genome.fa.s14.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  50  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13509383--13509447	34	1.9	34	87	6	96	23	0	30	46	1.53
13509416--13509588	89	1.9	89	88	0	256	23	1	29	45	1.60
13509988--13510021	16	2.1	16	88	5	50	70	2	2	23	1.15
13510274--13510332	27	2.2	27	81	0	64	67	10	3	18	1.33
13510537--13510619	41	2.0	41	90	0	130	30	16	16	36	1.92
13515078--13515198	43	2.9	42	93	3	199	17	17	33	31	1.93
13516599--13516630	16	2.0	16	100	0	64	43	18	6	31	1.75
13520207--13520247	21	2.0	21	90	0	64	43	17	7	31	1.76
13526278--13526308	12	2.6	12	94	0	53	22	0	6	70	1.09
13527120--13527312	98	2.0	98	93	2	334	26	9	25	38	1.86
13527670--13528013	23	14.8	22	69	15	162	43	18	11	26	1.84
13527672--13528011	46	7.3	45	74	14	296	43	17	12	26	1.84
13527662--13528043	93	4.1	93	93	1	629	43	17	12	27	1.84
13527662--13528043	187	2.0	186	93	1	647	43	17	12	27	1.84
13528782--13528908	28	4.5	28	89	0	182	30	26	11	30	1.92
13541459--13542044	44	13.5	43	70	16	277	28	20	23	27	1.99
13541459--13542007	84	6.3	88	70	15	272	28	20	23	27	1.99
13541445--13542043	218	2.8	216	88	2	871	28	21	23	27	1.99
13541986--13542071	45	1.9	45	81	9	104	31	18	24	25	1.98
13543219--13543249	12	2.6	12	94	0	53	22	0	6	70	1.09
13544057--13544252	98	2.0	98	93	3	333	28	9	24	37	1.86
13544650--13544914	140	1.9	137	80	10	306	23	13	11	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13545020--13545065	22	2.1	22	83	0	56	71	2	4	21	1.14
13548675--13548712	20	2.0	20	89	5	60	44	31	18	5	1.72
13549707--13549757	24	2.1	24	100	0	102	37	27	3	31	1.75
13564536--13564571	16	2.3	15	86	9	54	44	0	0	55	0.99
13567548--13567586	5	7.8	5	91	0	51	43	0	23	33	1.54
13573126--13573156	8	3.9	8	91	0	53	58	0	0	41	0.98
13573123--13573157	16	2.2	16	100	0	70	54	0	0	45	0.99
13573123--13573166	16	3.0	15	87	9	56	56	2	0	40	1.11
13580193--13580573	192	2.0	192	95	1	683	39	16	15	28	1.89
13581218--13581332	59	1.9	59	94	0	203	40	19	13	27	1.88
13592903--13593564	220	3.0	220	99	0	1315	25	21	13	40	1.89
13595112--13595367	84	2.9	89	80	9	297	33	17	26	22	1.96
13595191--13595528	84	4.1	83	81	8	381	36	16	24	22	1.95
13595298--13595528	75	2.9	76	80	9	261	36	17	22	23	1.94
13595214--13595528	159	2.0	158	85	4	420	36	16	23	23	1.94
13596141--13596189	24	2.1	22	85	7	62	28	2	4	65	1.22
13596158--13596198	20	2.0	21	86	13	59	29	0	4	65	1.13
13596456--13596608	78	2.0	78	97	0	288	41	12	16	28	1.85
13596889--13597223	84	4.1	82	82	6	387	22	25	17	35	1.95
13596889--13597200	159	2.0	159	87	3	459	22	25	16	35	1.95
13600992--13601028	3	12.3	3	100	0	74	67	0	0	32	0.91
13609759--13609786	14	2.0	14	100	0	56	57	0	7	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13625762--13626842	76	14.2	76	85	3	1341	27	18	19	34	1.95
13625762--13626799	151	6.8	152	86	2	1359	28	18	20	33	1.96
13627141--13627250	30	3.7	29	82	4	139	34	18	3	43	1.67
13627689--13627763	22	3.2	23	80	14	82	76	0	24	0	0.80
13627689--13627763	25	3.2	24	81	10	84	76	0	24	0	0.80
13628105--13628140	15	2.3	15	90	4	54	83	0	16	0	0.65
13628274--13628314	15	2.7	15	80	0	55	24	2	0	73	0.96
13631304--13631641	84	4.1	83	78	8	345	35	17	25	21	1.95
13631413--13631641	75	2.9	75	81	7	217	34	17	24	22	1.96
13631330--13631641	159	2.0	159	84	4	407	35	17	24	22	1.95
13632448--13632608	78	2.1	78	97	0	304	41	13	16	28	1.86
13632888--13633046	84	1.9	84	89	0	246	22	28	18	31	1.97
13634952--13634982	3	10.3	3	100	0	62	67	0	0	32	0.91
13637273--13637909	31	21.2	31	71	12	402	33	8	15	42	1.78
13637273--13637909	61	10.6	61	72	12	379	33	8	15	42	1.78
13637280--13637905	92	6.9	92	82	5	704	33	8	15	42	1.78
