genome.fa.s14.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  204  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61015253--61015308	29	2.0	29	85	3	78	44	3	5	46	1.43
61015253--61015309	28	2.0	28	83	6	71	45	3	5	45	1.43
61016742--61016796	21	2.6	22	88	8	87	23	10	36	29	1.89
61035082--61035119	18	2.1	18	90	0	58	55	5	2	36	1.37
61037903--61037943	20	2.2	20	86	8	59	21	7	4	65	1.37
61040979--61041011	14	2.3	15	89	5	50	72	0	0	27	0.85
61042987--61043020	17	2.0	17	100	0	68	52	23	11	11	1.70
61045026--61045052	11	2.5	11	100	0	54	51	0	7	40	1.30
61045048--61045086	12	3.2	12	85	7	51	74	0	0	25	0.82
61045642--61046045	35	11.3	35	70	12	232	45	11	12	31	1.76
61045642--61046045	18	22.5	18	71	13	244	45	11	12	31	1.76
61045710--61045877	91	1.9	90	83	6	223	47	11	9	32	1.72
61045691--61045937	108	2.3	107	82	10	290	45	11	11	31	1.76
61046221--61046260	16	2.4	17	87	4	55	47	12	15	25	1.80
61046397--61046450	10	5.1	11	74	12	51	61	0	3	35	1.14
61046757--61046795	17	2.3	17	95	0	69	2	12	20	64	1.40
61046946--61047009	9	6.6	9	77	13	56	0	15	1	82	0.74
61046954--61047015	10	6.2	10	78	12	65	0	20	0	79	0.74
61047120--61047164	23	2.0	23	90	0	72	11	13	6	68	1.37
61047372--61047552	58	3.1	57	76	10	179	40	3	19	36	1.70
61047372--61047552	59	3.1	56	76	10	177	40	3	19	36	1.70
61047372--61047552	28	6.2	29	78	10	174	40	3	19	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61047727--61048876	76	14.8	77	82	8	1048	39	20	14	25	1.91
61047726--61048878	152	7.5	151	82	9	1221	39	20	14	25	1.91
61055437--61055473	19	1.9	19	94	0	65	43	5	0	51	1.24
61055461--61055863	35	11.3	34	70	12	197	44	10	12	31	1.77
61055461--61055863	18	22.5	18	71	11	238	44	10	12	31	1.77
61056227--61056264	16	2.4	16	86	8	51	65	0	2	31	1.06
61056751--61056826	10	7.3	10	77	7	71	0	10	6	82	0.82
61056754--61056813	22	2.7	23	82	10	70	0	11	6	81	0.86
61056751--61056837	32	2.8	31	86	6	106	0	14	5	79	0.91
61056791--61056840	24	2.1	24	81	7	57	0	24	2	74	0.93
61056905--61056934	15	2.1	14	93	6	51	0	53	0	46	1.00
61057181--61057374	29	6.6	29	81	5	194	42	4	18	34	1.71
61057181--61057374	59	3.3	58	79	5	219	42	4	18	34	1.71
61057181--61057366	88	2.1	88	85	5	252	44	4	18	32	1.71
61057450--61058033	92	6.3	92	90	0	873	32	6	17	42	1.75
61057497--61058059	31	18.3	31	72	10	159	31	6	17	43	1.76
61065594--61065629	15	2.5	15	90	4	56	58	5	0	36	1.22
61066323--61066383	13	4.7	13	79	0	68	31	9	24	34	1.88
61067618--61068227	18	34.2	18	71	12	402	43	10	13	32	1.78
61067689--61067763	38	2.0	38	86	0	105	37	12	12	38	1.79
61067618--61068227	53	11.4	52	72	13	406	43	10	13	32	1.78
61067794--61068159	70	5.2	68	80	6	313	43	10	13	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61067638--61068227	35	16.6	36	72	13	237	43	10	13	32	1.79
61068329--61068430	18	5.4	18	67	22	57	41	11	13	33	1.81
61068388--61068431	22	2.0	22	86	4	63	34	13	13	38	1.84
61068746--61068800	9	6.1	9	73	14	51	0	18	0	81	0.68
61068751--61068803	20	2.6	21	82	11	65	0	18	0	81	0.70
61068933--61068976	15	2.9	15	83	16	56	2	15	20	61	1.45
61069077--61069135	21	2.7	21	82	15	75	0	27	1	71	0.96
61069234--61069284	17	2.9	18	80	13	63	0	19	3	76	0.94
61069586--61069763	30	6.0	30	74	3	144	39	5	18	36	1.74
61069591--61069757	89	1.9	89	85	0	235	39	5	19	35	1.75
61072607--61072753	10	15.8	9	68	17	68	61	5	3	29	1.35
61076284--61076344	22	3.0	21	73	17	58	50	0	0	49	1.00
61080936--61080982	6	7.5	6	88	9	67	34	14	0	51	1.43
61081470--61081547	31	2.6	29	76	11	77	26	11	8	52	1.67
61083457--61083534	33	2.4	33	84	0	102	46	2	3	47	1.34
