genome.fa.s14.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  173  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52061833--52061922	29	3.1	29	98	0	171	43	21	6	28	1.77
52063319--52063436	55	2.1	55	93	1	200	32	19	23	24	1.98
52067021--52067086	20	3.3	20	79	8	80	16	21	19	42	1.89
52072880--52072953	26	2.8	26	79	4	85	31	25	18	24	1.98
52081922--52081951	16	1.9	16	93	6	53	50	20	0	30	1.49
52083081--52083151	25	2.8	25	84	0	106	33	16	22	26	1.96
52088638--52088707	13	5.3	12	74	16	50	42	1	24	31	1.63
52088638--52088696	27	2.2	26	84	3	73	44	0	25	30	1.55
52091547--52091581	18	1.9	18	88	0	52	62	0	2	34	1.10
52097271--52097471	28	7.2	28	90	0	267	33	11	29	25	1.91
52097271--52097471	84	2.4	84	92	0	330	33	11	29	25	1.91
52097279--52097499	28	8.0	27	83	10	127	31	11	29	26	1.92
52102739--52102773	15	2.2	16	90	5	54	37	22	0	40	1.55
52106852--52106889	10	3.6	10	86	13	58	36	0	2	60	1.11
52127799--52128091	50	5.7	50	83	2	316	27	21	28	22	1.99
52130796--52131423	51	12.5	51	82	3	705	30	16	23	29	1.96
52132982--52133014	3	11.0	3	100	0	66	33	0	0	66	0.92
52148217--52148309	25	3.7	25	81	5	107	31	15	31	22	1.94
52150022--52150061	18	2.2	19	90	4	64	40	32	7	20	1.80
52170602--52170669	29	2.3	29	85	5	93	27	30	13	27	1.94
52170491--52170992	174	2.9	174	98	0	959	30	24	14	29	1.95
52170952--52171023	29	2.5	30	82	13	96	30	29	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52191763--52191808	7	6.6	7	97	0	83	23	0	0	76	0.79
52192562--52192659	33	2.9	33	74	8	108	55	3	1	40	1.22
52192608--52192664	25	2.3	26	87	9	91	57	0	0	42	0.98
52192716--52192808	33	2.8	33	75	9	98	54	3	1	40	1.23
52192757--52192813	25	2.3	26	84	9	82	57	1	0	40	1.09
52192567--52193037	149	3.2	148	95	0	827	49	1	1	47	1.18
52192816--52192863	23	2.1	23	88	7	71	37	0	0	62	0.95
52192905--52192957	24	2.2	25	86	10	74	54	1	1	41	1.22
52192904--52193042	25	5.3	25	70	16	77	50	0	1	47	1.15
52192930--52193080	82	1.9	80	87	5	223	47	0	1	50	1.14
52193277--52193308	16	1.9	17	93	6	57	21	21	6	50	1.71
52196170--52196240	3	23.7	3	97	0	124	2	32	0	64	1.08
52197718--52197942	33	6.8	33	69	6	116	26	25	17	30	1.97
52197718--52197978	101	2.6	100	86	2	362	26	25	16	31	1.96
52200962--52201016	26	2.2	25	80	9	58	34	0	5	60	1.20
52202198--52202250	23	2.3	22	84	12	63	62	3	5	28	1.35
52202207--52202259	25	2.2	24	87	12	74	66	5	5	22	1.35
52202782--52202829	24	2.0	24	100	0	96	29	37	4	29	1.76
52206336--52206367	14	2.3	14	94	0	55	31	25	0	43	1.55
52206384--52206431	23	2.0	24	84	12	62	33	16	4	45	1.67
52217936--52217975	16	2.4	17	87	8	55	70	2	0	27	1.01
52219038--52219068	16	1.9	16	93	0	53	74	6	6	12	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52225161--52225406	27	9.2	27	86	2	257	45	19	15	19	1.85
52225161--52225366	53	3.9	54	87	3	247	44	19	15	20	1.86
52225562--52225625	26	2.5	26	79	5	76	15	21	25	37	1.93
52225733--52225848	30	3.9	30	82	0	133	22	25	21	31	1.98
52226434--52226531	25	4.0	24	75	12	99	30	23	22	23	1.99
52233086--52233120	17	2.1	17	88	0	52	40	20	5	34	1.76
52233829--52233853	8	3.1	8	100	0	50	64	0	0	36	0.94
52235607--52235932	46	7.6	45	85	8	368	29	21	13	35	1.91
52235788--52235896	36	3.0	36	90	0	173	30	21	11	37	1.88
52243530--52244678	287	4.0	287	99	0	2266	28	16	23	31	1.96
52248090--52248124	17	2.1	17	88	0	52	34	5	2	57	1.37
52248213--52248325	49	2.3	49	79	11	124	32	3	4	59	1.34
52249588--52249626	20	1.9	20	89	5	60	33	5	5	56	1.43
52249597--52249641	21	2.2	20	84	11	56	35	0	6	57	1.25
52250399--52250443	17	2.5	17	85	7	54	15	6	2	75	1.11
52250408--52250443	17	2.2	16	90	9	56	16	8	0	75	1.04
