30	1.33
57474596--57476120	508	3.0	508	99	0	3034	44	10	7	38	1.66
57475657--57475769	49	2.2	51	82	7	131	61	4	3	30	1.33
57480444--57480473	4	7.5	4	92	0	51	30	0	23	46	1.52
57481319--57481368	20	2.4	22	80	10	59	38	2	4	56	1.30
57498686--57498727	13	3.2	13	86	6	57	78	2	16	2	0.96
57498689--57498723	18	2.0	17	88	5	52	80	2	14	2	0.95
57508817--57508850	17	2.0	17	88	11	52	50	0	0	50	1.00
57522358--57522539	91	2.0	91	84	2	240	29	13	23	33	1.93
57523357--57523415	28	2.2	26	84	6	73	49	3	16	30	1.63
57523741--57523829	30	2.8	33	83	10	105	33	5	12	48	1.64
57523762--57523844	30	2.8	30	90	0	130	32	4	14	48	1.65
57527923--57527981	13	4.5	13	76	0	64	33	5	25	35	1.78
57527918--57527968	26	2.0	26	92	0	84	31	7	27	33	1.85
57528175--57528220	24	1.9	24	86	0	65	52	2	0	45	1.13
57531435--57531523	30	2.8	33	84	10	114	32	6	12	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57531456--57531538	30	2.8	30	90	0	130	30	7	15	46	1.73
57535395--57535531	41	3.3	41	84	3	150	31	19	20	28	1.97
57544169--57544212	22	2.0	22	81	4	52	54	0	13	31	1.39
57547151--57547176	13	2.0	13	100	0	52	46	15	0	38	1.46
57551064--57551186	43	2.9	43	86	2	158	33	24	16	26	1.96
57551306--57551400	31	3.1	31	86	3	129	47	18	7	26	1.75
57553918--57553947	6	4.8	6	95	4	51	70	0	0	30	0.88
57567895--57567930	18	2.0	18	89	10	56	61	2	2	33	1.25
57568857--57568963	27	3.8	28	73	20	80	29	3	1	64	1.21
57591477--57591535	25	2.4	25	85	0	73	32	23	25	18	1.97
57594996--57595062	10	6.4	10	74	16	64	73	5	19	1	1.12
57595030--57595076	20	2.4	19	89	3	67	68	2	29	0	1.02
57597437--57597473	9	4.1	9	92	0	65	45	13	10	29	1.77
57600102--57600236	40	3.4	40	74	10	107	37	22	22	17	1.94
57600102--57600217	40	2.9	39	76	10	110	32	22	25	18	1.97
57600275--57600454	41	4.4	41	89	2	272	12	21	28	37	1.89
57600275--57600513	82	2.9	81	83	7	252	14	22	26	36	1.92
57600275--57600553	123	2.3	123	80	5	287	15	22	25	36	1.93
57600966--57600997	16	1.9	17	93	6	57	37	0	21	40	1.54
57605356--57605402	23	2.0	23	95	0	85	44	21	2	31	1.64
57605353--57605405	16	3.3	16	76	15	56	43	22	1	32	1.64
57605325--57605942	65	9.6	63	77	16	371	44	12	2	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57605471--57605766	56	5.0	59	85	9	342	44	10	2	41	1.53
57605498--57605593	30	3.3	30	66	16	85	39	10	2	47	1.49
57605490--57605593	25	3.9	25	71	20	77	40	11	1	46	1.51
57605566--57605668	22	4.9	22	70	20	76	47	11	1	38	1.51
57605759--57605796	7	5.1	7	87	12	58	44	26	0	28	1.54
57605754--57605814	16	3.8	16	83	16	90	44	24	0	31	1.54
57605720--57606130	9	48.3	9	67	20	95	44	15	1	38	1.56
57605754--57605814	23	2.5	24	89	10	97	44	24	0	31	1.54
57606010--57606060	16	3.1	16	81	10	66	45	23	1	29	1.64
57606098--57606130	16	2.1	16	94	0	57	51	18	0	30	1.46
57611560--57611730	66	2.6	65	84	4	209	40	18	28	12	1.88
57611709--57611752	21	2.1	21	86	0	61	34	20	43	2	1.64
57611721--57611792	21	3.4	21	80	0	81	34	15	44	5	1.70
57612150--57612454	43	7.1	42	75	5	177	24	20	29	24	1.99
57612150--57612454	86	3.5	85	80	7	278	24	20	29	24	1.99
57612385--57612477	43	2.2	42	86	1	123	25	30	22	21	1.99
57612385--57612496	42	2.6	43	82	1	118	23	29	24	23	1.99
57612592--57612634	22	2.0	22	90	0	68	44	27	18	9	1.80
57624265--57624318	19	2.9	17	79	15	54	42	0	3	53	1.18
57626658--57626880	108	2.1	109	90	0	349	35	13	6	43	1.70