61086592--61086619	2	14.0	2	100	0	56	50	0	50	0	1.00
61091063--61091144	34	2.4	34	79	0	92	39	26	6	28	1.80
61092078--61092116	15	2.5	15	87	4	51	51	10	0	38	1.36
61096358--61096400	22	2.0	22	100	0	86	32	13	16	37	1.88
61099800--61099841	22	2.0	22	90	4	68	33	7	14	45	1.72
61106067--61106092	7	3.7	7	100	0	52	88	0	11	0	0.52
61108409--61108437	13	2.1	14	93	6	51	31	0	3	65	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61109651--61109688	17	2.2	17	86	9	51	60	2	2	34	1.24
61116283--61116327	20	2.2	20	88	0	63	22	4	6	66	1.33
61130965--61131023	24	2.4	23	81	15	66	38	0	0	61	0.96
61138286--61138375	22	4.1	22	85	5	101	28	28	0	42	1.56
61138286--61138375	44	2.0	44	83	8	112	28	28	0	42	1.56
61138327--61138425	52	1.9	52	82	12	123	30	33	1	35	1.65
61138379--61138420	22	1.9	22	90	0	66	33	33	0	33	1.58
61138462--61138519	29	2.0	30	89	3	91	37	0	1	60	1.07
61138674--61138718	23	1.9	23	82	13	56	35	37	8	17	1.81
61150310--61150339	15	2.1	14	93	6	51	66	6	0	26	1.16
61152103--61152127	10	2.5	10	100	0	50	8	0	44	48	1.32
61152124--61152158	16	2.2	16	89	0	52	11	0	40	48	1.39
61152535--61153043	46	10.6	46	75	9	333	28	21	18	30	1.97
61152535--61153056	97	5.4	97	80	3	552	28	22	18	30	1.97
61152575--61153043	143	3.3	140	76	9	491	29	21	18	30	1.97
61153338--61153395	24	2.4	24	73	0	62	32	17	10	39	1.83
61168951--61168999	15	3.3	15	82	0	62	59	4	12	24	1.50
61169199--61169254	14	3.9	14	80	17	62	57	1	12	28	1.46
61181120--61181154	3	11.7	3	100	0	70	0	34	0	65	0.93
61182450--61182501	26	2.1	24	82	7	59	53	0	9	36	1.34
61182459--61182511	24	2.2	25	86	10	74	58	0	1	39	1.09
61182969--61183027	18	3.1	19	68	22	52	32	0	5	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61182969--61183053	19	4.4	20	68	23	58	34	1	7	57	1.33
61182979--61183036	19	3.1	18	78	7	62	32	0	6	60	1.23
61184177--61184273	43	2.3	43	83	0	122	44	20	7	27	1.78
61184692--61184735	22	2.0	21	82	13	52	43	2	0	54	1.12
61185212--61185262	20	2.5	20	78	15	59	56	7	1	33	1.39
61185236--61185310	19	3.9	19	68	14	55	50	6	0	42	1.28
61193511--61193548	11	3.6	11	86	10	53	47	0	0	52	1.00
61197505--61197639	56	2.4	56	87	0	189	31	10	13	44	1.77
61216593--61216636	23	1.9	23	86	9	63	36	13	9	40	1.76
61217374--61217418	3	15.0	3	100	0	90	66	33	0	0	0.92
61219636--61219683	19	2.8	16	82	17	60	54	0	0	45	0.99
61236916--61237056	25	5.6	25	72	12	76	26	23	17	33	1.96
61236993--61237059	25	2.7	26	75	13	77	26	19	20	32	1.97
61244273--61244324	24	2.2	24	92	0	86	51	7	3	36	1.49
61250092--61250120	13	2.1	14	93	6	51	82	0	0	17	0.66
61262595--61262638	18	2.4	19	81	11	56	70	6	0	22	1.11
61267169--61267241	26	2.9	26	81	4	87	20	20	20	38	1.94
61269142--61269247	43	2.5	43	87	0	149	30	24	16	29	1.96
61273166--61273204	18	2.2	18	86	13	55	35	0	20	43	1.52
61273431--61273475	23	2.0	23	95	0	81	20	22	26	31	1.98
61276828--61276861	15	2.2	16	94	5	61	26	17	5	50	1.69
61289483--61289523	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61296942--61297000	29	2.0	30	83	6	75	40	0	40	18	1.51
61300994--61301088	42	2.3	42	86	0	136	20	27	36	15	1.93
61308507--61309026	125	4.1	126	86	2	715	36	15	17	30	1.91
61308507--61309026	251	2.1	251	86	2	733	36	15	17	30	1.91
61312046--61312103	21	2.8	21	86	0	80	13	12	36	37	1.82
61312354--61312397	18	2.4	18	88	0	61	43	9	25	22	1.82
61316000--61316084	20	4.2	20	73	5	80	57	17	5	18	1.59
61316000--61316080	21	3.9	21	73	7	67	56	17	6	19	1.61
61316006--61316087	42	2.0	41	87	2	119	56	17	7	19	1.64
61317105--61317161	24	2.4	24	90	0	87	40	7	7	45	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213