52255076--52255111	14	2.6	13	87	12	54	86	11	0	2	0.68
52255547--52255589	13	3.4	13	84	15	63	81	0	13	4	0.84
52255542--52255589	12	4.0	12	89	5	71	79	0	14	6	0.92
52255543--52255588	18	2.6	17	81	18	51	80	0	15	4	0.86
52255543--52255589	25	2.0	24	91	8	78	80	0	14	4	0.85
52255947--52256023	38	2.0	38	95	5	138	25	19	10	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52256880--52257160	50	5.6	50	68	3	179	33	21	19	25	1.97
52256869--52257212	100	3.4	99	85	2	447	31	21	21	25	1.98
52257254--52257901	45	14.4	45	83	5	801	29	16	22	31	1.96
52257993--52258088	50	1.9	50	89	0	147	34	23	14	27	1.94
52258109--52258735	44	14.6	43	69	13	264	31	22	19	26	1.98
52258117--52258735	85	7.2	85	69	10	373	31	22	19	26	1.98
52258102--52258735	129	4.9	129	89	1	943	31	22	19	26	1.98
52259428--52259459	10	3.4	10	83	16	50	9	12	0	78	0.97
52259420--52259464	18	2.5	18	92	7	74	11	8	2	77	1.07
52261756--52261792	17	2.1	18	90	5	58	43	5	5	45	1.49
52272334--52272956	229	2.7	229	85	3	806	29	17	20	31	1.96
52273336--52273384	22	2.3	22	82	3	64	28	4	28	38	1.75
52273395--52273433	21	1.9	20	89	5	60	17	2	41	38	1.64
52273545--52273586	22	1.9	22	85	9	59	33	0	35	30	1.58
52279417--52279506	21	4.3	21	67	20	71	48	12	1	37	1.48
52279477--52280009	9	62.0	9	67	19	205	44	20	1	32	1.62
52279489--52279517	12	2.4	12	100	0	58	48	10	0	41	1.37
52279520--52279546	12	2.2	12	100	0	54	51	14	0	33	1.43
52279532--52279979	16	27.8	16	66	21	138	45	20	1	32	1.60
52279598--52279961	25	14.0	25	72	15	158	45	20	0	33	1.57
52279600--52279856	67	3.8	67	93	2	406	46	18	0	34	1.53
52279949--52280009	25	2.4	25	91	0	95	40	22	6	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52281373--52281750	43	8.8	43	88	1	510	25	18	30	24	1.98
52285486--52285557	27	2.7	27	86	0	90	41	26	18	13	1.87
52291687--52291726	19	2.1	19	100	0	80	40	10	10	40	1.72
52292124--52292205	21	3.9	21	72	12	60	17	20	15	46	1.84
52293493--52293569	31	2.5	31	95	4	138	28	6	28	36	1.82
52297495--52297527	7	4.7	7	89	10	50	12	0	0	87	0.53
52297501--52297542	8	5.1	8	86	13	59	14	2	0	83	0.75
52297495--52297538	15	3.0	15	81	15	56	13	2	0	84	0.73
52297495--52297538	14	3.1	14	90	6	70	13	2	0	84	0.73
52297495--52297538	21	2.1	21	87	8	63	13	2	0	84	0.73
52297495--52297559	29	2.2	29	80	0	67	13	6	1	78	1.01
52297741--52297777	11	3.3	11	85	7	56	18	8	8	64	1.45
52299139--52299178	6	6.8	6	88	5	64	27	0	0	72	0.85
52299136--52299178	17	2.5	17	92	3	68	25	0	0	74	0.82
52299136--52299198	6	10.2	6	81	11	56	22	0	3	74	0.96
52301726--52301763	18	2.1	19	85	14	53	15	10	10	63	1.52
52326405--52326444	18	2.2	18	90	0	62	0	20	5	75	0.99
52336166--52336194	13	2.3	13	94	5	51	37	0	3	58	1.15
52337333--52337370	15	2.5	15	95	4	67	42	5	26	26	1.76
52341384--52341428	22	2.0	22	86	0	63	26	15	26	31	1.96
52343227--52343259	15	2.2	15	94	0	57	36	12	0	51	1.39
52346275--52346447	45	3.9	45	89	2	260	24	21	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52348863--52348902	20	2.0	20	85	0	53	60	0	27	12	1.33
52352648--52352690	20	2.2	20	91	0	68	25	4	9	60	1.47
52359230--52359270	21	2.0	20	85	4	55	73	2	0	24	0.96
52364589--52364631	18	2.4	18	92	0	68	41	9	27	20	1.83
52365218--52365242	7	3.6	7	100	0	50	60	12	0	28	1.32
52367341--52367389	10	5.1	10	79	18	59	34	0	0	65	0.93
52367349--52367389	9	4.6	9	84	9	57	36	0	0	63	0.95
52367346--52367394	17	2.8	17	81	3	62	34	0	2	63	1.06
52367846--52367890	21	2.1	21	95	0	81	40	6	13	40	1.71
52378976--52379007	7	4.6	7	100	0	64	25	0	75	0	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213