genome.fa.s14.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  169  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50745667--50745698	3	10.7	3	100	0	64	31	34	0	34	1.58
50748255--50748289	16	2.2	16	90	10	54	48	0	17	34	1.47
50759908--50760031	5	23.4	5	73	17	51	18	4	3	73	1.15
50759926--50759985	31	1.9	32	86	10	88	15	6	0	78	0.95
50759907--50759971	10	6.1	11	70	20	57	18	3	1	76	0.99
50759913--50759989	37	2.1	38	87	7	113	15	6	1	76	1.05
50759926--50759992	16	4.3	15	76	14	64	14	7	0	77	0.97
50761705--50761735	7	4.4	7	100	0	62	12	0	0	87	0.55
50761700--50761741	14	3.1	14	86	6	52	11	2	2	83	0.84
50777873--50777904	16	1.9	17	93	6	57	56	12	0	31	1.37
50781577--50781708	42	3.1	41	77	5	131	26	12	25	35	1.92
50788087--50788129	20	2.2	20	91	0	68	37	18	18	25	1.94
50789968--50790016	19	2.6	18	78	12	53	63	8	2	26	1.34
50792414--50792451	15	2.4	16	82	4	51	60	2	2	34	1.24
50793414--50793460	25	1.9	25	91	4	78	12	12	27	46	1.78
50794953--50794993	15	2.8	15	88	3	57	21	4	0	73	1.02
50798666--50798738	30	2.4	30	81	0	83	17	23	34	24	1.96
50798857--50798897	22	1.9	21	85	5	55	34	2	12	51	1.52
50804843--50805174	109	3.1	109	89	5	514	38	15	16	29	1.89
50805553--50805691	72	1.9	72	91	1	226	41	14	15	28	1.86
50807213--50807250	2	19.0	2	94	0	67	50	2	47	0	1.15
50813408--50813802	50	7.8	50	74	9	275	31	27	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50813413--50813806	101	3.9	101	75	8	354	31	27	15	25	1.96
50813460--50813806	151	2.3	152	96	0	651	31	27	16	24	1.96
50813609--50813802	102	1.9	101	88	1	289	31	27	17	24	1.97
50817545--50817635	18	5.2	18	68	15	57	46	2	1	50	1.20
50818408--50818432	2	12.5	2	100	0	50	52	0	0	48	1.00
50818782--50818848	31	2.3	27	80	14	80	40	13	10	35	1.79
50820945--50820988	22	2.2	20	84	12	54	56	11	0	31	1.35
50822836--50822965	39	3.3	39	90	6	201	64	0	3	32	1.09
50829128--50829173	19	2.4	20	70	23	53	43	0	2	54	1.12
50829810--50829871	30	2.1	30	93	0	106	59	14	3	22	1.49
50832760--50832796	13	2.8	14	84	8	51	24	0	21	54	1.45
50833872--50833992	43	2.8	43	74	12	131	19	19	30	30	1.96
50838162--50838245	23	3.7	23	90	0	123	19	16	25	39	1.92
50846897--50847166	43	6.3	43	80	4	271	26	31	19	22	1.98
50846913--50847146	86	2.7	86	87	0	326	25	30	19	24	1.98
50848488--50848522	16	2.2	16	94	0	61	60	14	11	14	1.60
50850410--50850438	15	1.9	15	100	0	58	27	17	20	34	1.95
50851700--50851763	32	2.0	32	96	0	119	42	25	14	18	1.88
50852101--50852160	10	5.7	11	75	18	56	46	5	0	48	1.24
50852094--50852168	29	2.5	29	81	12	82	48	5	1	45	1.33
50852094--50852166	30	2.4	30	82	8	87	49	4	1	45	1.29
50852101--50852163	20	3.1	20	77	11	74	44	4	0	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50853413--50853676	41	6.6	41	84	4	367	30	24	22	22	1.99
50853413--50853676	118	2.2	121	85	5	365	30	24	22	22	1.99
50853754--50853859	40	2.7	38	77	8	104	20	16	21	40	1.91
50854884--50854925	12	3.4	12	75	18	50	28	4	40	26	1.76
50856031--50856172	27	5.3	27	79	2	144	42	19	18	19	1.89
50856524--50856582	30	1.9	31	93	3	102	18	28	23	28	1.98
50864093--50864225	26	5.2	26	84	4	162	30	20	13	35	1.91
50874128--50874335	91	2.3	91	93	0	344	46	3	4	46	1.39
50874250--50874310	28	2.2	28	85	5	81	45	0	3	50	1.17
50874168--50874310	44	3.2	43	69	20	121	46	2	3	48	1.31
50874362--50874752	66	6.5	58	67	21	220	43	3	4	48	1.41
50874351--50874752	120	3.3	120	95	0	707	43	3	4	48	1.40
50874472--50874506	18	2.0	17	88	5	52	45	0	0	54	0.99
50888436--50888489	23	2.3	23	77	0	63	20	12	25	40	1.88
50891144--50891203	21	2.9	21	82	0	57	25	23	21	30	1.99
50894025--50894069	18	2.5	18	85	7	56	44	20	17	17	1.87