13637494--13637749	82	3.0	82	77	11	307	33	6	17	42	1.75
13637401--13637749	174	2.0	173	94	1	619	33	7	16	42	1.76
13637575--13637909	91	3.7	92	80	6	360	33	8	15	42	1.77
13637576--13637872	152	1.9	153	81	3	357	32	8	15	43	1.77
13639557--13639608	3	17.3	3	95	0	95	65	0	1	32	1.04
13641599--13641731	30	4.5	30	83	6	164	36	18	0	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13641599--13641731	60	2.2	60	87	1	196	36	18	0	44	1.56
13642203--13642246	19	2.2	20	80	4	54	68	0	31	0	0.90
13645005--13645056	3	17.3	3	100	0	104	67	0	0	32	0.91
13650307--13650386	29	2.8	29	98	0	151	28	10	10	51	1.68
13652478--13652534	25	2.3	25	81	6	71	71	0	21	7	1.08
13656872--13657032	23	7.0	22	75	8	144	42	36	4	16	1.70
13656872--13657028	48	3.4	45	79	13	160	43	35	5	15	1.69
13661097--13661141	18	2.5	18	82	7	56	40	17	4	37	1.70
13665050--13665127	22	3.4	22	77	15	70	39	20	24	15	1.91
13665050--13665153	25	4.4	24	80	13	110	39	21	24	15	1.91
13665050--13665139	47	2.0	44	85	10	119	38	21	24	15	1.92
13666015--13666048	17	2.1	16	88	5	50	0	26	0	73	0.83
13667829--13667883	21	2.6	21	82	0	65	29	29	30	10	1.91
13669638--13669776	46	3.0	45	90	2	197	28	23	10	36	1.89
13671261--13671315	22	2.5	21	85	11	67	27	21	18	32	1.96
13673772--13673831	21	2.8	21	83	14	70	25	23	31	20	1.98
13677291--13677345	28	1.9	29	85	3	76	34	3	1	60	1.25
13677556--13677590	13	2.7	13	100	0	70	60	0	0	40	0.97
13688773--13688842	16	4.4	16	96	0	104	31	0	35	32	1.58
13688821--13688930	45	2.6	45	80	9	133	34	5	28	31	1.80
13689076--13689110	18	2.0	17	88	5	52	54	0	0	45	0.99
13688963--13689279	157	2.0	157	97	0	598	44	3	4	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13689233--13689267	18	2.0	17	88	5	52	54	0	0	45	0.99
13707520--13707568	2	24.5	2	100	0	98	0	51	0	48	1.00
13713685--13713928	117	2.1	119	96	1	447	27	11	9	52	1.66
13713802--13714188	155	2.5	153	90	3	598	30	8	7	52	1.60
13714186--13714992	304	2.6	308	92	3	1339	53	7	9	29	1.61
13714186--13714961	153	5.1	151	89	3	1200	52	7	9	30	1.62
13714186--13714992	305	2.6	301	92	2	1321	53	7	9	29	1.61
13729369--13729407	17	2.2	17	86	4	51	23	7	17	51	1.71
13742084--13742240	82	1.9	81	88	1	233	39	4	3	52	1.37
13742185--13742231	24	2.0	24	87	8	69	36	2	0	61	1.08
13742179--13742238	24	2.3	27	72	21	65	40	1	1	56	1.19
13742190--13742243	24	2.3	24	81	12	67	37	1	0	61	1.07
13742217--13742261	18	2.3	20	85	11	67	44	0	2	53	1.13
13742670--13742801	66	2.0	66	92	0	219	21	18	15	44	1.86
13747886--13747916	15	2.1	15	100	0	62	54	0	0	45	0.99
13747885--13747917	11	3.2	11	87	12	52	57	0	0	42	0.98
13756607--13756673	9	7.4	9	85	6	91	40	20	10	28	1.86
13756607--13756673	27	2.5	27	90	0	107	40	20	10	28	1.86
13759272--13759315	16	2.6	17	85	10	63	36	0	0	63	0.95
13759985--13760020	17	2.1	17	100	0	72	41	0	27	30	1.56
13762816--13763384	126	4.5	125	85	2	728	30	16	23	29	1.96
13762816--13763384	252	2.3	250	87	2	802	30	16	23	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13766511--13766824	21	15.0	21	76	7	273	27	1	26	44	1.62
13766511--13766937	43	9.9	42	72	13	217	27	1	26	44	1.61
13766511--13766796	43	6.9	41	75	14	239	27	1	26	45	1.62
13766623--13766697	15	5.1	16	70	22	58	25	0	28	46	1.53
13766680--13767011	22	14.9	22	68	16	100	25	0	26	46	1.59
13766814--13766854	8	5.4	7	88	11	55	12	0	43	43	1.41
13766814--13766859	16	2.9	15	87	9	65	13	0	41	45	1.43
13766877--13767120	22	11.1	21	68	18	97	24	0	26	49	1.51
13766572--13766935	160	2.2	163	85	6	463	27	1	26	44	1.61
13766972--13767031	29	2.1	29	81	6	68	23	0	28	48	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213