genome.fa.s14.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  52  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13990230--13990294	21	3.0	22	86	4	87	29	4	30	35	1.78
13994117--13994155	16	2.4	16	84	12	53	7	10	2	79	1.02
14004682--14004716	18	2.0	17	88	5	52	45	0	0	54	0.99
14004826--14004860	18	2.0	17	88	5	52	45	0	0	54	0.99
14005022--14005116	45	2.1	45	88	1	138	32	27	5	34	1.79
14005095--14005127	16	2.1	16	94	0	57	30	36	0	33	1.58
14005108--14005150	21	2.0	21	95	0	77	34	37	0	27	1.57
14006957--14006996	18	2.2	18	86	4	53	12	27	0	60	1.33
14008057--14008112	14	3.8	14	86	13	69	26	12	1	58	1.44
14008150--14008196	12	3.9	12	85	0	67	19	6	4	70	1.26
14024253--14024293	15	2.7	16	74	11	50	7	26	0	65	1.18
14024451--14024489	15	2.4	15	87	12	51	10	20	2	66	1.33
14027190--14027218	10	2.7	11	94	5	51	6	3	6	82	0.93
14028075--14028148	13	5.5	13	78	10	78	74	2	6	16	1.15
14028085--14028148	29	2.2	29	83	5	76	73	3	7	15	1.19
14028075--14028164	41	2.2	40	82	11	103	73	4	7	14	1.22
14028075--14028164	42	2.2	41	82	6	101	73	4	7	14	1.22
14028127--14028203	31	2.6	29	76	8	82	68	6	14	10	1.37
14029128--14029169	18	2.3	18	87	0	57	71	4	16	7	1.26
14030859--14030896	10	3.8	10	83	13	51	28	31	18	21	1.97
14030858--14030895	20	1.9	20	94	0	67	28	34	18	18	1.95
14030859--14030919	20	3.0	20	83	9	63	29	27	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14030869--14030915	10	4.6	10	80	15	51	31	27	14	25	1.95
14032240--14032286	20	2.3	20	85	0	67	21	12	36	29	1.91
14033890--14034505	321	1.9	321	99	0	1214	29	15	20	33	1.94
14034623--14034660	10	3.8	10	83	13	51	28	31	18	21	1.97
14034622--14034659	20	1.9	20	94	0	67	28	34	18	18	1.95
14036393--14036454	12	4.6	13	74	20	56	72	3	8	16	1.21
14037382--14037416	18	1.9	18	88	11	54	57	0	20	22	1.41
14039059--14039096	10	3.8	10	83	13	51	28	31	18	21	1.97
14039058--14039095	20	1.9	20	94	0	67	28	34	18	18	1.95
14041793--14041837	12	3.6	12	82	11	63	75	4	4	15	1.12
14041793--14041838	13	3.5	13	81	0	65	76	4	4	15	1.11
14041880--14041932	12	4.0	12	73	21	52	75	1	15	7	1.11
14041883--14041953	29	2.5	30	86	9	103	74	2	12	9	1.17
14042759--14042804	20	2.2	20	84	3	56	65	0	26	8	1.21
14042811--14042846	6	6.0	6	93	0	54	33	0	27	38	1.57
14042756--14042822	27	2.5	28	80	4	75	61	0	23	14	1.34
14046395--14046420	13	2.0	13	100	0	52	46	7	0	46	1.31
14046810--14046848	20	1.9	21	89	5	62	35	12	28	23	1.91
14048258--14048304	23	2.1	23	88	7	71	51	10	4	34	1.56
14072798--14072847	25	2.0	25	84	0	64	30	18	26	26	1.98
14072879--14072964	25	3.4	25	67	17	68	32	18	27	20	1.96
14073071--14073118	24	2.0	24	83	4	60	33	18	25	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14075516--14075557	22	2.0	22	90	4	68	19	9	19	52	1.72
14082547--14082579	4	8.2	4	87	12	50	75	0	0	24	0.80
14082572--14082763	73	2.6	73	79	8	187	58	5	9	26	1.51
14085124--14085386	101	2.6	101	85	1	323	30	15	25	28	1.96
14094457--14094525	16	4.2	16	96	3	129	24	0	37	37	1.56
14094457--14094525	33	2.1	32	97	2	129	24	0	37	37	1.56
14094506--14094596	45	2.0	45	85	2	121	27	6	28	37	1.82
14094741--14094795	15	3.4	16	80	16	53	54	1	0	43	1.10
14094747--14094795	16	2.9	18	80	20	61	55	0	0	44	0.99
14094754--14095033	117	2.4	118	92	3	465	50	5	1	42	1.34
14094992--14095032	16	2.5	17	85	14	52	53	0	2	43	1.13
14101423--14101539	59	2.0	60	84	5	157	33	9	20	36	1.85
14121974--14122018	24	2.0	24	87	12	69	64	0	2	33	1.06
14125329--14125376	24	2.0	24	100	0	96	20	25	16	37	1.93
14125334--14125387	24	2.3	24	83	3	65	27	18	16	37	1.93
14127418--14127460	19	2.2	20	87	4	61	27	2	0	69	1.00