57627471--57627507	3	12.3	3	100	0	74	67	0	0	32	0.91
57628019--57628075	26	2.2	26	81	6	71	56	0	7	36	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57628342--57628382	17	2.4	16	84	11	55	58	0	2	39	1.11
57629278--57629606	108	3.1	107	86	3	448	36	17	15	29	1.91
57629738--57629814	4	18.8	4	74	14	59	68	5	5	20	1.29
57629802--57629854	22	2.4	21	81	12	61	67	5	7	18	1.35
57629920--57629958	16	2.4	16	82	0	51	53	5	7	33	1.51
57630189--57630219	15	2.0	16	93	6	55	58	6	3	32	1.40
57630244--57630334	41	2.2	42	76	9	98	53	3	9	32	1.50
57631877--57632309	44	9.8	44	78	8	403	21	23	25	28	1.99
57631892--57632322	89	4.8	89	85	4	437	22	23	25	28	1.99
57631936--57632322	133	2.9	133	83	6	487	22	23	25	28	1.99
57631868--57632309	222	2.0	223	86	2	611	21	23	25	29	1.99
57633514--57633558	22	2.0	23	86	4	65	0	24	0	75	0.80
57635463--57635570	10	11.4	9	71	17	69	66	0	3	28	1.15
57635498--57635571	18	3.8	20	78	10	57	66	1	2	29	1.14
57639496--57639539	21	2.0	20	83	12	52	52	4	6	36	1.49
57640542--57640578	19	1.9	19	89	10	58	21	2	29	45	1.65
57653767--57653800	12	2.8	12	95	4	59	41	8	0	50	1.34
57657475--57657509	18	1.9	18	88	0	52	17	0	14	68	1.21
57662218--57662272	23	2.4	23	87	0	83	50	1	5	41	1.36
57664158--57664445	87	3.4	85	72	13	247	26	21	20	31	1.98
57664119--57664446	166	1.9	166	86	6	464	26	21	20	31	1.98
57676951--57677002	24	2.2	25	79	10	63	53	1	5	38	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57676957--57677012	24	2.4	24	84	3	78	51	1	5	41	1.35
57677167--57677205	3	12.3	3	84	10	51	64	5	2	28	1.28
57679448--57679510	30	2.1	30	93	0	108	22	3	17	57	1.54
57680916--57680953	18	2.1	18	85	9	51	42	13	5	39	1.66
57699752--57699946	98	2.0	98	92	0	327	36	23	9	30	1.87
57700801--57700850	22	2.2	22	89	3	73	62	6	2	30	1.31
57701405--57701536	19	6.8	19	91	3	219	36	15	10	37	1.82
57701398--57701535	59	2.4	59	91	4	221	36	14	10	38	1.80
57702850--57702922	36	2.0	36	97	0	137	21	23	19	35	1.96
57703950--57703980	16	1.9	16	100	0	62	35	25	6	32	1.82
57722464--57722519	18	3.0	19	77	15	55	17	21	5	55	1.62
57722678--57722785	57	1.9	56	90	5	173	48	4	9	37	1.56
57723340--57723408	21	3.5	20	70	18	54	13	13	14	59	1.62
57723677--57723785	19	5.6	20	72	14	77	20	12	4	62	1.47
57723684--57723793	41	2.8	40	82	12	122	18	13	6	61	1.52
57723725--57723785	20	3.2	18	75	11	68	21	13	1	63	1.37
57723725--57723792	18	3.6	18	75	9	64	20	13	4	61	1.48
57724468--57724513	20	2.2	21	85	11	60	21	10	13	54	1.69
57733097--57733148	25	2.1	25	100	0	104	55	11	7	25	1.61
57735719--57735786	16	4.2	16	94	0	118	27	0	36	35	1.58
57735719--57735786	32	2.1	32	100	0	136	27	0	36	35	1.58
57736011--57736052	15	2.9	15	82	10	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57736310--57736362	27	2.1	27	82	10	67	43	0	0	56	0.99
57744178--57744210	5	6.8	5	96	3	59	42	0	0	57	0.98
57744234--57744307	4	18.0	4	74	22	57	74	2	21	1	1.02
57744216--57744297	17	4.9	16	76	11	67	76	2	15	4	1.06
57744238--57744307	29	2.4	29	86	13	92	74	2	21	1	1.03
57744232--57744295	33	2.0	33	87	9	96	76	3	18	1	1.00
57745162--57745301	40	3.6	39	72	8	115	27	17	23	31	1.97
57745629--57745662	17	1.9	18	88	5	52	29	5	14	50	1.67
57763979--57764024	19	2.3	22	82	17	64	58	0	41	0	0.98
57764077--57764128	3	18.0	3	84	15	58	73	0	26	0	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213