50894602--50894656	21	2.6	22	83	11	62	30	14	20	34	1.92
50894831--50894915	38	2.3	37	81	4	98	32	16	27	23	1.96
50895015--50895059	18	2.6	18	85	3	56	22	15	35	26	1.94
50895163--50895226	23	2.8	22	75	15	67	26	10	23	39	1.88
50913753--50913796	21	2.0	22	83	12	56	36	4	9	50	1.55
50921111--50921142	12	2.6	12	95	5	55	12	15	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50924236--50924386	28	5.5	28	91	1	225	25	13	29	31	1.93
50932398--50932550	28	5.5	28	91	1	229	25	13	29	31	1.94
50932398--50932550	83	1.8	83	88	2	236	25	13	29	31	1.94
50936546--50936597	24	2.2	24	85	0	68	48	9	5	36	1.60
50945447--50945487	3	13.3	3	89	5	64	65	0	31	2	1.05
50951038--50951089	24	2.2	24	85	0	68	50	7	3	38	1.50
50955869--50955899	16	1.9	16	100	0	62	51	0	9	38	1.35
50958116--50958166	26	2.0	26	84	3	68	45	1	3	49	1.32
50958142--50958302	60	2.7	60	79	10	177	52	4	0	42	1.25
50959405--50959515	28	4.1	28	75	11	106	18	12	18	50	1.77
50963108--50963155	18	2.7	18	96	3	89	16	33	39	10	1.83
50984923--50985293	103	3.6	105	88	4	540	30	30	19	19	1.97
50992509--50992553	21	2.1	21	100	0	90	60	4	26	8	1.46
50994454--50994506	24	2.3	23	93	3	88	54	0	1	43	1.11
51002168--51002362	108	1.8	108	91	0	327	33	23	13	28	1.93
51010675--51010718	15	2.8	17	74	19	51	22	22	0	54	1.45
51013360--51013551	44	4.4	44	83	0	233	41	13	10	34	1.79
51015458--51015506	25	2.0	25	84	4	64	44	20	22	12	1.84
51015659--51015808	65	2.3	65	91	0	246	35	22	20	22	1.96
51019310--51019469	41	3.9	41	96	0	293	28	24	20	26	1.99
51039699--51039833	41	3.3	41	77	5	139	32	20	22	24	1.98
51039560--51040097	278	1.9	278	93	0	934	32	20	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51039998--51040171	41	4.3	41	82	3	192	36	21	21	20	1.96
51040215--51040266	22	2.3	23	74	12	54	30	17	7	44	1.77
51040231--51040332	44	2.3	44	86	0	141	18	30	7	43	1.79
51040309--51040350	18	2.3	18	87	0	57	11	38	0	50	1.40
51042803--51042845	13	3.1	14	83	16	54	27	2	4	65	1.25
51042771--51042845	26	2.9	26	69	23	68	30	2	4	62	1.27
51042891--51042924	13	2.5	14	90	9	61	29	0	0	70	0.87
51043292--51043321	13	2.2	13	94	5	51	43	0	0	56	0.99
51043292--51043321	7	4.4	7	91	8	53	43	0	0	56	0.99
51043441--51043516	19	3.9	19	71	28	54	51	2	2	43	1.29
51046400--51048032	818	2.0	818	94	0	2858	32	14	16	35	1.90
51050223--51050360	66	2.1	65	83	5	170	43	18	23	13	1.86
51053928--51053981	2	27.0	2	100	0	108	0	50	0	50	1.00
51057621--51057667	6	7.8	6	86	9	69	53	0	29	17	1.44
51057623--51057668	24	1.9	24	95	0	83	52	0	30	17	1.45
51063380--51063407	14	2.0	14	100	0	56	42	21	21	14	1.88
51064882--51064932	23	2.2	23	89	6	77	41	17	9	31	1.82
51065412--51065440	11	2.7	11	94	5	51	24	0	0	75	0.80
51069179--51069227	20	2.5	20	75	15	57	12	22	6	59	1.55
51069432--51069559	49	2.6	49	78	10	127	23	26	20	29	1.99
51069430--51069609	50	3.6	49	78	9	154	22	27	21	28	1.99
51075277--51075392	15	7.5	15	65	24	62	7	17	12	62	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51075277--51075412	33	4.3	33	80	12	185	8	18	13	60	1.57
51075292--51075346	18	3.2	18	71	23	64	9	16	14	60	1.59
51076484--51076539	21	2.6	22	91	2	87	21	12	25	41	1.88
51079696--51079730	18	2.0	17	88	5	52	45	0	0	54	0.99
51079605--51080227	120	5.2	120	99	0	1228	43	2	4	48	1.36
51079816--51079850	18	2.0	17	88	5	52	45	0	0	54	0.99
51079936--51079970	18	2.0	17	88	5	52	45	0	0	54	0.99
51080056--51080090	18	2.0	17	88	5	52	45	0	0	54	0.99
51080176--51080210	18	2.0	17	88	5	52	45	0	0	54	0.99
51080446--51080513	16	4.2	16	94	0	118	38	33	0	27	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213