14127425--14127465	20	2.0	21	86	9	59	29	0	2	68	1.03
14128008--14128034	4	6.8	4	100	0	54	77	0	0	22	0.76
14130942--14130974	5	6.4	5	93	6	57	0	39	0	60	0.97
14130938--14130974	16	2.3	16	95	0	65	0	40	0	59	0.97
14133075--14133328	126	2.0	126	99	0	499	26	18	24	29	1.98
14142910--14142954	21	2.1	22	84	12	58	6	20	0	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14145445--14145476	16	2.0	16	93	0	55	28	15	12	43	1.83
14150764--14150793	15	2.0	15	93	0	51	63	0	3	33	1.11
14152095--14152133	21	1.9	20	84	5	51	58	2	5	33	1.33
14153892--14153931	19	2.1	19	90	4	62	67	0	32	0	0.91
14153967--14154005	20	2.0	20	85	10	53	64	2	30	2	1.21
14154372--14154420	25	2.0	25	83	0	62	38	0	16	44	1.48
14157312--14157405	49	1.9	49	88	0	143	42	8	25	23	1.82
14158290--14158370	23	3.5	23	89	0	108	25	24	16	33	1.96
14164537--14164698	68	2.4	69	81	5	177	17	20	22	39	1.92
14170305--14170419	43	2.7	43	80	8	117	26	30	20	22	1.98
14174351--14174415	31	2.1	30	83	8	78	32	7	1	58	1.36
14175061--14175123	25	2.5	25	82	10	83	22	12	17	47	1.81
14175259--14175319	30	2.0	30	100	0	122	19	19	16	44	1.87
14177339--14177411	38	1.9	37	86	8	103	31	19	1	47	1.58
14177512--14177833	45	7.2	45	86	0	414	34	25	16	23	1.95
14184777--14184841	32	2.0	32	100	0	130	33	3	29	33	1.73
14185473--14185546	34	2.1	35	82	2	87	21	24	24	29	1.99
14189620--14189671	21	2.5	21	82	14	63	30	1	1	65	1.14
14192042--14192079	6	6.3	6	96	0	67	13	50	18	18	1.78
14200535--14200572	20	1.9	20	88	0	58	28	10	13	47	1.76
14203346--14203409	3	20.7	3	75	15	51	62	1	31	4	1.25
14204877--14204945	27	2.6	27	85	0	93	18	34	28	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14204998--14205140	4	36.2	4	72	21	65	68	0	31	0	0.90
14204997--14205139	38	3.7	38	79	13	150	68	0	31	0	0.90
14204998--14205135	10	13.8	10	67	17	72	68	0	31	0	0.90
14205465--14206023	158	3.5	159	76	11	612	52	7	10	30	1.62
14205975--14206067	43	2.1	44	82	9	109	52	3	12	31	1.55
14207769--14207819	6	8.5	6	91	0	75	29	50	19	0	1.48
14211361--14211466	42	2.6	39	78	10	113	50	13	4	32	1.62
14217764--14217802	18	2.1	18	86	13	53	33	0	2	64	1.08
14218465--14218524	30	2.0	30	96	0	111	56	15	3	25	1.54
14218561--14218587	14	1.9	14	100	0	54	51	14	7	25	1.68
14224793--14224842	25	2.0	25	84	0	64	8	26	14	52	1.68
14224811--14224852	20	2.1	20	86	0	57	4	26	16	52	1.63
14230679--14230711	8	4.1	8	88	11	50	66	0	0	33	0.92
14230681--14230712	9	3.7	9	91	8	57	68	0	0	31	0.90
14235639--14235710	36	2.0	36	97	0	135	43	29	0	27	1.56
14236681--14236719	2	19.5	2	100	0	78	48	0	51	0	1.00
14237252--14237289	3	12.7	3	100	0	76	68	0	0	31	0.90
14237863--14237898	3	12.0	3	100	0	72	33	0	0	66	0.92
14242018--14242121	39	2.7	39	77	5	104	26	6	24	42	1.79
14245881--14246262	69	5.5	69	78	1	343	20	21	24	32	1.97
14245880--14246375	138	3.6	139	78	3	459	20	21	24	33	1.97
14245878--14246379	69	7.3	68	75	3	322	20	21	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14245951--14246328	207	1.8	207	80	1	452	20	21	25	33	1.97
14245937--14246379	207	2.1	207	77	1	449	20	21	24	33	1.97
14254629--14254679	26	2.0	26	100	0	102	35	17	11	35	1.87
14260072--14260146	39	1.9	38	86	10	107	54	1	4	40	1.27
14261330--14261355	6	4.3	6	100	0	52	61	38	0	0	0.96
14263244--14263341	31	3.3	31	70	21	91	51	19	11	18	1.76
14264501--14264567	30	2.2	30	82	10	75	35	26	4	32	1.77
14270330--14270459	61	2.1	62	94	2	228	23	9	15	51	1.72
14271058--14271435	195	1.9	196	88	2	573	39	8	15	35	1.79
14274300--14274360	24	2.5	24	86	7	79	59	1	0	39	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213